Wall clock time and date at job start Sat Apr 11 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 5 5 C 1.34777 * 119.99525 * 84.99977 * 4 2 1 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 2 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.53002 * 117.49883 * 243.74679 * 8 7 5 10 10 C 1.52999 * 117.50041 * 175.08643 * 8 7 5 11 11 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 12 12 H 1.08999 * 110.88832 * 57.57834 * 11 2 1 13 13 C 1.55153 * 111.00813 * 293.64961 * 11 2 1 14 14 C 1.54325 * 102.94172 * 206.42810 * 13 11 2 15 15 N 1.47021 * 107.27492 * 22.19363 * 14 13 11 16 16 C 1.34770 * 125.65095 * 181.02423 * 15 14 13 17 17 O 1.21275 * 120.00161 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.99671 * 0.03995 * 16 15 14 19 19 S 1.81009 * 109.46932 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99780 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00198 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99815 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00224 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47275 * 90.00164 * 24 22 20 26 26 H 1.48504 * 109.47086 * 210.00053 * 24 22 20 27 27 H 1.48502 * 109.47335 * 330.00194 * 24 22 20 28 28 C 1.47425 * 108.69838 * 1.05996 * 15 14 13 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 0.97000 * 120.00580 * 265.00723 * 4 2 1 33 33 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 34 34 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 35 35 H 1.09002 * 115.54555 * 29.41679 * 8 7 5 36 36 H 1.08994 * 117.49747 * 359.97438 * 9 8 7 37 37 H 1.08999 * 117.49607 * 145.01704 * 9 8 7 38 38 H 1.08997 * 117.49705 * 214.98277 * 10 8 7 39 39 H 1.08999 * 117.49922 * 359.97438 * 10 8 7 40 40 H 1.09000 * 110.71627 * 324.78999 * 13 11 2 41 41 H 1.08993 * 110.71994 * 88.06274 * 13 11 2 42 42 H 1.09000 * 109.88238 * 262.77434 * 14 13 11 43 43 H 1.09003 * 109.88132 * 141.61050 * 14 13 11 44 44 H 1.08995 * 109.47357 * 299.99719 * 18 16 15 45 45 H 1.08998 * 109.47001 * 60.00375 * 18 16 15 46 46 H 0.97002 * 120.00250 * 179.97438 * 23 22 20 47 47 H 1.09007 * 110.36478 * 217.03381 * 28 15 14 48 48 H 1.09002 * 110.46331 * 94.76147 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6908 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8591 1.1584 -2.4116 7 6 2.6554 -0.7275 -3.5859 8 6 2.7122 0.2568 -4.7558 9 6 1.8036 -0.0187 -5.9556 10 6 3.3134 -0.2429 -6.0710 11 6 2.0399 -0.7211 1.2494 12 1 1.6547 -1.7398 1.2946 13 6 1.6775 0.0690 2.5345 14 6 2.7765 -0.3637 3.5278 15 7 3.9164 -0.8463 2.7346 16 6 5.0706 -1.3320 3.2329 17 8 5.9471 -1.7029 2.4812 18 6 5.2719 -1.4144 4.7241 19 16 6.9081 -2.1044 5.0748 20 6 6.8763 -2.0871 6.8364 21 1 6.0052 -1.7179 7.3571 22 6 7.9712 -2.5472 7.5548 23 7 7.9476 -2.5339 8.8708 24 14 9.4781 -3.1852 6.6541 25 1 10.4217 -2.0643 6.4121 26 1 10.1451 -4.2243 7.4792 27 1 9.0657 -3.7743 5.3548 28 6 3.5881 -0.7101 1.3038 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 2.2491 -1.6319 -1.1524 33 1 3.6539 -1.1197 -3.3923 34 1 1.9842 -1.5494 -3.8349 35 1 2.8875 1.2982 -4.4859 36 1 1.1657 -0.9013 -5.9116 37 1 1.3814 0.8415 -6.4752 38 1 3.8839 0.4698 -6.6665 39 1 3.6688 -1.2728 -6.1027 40 1 1.7230 1.1428 2.3527 41 1 0.6921 -0.2199 2.8998 42 1 2.4042 -1.1643 4.1669 43 1 3.0822 0.4875 4.1363 44 1 5.1976 -0.4167 5.1565 45 1 4.5063 -2.0569 5.1591 46 1 8.7127 -2.8557 9.3729 47 1 3.9934 -1.5504 0.7400 48 1 3.9748 0.2306 0.9119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050098021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:50 Heat of formation + Delta-G solvation = -58.972617 kcal Electronic energy + Delta-G solvation = -26644.520375 eV Core-core repulsion = 22825.920648 eV Total energy + Delta-G solvation = -3818.599727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58081 -39.74693 -37.99624 -37.28152 -35.47434 -32.59599 -32.45155 -30.72192 -29.89054 -29.10131 -28.23856 -25.63583 -23.87960 -23.23516 -22.76290 -21.43013 -20.88171 -20.23562 -19.40217 -17.84016 -17.54937 -16.99671 -16.69060 -16.13783 -15.67169 -15.44952 -15.24688 -14.95432 -14.49876 -14.40353 -14.15553 -13.89352 -13.83896 -13.63315 -13.38980 -12.92674 -12.85216 -12.71098 -12.56404 -12.29530 -12.02395 -11.92204 -11.89561 -11.82780 -11.49485 -11.30704 -11.25741 -11.03029 -11.00683 -10.76119 -10.61976 -10.43944 -10.07414 -9.87464 -9.57337 -9.44266 -9.01808 -8.62926 -8.51882 -6.94074 -6.30371 -4.02366 2.33506 2.65488 2.73791 2.90678 3.17137 3.32208 3.42123 3.49161 3.57931 4.04702 4.18229 4.26693 4.31730 4.33992 4.35041 4.51836 4.67215 4.71036 4.82602 4.87549 4.91574 5.00864 5.08673 5.08942 5.12726 5.13506 5.20213 5.24479 5.25380 5.32817 5.42220 5.50083 5.52809 5.56229 5.61933 5.67234 5.71829 5.77393 5.81519 5.89662 5.92629 5.99376 6.14087 6.28680 7.13581 7.53067 7.90193 7.92602 8.39283 8.40157 9.15749 10.78789 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002009 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.159730 B =13936.057826 C =15276.544847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.729 5.729 5 C 0.518 3.482 6 O -0.537 6.537 7 C -0.113 4.113 8 C -0.141 4.141 9 C -0.179 4.179 10 C -0.180 4.180 11 C -0.112 4.112 12 H 0.092 0.908 13 C -0.121 4.121 14 C 0.100 3.900 15 N -0.625 5.625 16 C 0.547 3.453 17 O -0.518 6.518 18 C -0.118 4.118 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.116 3.884 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.393 3.854 -24.051 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.110 0.890 4 N -0.381 5.381 5 C 0.305 3.695 6 O -0.414 6.414 7 C -0.152 4.152 8 C -0.159 4.159 9 C -0.216 4.216 10 C -0.217 4.217 11 C -0.132 4.132 12 H 0.110 0.890 13 C -0.159 4.159 14 C -0.024 4.024 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.393 6.393 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.007 4.007 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.116 4.088 -24.977 30.554 hybrid contribution -0.256 -0.339 0.939 1.030 sum -17.372 3.749 -24.039 29.895 Atomic orbital electron populations 1.22166 0.94741 1.02294 1.02818 1.20898 0.94236 0.97313 0.82614 0.88987 1.46117 1.67989 1.14247 1.09736 1.20586 0.77157 0.87345 0.84417 1.90697 1.49748 1.16059 1.84885 1.21246 1.03262 0.98502 0.92223 1.22053 1.05115 1.00633 0.88132 1.23045 0.93139 1.03274 1.02140 1.23019 0.96114 1.02460 1.00153 1.22699 0.95478 1.00669 0.94326 0.88959 1.22659 0.98748 1.00740 0.93742 1.22047 0.86167 0.99675 0.94470 1.48450 1.16060 1.64866 1.06888 1.19994 0.79951 0.76033 0.90465 1.90703 1.41034 1.47194 1.60335 1.23256 1.04545 1.05483 0.93517 1.84787 1.15426 1.82386 1.09039 1.22302 1.06850 1.49586 0.88146 0.89384 1.24708 0.98120 0.94055 0.94395 1.69933 1.31359 1.45080 1.05251 0.86737 0.83300 0.80059 0.81768 1.19189 1.19920 1.15941 1.22131 0.93386 1.02188 0.83007 0.91961 0.92349 0.91251 0.76449 0.88216 0.88779 0.86377 0.88890 0.88771 0.88619 0.88684 0.90038 0.89466 0.90961 0.90929 0.88574 0.88536 0.91927 0.90506 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.33 37.16 0.35 -0.66 16 2 C 0.15 1.09 2.09 -67.93 -0.14 0.94 16 3 H 0.09 0.83 7.54 -51.93 -0.39 0.44 16 4 N -0.73 -4.86 4.77 -53.80 -0.26 -5.12 16 5 C 0.52 4.47 7.79 -10.98 -0.09 4.39 16 6 O -0.54 -6.72 15.23 5.55 0.08 -6.63 16 7 C -0.11 -0.69 5.98 -27.88 -0.17 -0.86 16 8 C -0.14 -1.04 5.41 -90.62 -0.49 -1.53 16 9 C -0.18 -1.13 10.18 -26.69 -0.27 -1.40 16 10 C -0.18 -1.08 10.25 -26.69 -0.27 -1.35 16 11 C -0.11 -0.79 2.62 -88.47 -0.23 -1.02 16 12 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.12 -0.79 5.59 -24.90 -0.14 -0.93 16 14 C 0.10 0.96 6.49 -3.06 -0.02 0.94 16 15 N -0.63 -8.33 3.33 -170.51 -0.57 -8.90 16 16 C 0.55 9.98 7.87 -10.99 -0.09 9.89 16 17 O -0.52 -11.35 16.12 5.56 0.09 -11.26 16 18 C -0.12 -2.30 5.35 36.01 0.19 -2.11 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 24 Si 0.86 21.75 27.74 -169.99 -4.71 17.04 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 28 C 0.12 1.24 6.08 -2.53 -0.02 1.22 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.36 7.50 -51.93 -0.39 -0.03 16 32 H 0.40 1.85 8.60 -40.82 -0.35 1.49 16 33 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.09 0.41 7.88 -51.93 -0.41 0.00 16 35 H 0.12 1.11 7.31 -51.93 -0.38 0.73 16 36 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16 41 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 45 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.08 0.87 8.04 -51.92 -0.42 0.46 16 48 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -36.04 406.21 -9.87 -45.91 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.24 Total: -1.41 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.17 Total: -4.46 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.05 Total: -39.68 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.17 Total: -17.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.04 -9.87 -45.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.060 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds