Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 C 1.50707 * 109.46982 * 239.99687 * 2 1 3 5 5 O 1.21274 * 120.00267 * 240.00073 * 4 2 1 6 6 N 1.34775 * 119.99915 * 60.00085 * 4 2 1 7 7 C 1.46503 * 120.00333 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47348 * 174.95954 * 7 6 4 9 9 N 1.46498 * 112.85172 * 311.51799 * 8 7 6 10 10 C 1.34771 * 119.99901 * 294.02065 * 9 8 7 11 11 O 1.21280 * 120.00040 * 354.96396 * 10 9 8 12 12 C 1.50703 * 120.00219 * 174.69410 * 10 9 8 13 13 S 1.80998 * 109.47305 * 180.02562 * 12 10 9 14 14 C 1.76203 * 99.99790 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00223 * 359.97438 * 14 13 12 16 16 C 1.38800 * 119.99940 * 179.97438 * 14 13 12 17 17 N 1.31635 * 119.99899 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00283 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47286 * 59.99891 * 18 16 14 20 20 H 1.48497 * 109.47414 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47243 * 300.00254 * 18 16 14 22 22 C 1.53781 * 113.68796 * 82.78649 * 8 7 6 23 23 C 1.53785 * 87.08102 * 139.99242 * 22 8 7 24 24 C 1.53779 * 87.08062 * 334.56543 * 23 22 8 25 25 C 1.52998 * 109.47178 * 119.99939 * 2 1 3 26 26 C 1.52995 * 117.49928 * 248.61997 * 25 2 1 27 27 C 1.53001 * 117.49879 * 179.97438 * 25 2 1 28 28 H 1.09005 * 109.47418 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47004 * 300.00186 * 1 2 3 31 31 H 0.97007 * 120.00133 * 0.02562 * 6 4 2 32 32 H 1.08998 * 109.46437 * 54.96076 * 7 6 4 33 33 H 1.09003 * 109.46764 * 294.96345 * 7 6 4 34 34 H 0.96996 * 120.00407 * 114.01782 * 9 8 7 35 35 H 1.09001 * 109.46626 * 299.99714 * 12 10 9 36 36 H 1.08996 * 109.47087 * 59.99216 * 12 10 9 37 37 H 0.97003 * 119.99992 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61721 * 254.53682 * 22 8 7 39 39 H 1.09000 * 113.61705 * 25.44570 * 22 8 7 40 40 H 1.09003 * 113.61467 * 220.02000 * 23 22 8 41 41 H 1.08998 * 113.61326 * 89.11350 * 23 22 8 42 42 H 1.08999 * 113.61696 * 270.88941 * 24 23 22 43 43 H 1.08997 * 113.61818 * 139.97764 * 24 23 22 44 44 H 1.09000 * 115.54849 * 34.32528 * 25 2 1 45 45 H 1.09000 * 117.49626 * 359.97438 * 26 25 2 46 46 H 1.09003 * 117.49563 * 145.01932 * 26 25 2 47 47 H 1.09005 * 117.49826 * 214.97651 * 27 25 2 48 48 H 1.08994 * 117.49818 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2501 -2.4546 7 6 2.1954 -0.9404 -3.6508 8 6 1.5845 -0.2962 -4.8968 9 7 0.1343 -0.1170 -4.7917 10 6 -0.6752 -1.1930 -4.7348 11 8 -0.2131 -2.3070 -4.8624 12 6 -2.1539 -1.0123 -4.5067 13 16 -2.9627 -2.6314 -4.4806 14 6 -4.6310 -2.1355 -4.2056 15 1 -4.8740 -1.0877 -4.1088 16 6 -5.6329 -3.0917 -4.1133 17 7 -5.3368 -4.3688 -4.2317 18 14 -7.4014 -2.5662 -3.8210 19 1 -7.8464 -1.6864 -4.9316 20 1 -8.2716 -3.7680 -3.7619 21 1 -7.4922 -1.8263 -2.5367 22 6 2.3284 0.9644 -5.3684 23 6 2.1084 0.4613 -6.8049 24 6 2.0300 -0.9557 -6.2127 25 6 2.0400 -0.7212 1.2492 26 6 2.7419 0.1226 2.3150 27 6 3.5550 -0.8286 1.4339 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1493 0.5389 -2.5436 32 1 1.9080 -1.9909 -3.6069 33 1 3.2817 -0.8625 -3.6969 34 1 -0.2433 0.7760 -4.7630 35 1 -2.3156 -0.5104 -3.5527 36 1 -2.5745 -0.4085 -5.3107 37 1 -6.0369 -5.0370 -4.1668 38 1 1.8010 1.8919 -5.1451 39 1 3.3765 0.9901 -5.0704 40 1 2.9678 0.6147 -7.4576 41 1 1.1727 0.8016 -7.2482 42 1 2.9965 -1.4551 -6.1454 43 1 1.2616 -1.5785 -6.6708 44 1 1.4310 -1.5584 1.5902 45 1 2.8407 1.1916 2.1260 46 1 2.5946 -0.1593 3.3576 47 1 3.9425 -1.7360 1.8971 48 1 4.1883 -0.3858 0.6653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062761334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -36.531675 kcal Electronic energy + Delta-G solvation = -27879.747205 eV Core-core repulsion = 24062.120590 eV Total energy + Delta-G solvation = -3817.626614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76779 -39.76078 -37.86588 -37.11522 -34.48401 -33.07179 -32.45042 -32.43808 -29.32654 -27.79231 -25.98046 -25.50756 -24.82497 -23.05232 -22.43303 -21.48790 -20.75227 -19.90730 -19.15163 -17.87868 -17.33776 -16.40929 -16.38612 -15.86985 -15.51665 -15.25625 -15.03288 -14.82649 -14.65871 -14.43592 -14.26146 -13.88469 -13.56711 -13.33016 -12.91778 -12.71331 -12.55766 -12.52768 -12.33851 -12.19519 -11.89354 -11.70160 -11.65228 -11.19728 -11.11374 -11.06848 -11.05816 -10.95349 -10.79024 -10.53480 -10.51056 -10.18399 -9.84954 -9.59365 -9.40026 -9.08373 -8.98787 -8.94062 -8.26123 -6.52060 -6.23424 -3.94306 2.69194 2.88097 3.04023 3.10770 3.21460 3.25561 3.28221 3.62127 3.80173 4.17454 4.19322 4.37896 4.41538 4.54812 4.65802 4.69111 4.74400 4.94976 5.00252 5.07351 5.11648 5.13152 5.25358 5.36187 5.39666 5.46327 5.49510 5.52128 5.63296 5.64672 5.65820 5.74441 5.82158 5.83725 5.87315 5.94843 5.96792 6.02759 6.05732 6.08802 6.09876 6.16591 6.40543 6.68157 7.48839 7.56718 7.62947 8.27289 8.32567 8.57185 9.21654 10.83831 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.003409 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.808932 B = 8211.024662 C =10574.107929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.093 0.907 4 C 0.515 3.485 5 O -0.531 6.531 6 N -0.723 5.723 7 C 0.122 3.878 8 C 0.144 3.856 9 N -0.721 5.721 10 C 0.536 3.464 11 O -0.505 6.505 12 C -0.153 4.153 13 S -0.056 6.056 14 C -0.537 4.537 15 H 0.071 0.929 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.184 4.184 27 C -0.156 4.156 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.396 0.604 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.398 0.602 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.738 16.358 4.205 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 H 0.111 0.889 4 C 0.301 3.699 5 O -0.406 6.406 6 N -0.375 5.375 7 C -0.002 4.002 8 C 0.056 3.944 9 N -0.376 5.376 10 C 0.322 3.678 11 O -0.377 6.377 12 C -0.304 4.304 13 S 0.170 5.830 14 C -0.686 4.686 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.744 3.256 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.174 4.174 23 C -0.176 4.176 24 C -0.173 4.173 25 C -0.152 4.152 26 C -0.221 4.221 27 C -0.193 4.193 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.950 13.549 4.073 22.855 hybrid contribution -2.248 2.431 0.257 3.321 sum 15.702 15.980 4.330 22.818 Atomic orbital electron populations 1.21755 0.92103 1.03591 1.02553 1.20884 0.97787 0.99490 0.91804 0.88923 1.20603 0.80173 0.84723 0.84396 1.90702 1.37564 1.25715 1.86647 1.45826 1.54079 1.32055 1.05533 1.21635 0.97736 0.98406 0.82465 1.21458 0.81312 0.97329 0.94321 1.45724 1.04658 1.09354 1.77899 1.20283 0.88042 0.84202 0.75285 1.90713 1.76391 1.24129 1.46491 1.23535 0.94008 1.08421 1.04451 1.85449 1.03141 0.99820 1.94544 1.22818 0.92671 0.95539 1.57541 0.91043 1.24984 0.99413 0.94482 0.94628 1.70007 1.33869 0.99954 1.46372 0.86240 0.82341 0.78118 0.78896 1.19947 1.20791 1.19935 1.23267 1.00872 0.96419 0.96848 1.22829 1.02189 0.96708 0.95899 1.23173 1.02547 0.96871 0.94750 1.21950 0.96070 1.01538 0.95654 1.23090 1.05326 0.97362 0.96358 1.22765 0.93662 1.01030 1.01855 0.92114 0.91414 0.91263 0.76993 0.89729 0.91125 0.76721 0.89382 0.89413 0.92098 0.90927 0.88727 0.91158 0.89983 0.89246 0.89712 0.87375 0.89040 0.88809 0.88884 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.07 37.16 0.34 -1.07 16 2 C -0.08 -0.79 2.88 -91.77 -0.26 -1.05 16 3 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 4 C 0.52 6.75 7.03 -10.98 -0.08 6.68 16 5 O -0.53 -9.04 15.07 5.56 0.08 -8.96 16 6 N -0.72 -8.10 5.27 -60.29 -0.32 -8.41 16 7 C 0.12 1.52 4.93 -4.04 -0.02 1.50 16 8 C 0.14 1.50 0.63 -131.01 -0.08 1.42 16 9 N -0.72 -8.29 4.53 -46.86 -0.21 -8.51 16 10 C 0.54 9.19 7.40 -10.99 -0.08 9.10 16 11 O -0.50 -10.76 13.86 5.56 0.08 -10.68 16 12 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 13 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 14 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 15 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 18 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.14 -0.98 7.37 -25.92 -0.19 -1.17 16 23 C -0.14 -1.14 7.99 -25.92 -0.21 -1.35 16 24 C -0.13 -1.48 6.95 -25.92 -0.18 -1.66 16 25 C -0.13 -1.43 4.72 -90.62 -0.43 -1.85 16 26 C -0.18 -1.57 10.18 -26.71 -0.27 -1.84 16 27 C -0.16 -1.64 8.97 -26.71 -0.24 -1.88 16 28 H 0.06 0.54 7.57 -51.93 -0.39 0.15 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.40 3.47 7.53 -40.82 -0.31 3.16 16 32 H 0.08 1.42 7.34 -51.93 -0.38 1.04 16 33 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 34 H 0.40 3.36 8.67 -40.82 -0.35 3.00 16 35 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 36 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 38 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 39 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.08 1.20 7.19 -51.93 -0.37 0.83 16 44 H 0.11 1.25 8.11 -51.93 -0.42 0.83 16 45 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -35.45 406.49 -10.10 -45.55 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.07 Total: 6.35 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.29 Total: -8.65 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.20 Total: -42.19 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.16 Total: -19.64 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.45 -10.10 -45.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062761334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.021 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds