Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46632 * 2 1 4 4 C 1.50702 * 109.46885 * 240.00027 * 2 1 3 5 5 O 1.21280 * 120.00051 * 239.99600 * 4 2 1 6 6 N 1.34776 * 119.99835 * 59.99514 * 4 2 1 7 7 C 1.46498 * 119.99723 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.50203 * 325.06451 * 7 6 4 9 9 C 1.53041 * 109.49890 * 205.00100 * 7 6 4 10 10 C 1.53042 * 109.54265 * 178.68009 * 9 7 6 11 11 C 1.53197 * 109.30663 * 61.36542 * 10 9 7 12 12 N 1.46920 * 108.77748 * 305.36593 * 11 10 9 13 13 C 1.34776 * 120.63242 * 233.60894 * 12 11 10 14 14 O 1.21283 * 120.00370 * 180.02562 * 13 12 11 15 15 C 1.50704 * 119.99783 * 0.02562 * 13 12 11 16 16 S 1.81001 * 109.46738 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99571 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99836 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99820 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47183 * 60.00018 * 21 19 17 23 23 H 1.48491 * 109.47222 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47386 * 300.00246 * 21 19 17 25 25 C 1.46930 * 118.74045 * 53.60857 * 12 11 10 26 26 C 1.52996 * 109.47247 * 119.99945 * 2 1 3 27 27 C 1.53002 * 117.49888 * 231.25372 * 26 2 1 28 28 C 1.53000 * 117.50107 * 299.91134 * 26 2 1 29 29 H 1.08998 * 109.47808 * 60.00330 * 1 2 3 30 30 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46786 * 299.99957 * 1 2 3 32 32 H 0.96994 * 120.00289 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.46297 * 298.70910 * 9 7 6 34 34 H 1.09010 * 109.46092 * 58.66468 * 9 7 6 35 35 H 1.08991 * 109.50087 * 181.31551 * 10 9 7 36 36 H 1.08994 * 109.49601 * 301.38861 * 10 9 7 37 37 H 1.09004 * 109.58668 * 65.15428 * 11 10 9 38 38 H 1.09001 * 109.58696 * 185.43515 * 11 10 9 39 39 H 1.09000 * 109.47341 * 299.99973 * 15 13 12 40 40 H 1.08994 * 109.46613 * 60.00084 * 15 13 12 41 41 H 0.97002 * 119.99871 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.58623 * 186.60113 * 25 12 11 43 43 H 1.09005 * 109.58675 * 66.17607 * 25 12 11 44 44 H 1.09002 * 115.54951 * 85.58346 * 26 2 1 45 45 H 1.09000 * 117.49996 * 215.00804 * 27 26 2 46 46 H 1.08999 * 117.49664 * 0.02562 * 27 26 2 47 47 H 1.09008 * 117.49673 * 359.97438 * 28 26 2 48 48 H 1.08999 * 117.49942 * 144.97366 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7066 -0.2500 -2.4546 7 6 2.1953 -0.9403 -3.6507 8 1 3.1943 -1.3332 -3.4615 9 6 2.2468 0.0427 -4.8226 10 6 2.7883 -0.6691 -6.0645 11 6 1.8485 -1.8195 -6.4391 12 7 1.6791 -2.6919 -5.2692 13 6 1.9138 -4.0160 -5.3602 14 8 1.7699 -4.7257 -4.3873 15 6 2.3551 -4.6146 -6.6710 16 16 2.5857 -6.3988 -6.4720 17 6 3.0847 -6.8269 -8.1069 18 1 3.1637 -6.0619 -8.8650 19 6 3.3773 -8.1472 -8.4198 20 7 3.2815 -9.0794 -7.4955 21 14 3.9070 -8.6009 -10.1527 22 1 5.1504 -7.8662 -10.4986 23 1 4.1583 -10.0625 -10.2268 24 1 2.8330 -8.2347 -11.1105 25 6 1.2489 -2.0936 -3.9981 26 6 2.0401 -0.7212 1.2492 27 6 3.0764 0.0040 2.1100 28 6 1.6376 -0.1483 2.6096 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1492 0.5388 -2.5436 33 1 1.2436 0.4170 -5.0270 34 1 2.9006 0.8771 -4.5684 35 1 2.8466 0.0373 -6.8924 36 1 3.7817 -1.0646 -5.8529 37 1 0.8804 -1.4177 -6.7386 38 1 2.2784 -2.3890 -7.2631 39 1 1.5946 -4.4293 -7.4295 40 1 3.2955 -4.1586 -6.9803 41 1 3.4863 -10.0020 -7.7142 42 1 1.2844 -2.8456 -3.2098 43 1 0.2320 -1.7142 -4.0985 44 1 2.1254 -1.8046 1.1647 45 1 3.8435 -0.6022 2.5918 46 1 3.3945 0.9951 1.7866 47 1 1.0097 0.7428 2.6146 48 1 1.4576 -0.8548 3.4199 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -58.140976 kcal Electronic energy + Delta-G solvation = -27265.227318 eV Core-core repulsion = 23446.663654 eV Total energy + Delta-G solvation = -3818.563664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61179 -39.61347 -37.80975 -37.00640 -34.74810 -32.85884 -32.40698 -32.11613 -30.46157 -28.59253 -25.57190 -25.50545 -25.05831 -23.44397 -22.57404 -21.58960 -21.07819 -19.86126 -19.04470 -17.74896 -17.59131 -16.76975 -16.36044 -15.85194 -15.55277 -15.30501 -14.98418 -14.78407 -14.73381 -14.38191 -14.05891 -13.89278 -13.74105 -13.33937 -13.23953 -13.05249 -12.84631 -12.61701 -12.49726 -12.33497 -11.92168 -11.76588 -11.74767 -11.33435 -11.28368 -11.21088 -11.02260 -11.01734 -10.82700 -10.73753 -10.64934 -10.32972 -9.88968 -9.79599 -9.49964 -9.27981 -9.03703 -8.45879 -8.19222 -6.47222 -6.18801 -3.89472 2.45201 2.68893 3.06628 3.10966 3.24864 3.28136 3.31085 3.52242 3.63948 4.22223 4.23042 4.31065 4.44508 4.54752 4.59192 4.68219 4.73970 4.83132 4.87031 4.99827 5.04181 5.06133 5.13604 5.15917 5.24749 5.29094 5.32395 5.35255 5.47599 5.53621 5.56171 5.61629 5.67156 5.69793 5.74897 5.79129 5.81409 5.89659 5.97064 6.00161 6.05373 6.13030 6.20323 6.65950 7.25176 7.57429 7.61503 8.05163 8.37236 8.60380 9.25918 10.88548 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.002212 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.448425 B =12655.519724 C =13628.540267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.095 0.905 4 C 0.516 3.484 5 O -0.522 6.522 6 N -0.727 5.727 7 C 0.131 3.869 8 H 0.093 0.907 9 C -0.124 4.124 10 C -0.132 4.132 11 C 0.105 3.895 12 N -0.619 5.619 13 C 0.534 3.466 14 O -0.511 6.511 15 C -0.149 4.149 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.106 3.894 26 C -0.136 4.136 27 C -0.178 4.178 28 C -0.178 4.178 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 27.510 11.393 30.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 H 0.113 0.887 4 C 0.302 3.698 5 O -0.396 6.396 6 N -0.379 5.379 7 C 0.025 3.975 8 H 0.111 0.889 9 C -0.162 4.162 10 C -0.171 4.171 11 C -0.018 4.018 12 N -0.356 5.356 13 C 0.322 3.678 14 O -0.384 6.384 15 C -0.300 4.300 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.018 4.018 26 C -0.155 4.155 27 C -0.215 4.215 28 C -0.215 4.215 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.349 25.498 12.975 29.105 hybrid contribution 0.262 1.043 -2.358 2.592 sum -5.087 26.540 10.616 29.034 Atomic orbital electron populations 1.21764 0.92467 1.03277 1.02466 1.20851 0.97445 0.99774 0.91880 0.88681 1.20605 0.80066 0.84675 0.84454 1.90780 1.36797 1.25606 1.86445 1.45977 1.54482 1.32044 1.05409 1.21331 0.99514 0.92650 0.83969 0.88856 1.21792 1.02090 0.97901 0.94454 1.21898 1.00087 0.97641 0.97497 1.21750 0.99512 0.91920 0.88624 1.48030 1.69910 1.07210 1.10416 1.20370 0.76165 0.80837 0.90442 1.90714 1.49897 1.59243 1.38572 1.23547 1.03705 1.05972 0.96747 1.85464 1.88469 0.93125 1.16322 1.22816 1.53198 0.96261 0.96096 0.91001 1.24995 0.95007 0.95308 0.98301 1.70012 1.45614 1.01477 1.33131 0.86226 0.79091 0.77493 0.82692 1.19944 1.20826 1.19958 1.21820 0.96444 0.96050 0.87511 1.22073 1.03429 1.00398 0.89596 1.23019 0.92615 1.01765 1.04067 1.22983 0.98132 1.03171 0.97218 0.92135 0.91607 0.91289 0.76713 0.91182 0.91055 0.90037 0.90863 0.91414 0.88899 0.89266 0.89242 0.92133 0.88431 0.91942 0.86393 0.88658 0.88978 0.88813 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.93 37.16 0.33 -0.49 16 2 C -0.08 -0.59 2.88 -91.77 -0.26 -0.85 16 3 H 0.10 0.53 7.90 -51.93 -0.41 0.12 16 4 C 0.52 5.65 7.12 -10.98 -0.08 5.57 16 5 O -0.52 -8.48 15.31 5.56 0.09 -8.40 16 6 N -0.73 -6.11 4.97 -53.69 -0.27 -6.38 16 7 C 0.13 1.38 2.60 -67.81 -0.18 1.20 16 8 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 9 C -0.12 -0.90 5.35 -26.69 -0.14 -1.04 16 10 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 11 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 12 N -0.62 -9.11 2.97 -172.76 -0.51 -9.63 16 13 C 0.53 10.68 7.72 -10.98 -0.08 10.60 16 14 O -0.51 -12.48 15.27 5.55 0.08 -12.39 16 15 C -0.15 -3.10 4.50 36.01 0.16 -2.94 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.53 13.22 55.49 0.73 -25.79 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.11 1.41 6.01 -3.71 -0.02 1.39 16 26 C -0.14 -1.22 4.75 -90.62 -0.43 -1.65 16 27 C -0.18 -1.38 10.18 -26.69 -0.27 -1.65 16 28 C -0.18 -1.20 9.74 -26.70 -0.26 -1.46 16 29 H 0.06 0.25 7.56 -51.93 -0.39 -0.14 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.31 7.29 -51.93 -0.38 -0.06 16 32 H 0.40 1.97 8.02 -40.82 -0.33 1.64 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.01 5.95 -51.93 -0.31 0.70 16 39 H 0.09 1.70 7.94 -51.92 -0.41 1.28 16 40 H 0.09 1.71 7.70 -51.92 -0.40 1.31 16 41 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.10 1.69 7.00 -51.93 -0.36 1.33 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.12 1.37 7.47 -51.93 -0.39 0.98 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 47 H 0.09 0.50 7.61 -51.92 -0.40 0.10 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -37.53 399.87 -10.25 -47.78 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.94 Total: 0.72 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.22 Total: -4.60 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.05 Total: -41.80 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.53 -10.25 -47.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.362 kcal (2) G-P(sol) polarization free energy of solvation -37.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds