Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 C 1.50707 * 109.46982 * 239.99687 * 2 1 3 5 5 O 1.21274 * 120.00267 * 240.00073 * 4 2 1 6 6 N 1.34775 * 119.99915 * 60.00085 * 4 2 1 7 7 C 1.46503 * 120.00333 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47348 * 174.95954 * 7 6 4 9 9 N 1.46498 * 112.85172 * 311.51799 * 8 7 6 10 10 C 1.34771 * 119.99901 * 294.02065 * 9 8 7 11 11 O 1.21280 * 120.00040 * 354.96396 * 10 9 8 12 12 C 1.50703 * 120.00219 * 174.69410 * 10 9 8 13 13 S 1.80998 * 109.47305 * 180.02562 * 12 10 9 14 14 C 1.76203 * 99.99790 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00223 * 359.97438 * 14 13 12 16 16 C 1.38800 * 119.99940 * 179.97438 * 14 13 12 17 17 N 1.31635 * 119.99899 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00283 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47286 * 59.99891 * 18 16 14 20 20 H 1.48497 * 109.47414 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47243 * 300.00254 * 18 16 14 22 22 C 1.53781 * 113.68796 * 82.78649 * 8 7 6 23 23 C 1.53785 * 87.08102 * 139.99242 * 22 8 7 24 24 C 1.53779 * 87.08062 * 334.56543 * 23 22 8 25 25 C 1.52998 * 109.47178 * 119.99939 * 2 1 3 26 26 C 1.52995 * 117.49928 * 248.61997 * 25 2 1 27 27 C 1.53001 * 117.49879 * 179.97438 * 25 2 1 28 28 H 1.09005 * 109.47418 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47004 * 300.00186 * 1 2 3 31 31 H 0.97007 * 120.00133 * 0.02562 * 6 4 2 32 32 H 1.08998 * 109.46437 * 54.96076 * 7 6 4 33 33 H 1.09003 * 109.46764 * 294.96345 * 7 6 4 34 34 H 0.96996 * 120.00407 * 114.01782 * 9 8 7 35 35 H 1.09001 * 109.46626 * 299.99714 * 12 10 9 36 36 H 1.08996 * 109.47087 * 59.99216 * 12 10 9 37 37 H 0.97003 * 119.99992 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61721 * 254.53682 * 22 8 7 39 39 H 1.09000 * 113.61705 * 25.44570 * 22 8 7 40 40 H 1.09003 * 113.61467 * 220.02000 * 23 22 8 41 41 H 1.08998 * 113.61326 * 89.11350 * 23 22 8 42 42 H 1.08999 * 113.61696 * 270.88941 * 24 23 22 43 43 H 1.08997 * 113.61818 * 139.97764 * 24 23 22 44 44 H 1.09000 * 115.54849 * 34.32528 * 25 2 1 45 45 H 1.09000 * 117.49626 * 359.97438 * 26 25 2 46 46 H 1.09003 * 117.49563 * 145.01932 * 26 25 2 47 47 H 1.09005 * 117.49826 * 214.97651 * 27 25 2 48 48 H 1.08994 * 117.49818 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2501 -2.4546 7 6 2.1954 -0.9404 -3.6508 8 6 1.5845 -0.2962 -4.8968 9 7 0.1343 -0.1170 -4.7917 10 6 -0.6752 -1.1930 -4.7348 11 8 -0.2131 -2.3070 -4.8624 12 6 -2.1539 -1.0123 -4.5067 13 16 -2.9627 -2.6314 -4.4806 14 6 -4.6310 -2.1355 -4.2056 15 1 -4.8740 -1.0877 -4.1088 16 6 -5.6329 -3.0917 -4.1133 17 7 -5.3368 -4.3688 -4.2317 18 14 -7.4014 -2.5662 -3.8210 19 1 -7.8464 -1.6864 -4.9316 20 1 -8.2716 -3.7680 -3.7619 21 1 -7.4922 -1.8263 -2.5367 22 6 2.3284 0.9644 -5.3684 23 6 2.1084 0.4613 -6.8049 24 6 2.0300 -0.9557 -6.2127 25 6 2.0400 -0.7212 1.2492 26 6 2.7419 0.1226 2.3150 27 6 3.5550 -0.8286 1.4339 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1493 0.5389 -2.5436 32 1 1.9080 -1.9909 -3.6069 33 1 3.2817 -0.8625 -3.6969 34 1 -0.2433 0.7760 -4.7630 35 1 -2.3156 -0.5104 -3.5527 36 1 -2.5745 -0.4085 -5.3107 37 1 -6.0369 -5.0370 -4.1668 38 1 1.8010 1.8919 -5.1451 39 1 3.3765 0.9901 -5.0704 40 1 2.9678 0.6147 -7.4576 41 1 1.1727 0.8016 -7.2482 42 1 2.9965 -1.4551 -6.1454 43 1 1.2616 -1.5785 -6.6708 44 1 1.4310 -1.5584 1.5902 45 1 2.8407 1.1916 2.1260 46 1 2.5946 -0.1593 3.3576 47 1 3.9425 -1.7360 1.8971 48 1 4.1883 -0.3858 0.6653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062761334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -61.210348 kcal Electronic energy + Delta-G solvation = -27880.817352 eV Core-core repulsion = 24062.120590 eV Total energy + Delta-G solvation = -3818.696762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79534 -40.78722 -39.08527 -37.97259 -35.53500 -34.58985 -34.28833 -33.28824 -30.73075 -28.84889 -27.65396 -26.73795 -25.65802 -23.95468 -23.18729 -22.48722 -21.83672 -20.87795 -20.16769 -19.82002 -18.27708 -17.81628 -17.36863 -16.88053 -16.87232 -16.56651 -16.35009 -16.02967 -15.92883 -15.55513 -15.31040 -15.05768 -14.75314 -14.65029 -14.39171 -13.86550 -13.59416 -13.49264 -13.26896 -13.21650 -13.16699 -12.87258 -12.76494 -12.68472 -12.60226 -12.36030 -12.02182 -11.87778 -11.82917 -11.72992 -11.37130 -11.35202 -11.12810 -10.97169 -10.77565 -10.61340 -10.25855 -10.06365 -10.05049 -8.66232 -8.34508 -6.12445 1.26206 1.43309 1.46384 1.55293 1.64342 1.67389 2.08035 2.26452 2.30254 2.99742 3.00609 3.30738 3.40848 3.58337 3.62653 3.71667 3.84360 3.90378 3.93044 4.02593 4.17530 4.27770 4.31185 4.35737 4.42962 4.49154 4.51824 4.55959 4.74807 4.81352 4.81873 4.85923 4.87118 4.98735 5.06498 5.07198 5.12942 5.13895 5.18895 5.26181 5.27708 5.34576 5.41149 5.45203 5.67881 6.19209 6.53128 6.57536 7.06728 7.29464 7.30726 8.74325 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.003409 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.808932 B = 8211.024662 C =10574.107929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 H 0.128 0.872 4 C 0.506 3.494 5 O -0.579 6.579 6 N -0.710 5.710 7 C 0.128 3.872 8 C 0.138 3.862 9 N -0.692 5.692 10 C 0.538 3.462 11 O -0.554 6.554 12 C -0.128 4.128 13 S -0.154 6.154 14 C -0.545 4.545 15 H 0.084 0.916 16 C 0.013 3.987 17 N -0.913 5.913 18 Si 0.997 3.003 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.261 1.261 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.172 4.172 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.420 0.580 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.270 0.730 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.618 21.356 4.675 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 H 0.146 0.854 4 C 0.294 3.706 5 O -0.458 6.458 6 N -0.362 5.362 7 C 0.003 3.997 8 C 0.050 3.950 9 N -0.347 5.347 10 C 0.324 3.676 11 O -0.431 6.431 12 C -0.280 4.280 13 S 0.073 5.927 14 C -0.693 4.693 15 H 0.102 0.898 16 C -0.192 4.192 17 N -0.550 5.550 18 Si 0.819 3.181 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.185 1.185 22 C -0.148 4.148 23 C -0.166 4.166 24 C -0.187 4.187 25 C -0.174 4.174 26 C -0.190 4.190 27 C -0.209 4.209 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.248 0.752 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.258 0.742 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.132 0.868 46 H 0.122 0.878 47 H 0.102 0.898 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.830 18.645 4.531 26.193 hybrid contribution -2.085 0.861 0.086 2.258 sum 15.744 19.505 4.617 25.488 Atomic orbital electron populations 1.21756 0.91855 1.01880 1.04253 1.20895 0.97727 1.00589 0.89687 0.85440 1.21307 0.79406 0.84239 0.85674 1.90683 1.39876 1.27899 1.87363 1.45726 1.53680 1.32087 1.04757 1.21490 0.98580 0.95849 0.83824 1.21661 0.80330 0.99936 0.93057 1.45361 1.04902 1.08869 1.75613 1.20017 0.87729 0.84678 0.75182 1.90718 1.76922 1.26427 1.48996 1.23367 0.94667 1.03496 1.06433 1.85689 1.04964 1.07178 1.94897 1.23171 0.92772 0.96189 1.57126 0.89765 1.26133 1.04673 0.94333 0.94062 1.70191 1.35454 1.01466 1.47842 0.85023 0.75737 0.77864 0.79506 1.18512 1.20649 1.18518 1.23224 1.01485 0.95272 0.94820 1.22799 1.02996 0.93796 0.96983 1.23259 1.01579 0.98380 0.95509 1.21988 0.95892 1.02290 0.97216 1.23178 1.01763 0.97949 0.96066 1.22743 0.93541 1.01790 1.02857 0.90812 0.94797 0.89143 0.75186 0.95116 0.89943 0.74180 0.87219 0.87254 0.92097 0.87944 0.86978 0.89410 0.90015 0.88833 0.93681 0.89363 0.86762 0.87785 0.89824 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.07 71.98 0.65 -1.89 16 2 C -0.07 -1.27 2.88 -11.54 -0.03 -1.30 16 3 H 0.13 1.51 7.90 -2.39 -0.02 1.49 16 4 C 0.51 13.21 7.03 87.66 0.62 13.82 16 5 O -0.58 -20.70 15.07 -3.01 -0.05 -20.74 16 6 N -0.71 -15.08 5.27 -463.06 -2.44 -17.52 16 7 C 0.13 3.17 4.93 86.38 0.43 3.60 16 8 C 0.14 2.67 0.63 4.13 0.00 2.67 16 9 N -0.69 -14.64 4.53 -420.55 -1.91 -16.55 16 10 C 0.54 18.52 7.40 87.66 0.65 19.17 16 11 O -0.55 -24.99 13.86 -3.03 -0.04 -25.03 16 12 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 13 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 14 C -0.54 -30.73 9.50 67.95 0.65 -30.08 16 15 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 16 C 0.01 0.72 5.49 84.86 0.47 1.18 16 17 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 18 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 C -0.11 -1.11 7.37 31.12 0.23 -0.88 16 23 C -0.13 -1.72 7.99 31.12 0.25 -1.47 16 24 C -0.15 -3.24 6.95 31.12 0.22 -3.02 16 25 C -0.16 -3.24 4.72 -10.80 -0.05 -3.29 16 26 C -0.15 -2.24 10.18 30.61 0.31 -1.93 16 27 C -0.17 -3.59 8.97 30.61 0.27 -3.31 16 28 H 0.07 1.12 7.57 -2.38 -0.02 1.10 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.41 5.98 7.53 -92.70 -0.70 5.28 16 32 H 0.03 1.11 7.34 -2.39 -0.02 1.09 16 33 H 0.08 1.84 7.94 -2.39 -0.02 1.82 16 34 H 0.42 5.42 8.67 -92.71 -0.80 4.62 16 35 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 36 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 37 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.10 0.53 8.09 -2.39 -0.02 0.51 16 39 H 0.11 0.87 7.96 -2.39 -0.02 0.85 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 43 H 0.04 1.35 7.19 -2.39 -0.02 1.33 16 44 H 0.09 2.15 8.11 -2.39 -0.02 2.13 16 45 H 0.11 1.19 8.05 -2.39 -0.02 1.17 16 46 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.08 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -85.24 406.49 1.27 -83.97 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.54 Total: 27.56 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 5.09 Total: -11.12 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -4.06 Total: -90.23 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.09 Total: -45.78 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -85.24 1.27 -83.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062761334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.758 kcal (2) G-P(sol) polarization free energy of solvation -85.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds