Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47167 * 2 1 4 4 C 1.50707 * 109.47079 * 240.00645 * 2 1 3 5 5 O 1.21283 * 119.99590 * 265.18408 * 4 2 1 6 6 N 1.34770 * 119.99969 * 85.18281 * 4 2 1 7 7 C 1.46933 * 120.63157 * 174.84652 * 6 4 2 8 8 C 1.53185 * 108.77870 * 233.61117 * 7 6 4 9 9 C 1.53047 * 109.31212 * 305.36463 * 8 7 6 10 10 C 1.53040 * 109.53577 * 61.36798 * 9 8 7 11 11 H 1.08990 * 109.50144 * 58.61871 * 10 9 8 12 12 N 1.46506 * 109.49537 * 178.68446 * 10 9 8 13 13 C 1.34778 * 119.99740 * 274.99818 * 12 10 9 14 14 O 1.21282 * 120.00139 * 359.97438 * 13 12 10 15 15 C 1.50696 * 119.99531 * 179.97438 * 13 12 10 16 16 S 1.81008 * 109.46833 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99998 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00060 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99603 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00076 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46810 * 269.99876 * 21 19 17 23 23 H 1.48497 * 109.47044 * 29.99957 * 21 19 17 24 24 H 1.48504 * 109.47108 * 150.00124 * 21 19 17 25 25 C 1.46922 * 120.63253 * 354.85226 * 6 4 2 26 26 C 1.52998 * 109.47258 * 120.00436 * 2 1 3 27 27 C 1.53000 * 117.49965 * 248.61853 * 26 2 1 28 28 C 1.52996 * 60.00145 * 252.51124 * 27 26 2 29 29 H 1.08996 * 109.47073 * 59.96100 * 1 2 3 30 30 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46727 * 299.96336 * 1 2 3 32 32 H 1.08996 * 109.58412 * 113.81635 * 7 6 4 33 33 H 1.08999 * 109.69986 * 353.46882 * 7 6 4 34 34 H 1.08992 * 109.49933 * 185.41350 * 8 7 6 35 35 H 1.09003 * 109.52244 * 65.33063 * 8 7 6 36 36 H 1.08994 * 109.45778 * 301.34642 * 9 8 7 37 37 H 1.08998 * 109.45510 * 181.38404 * 9 8 7 38 38 H 0.97000 * 119.99785 * 94.99139 * 12 10 9 39 39 H 1.09001 * 109.47346 * 60.00203 * 15 13 12 40 40 H 1.08995 * 109.47338 * 299.99648 * 15 13 12 41 41 H 0.97006 * 119.99843 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.58609 * 6.60080 * 25 6 4 43 43 H 1.09010 * 109.58508 * 246.17777 * 25 6 4 44 44 H 1.09004 * 115.55047 * 34.33048 * 26 2 1 45 45 H 1.09000 * 117.50093 * 0.02562 * 27 26 2 46 46 H 1.09001 * 117.49505 * 145.01822 * 27 26 2 47 47 H 1.08995 * 117.50138 * 252.50987 * 28 27 26 48 48 H 1.09002 * 117.50084 * 107.49233 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3176 -1.8879 -1.1770 6 7 2.1645 -0.0370 -2.3905 7 6 2.7580 -0.6843 -3.5685 8 6 3.9075 0.1875 -4.0836 9 6 3.3920 1.6058 -4.3387 10 6 2.8793 2.2074 -3.0282 11 1 3.6845 2.2193 -2.2938 12 7 2.4151 3.5762 -3.2673 13 6 3.2924 4.5992 -3.2429 14 8 4.4659 4.3865 -3.0227 15 6 2.8149 6.0071 -3.4894 16 16 4.2184 7.1460 -3.3907 17 6 3.3971 8.6720 -3.7092 18 1 2.3320 8.6850 -3.8880 19 6 4.1186 9.8575 -3.7292 20 7 5.4166 9.8416 -3.5107 21 14 3.2478 11.4753 -4.0662 22 1 3.2460 11.7415 -5.5272 23 1 1.8484 11.3958 -3.5758 24 1 3.9568 12.5749 -3.3636 25 6 1.7181 1.3584 -2.5012 26 6 2.0400 -0.7213 1.2492 27 6 2.7420 0.1224 2.3151 28 6 3.5550 -0.8282 1.4341 29 1 -0.3633 0.5144 -0.8896 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 2.0023 -0.7900 -4.3469 33 1 3.1398 -1.6677 -3.2941 34 1 4.2940 -0.2317 -5.0125 35 1 4.7033 0.2180 -3.3393 36 1 2.5800 1.5718 -5.0649 37 1 4.2023 2.2219 -4.7286 38 1 1.4765 3.7463 -3.4431 39 1 2.0748 6.2769 -2.7360 40 1 2.3646 6.0699 -4.4800 41 1 5.9208 10.6702 -3.5244 42 1 1.4142 1.7237 -1.5202 43 1 0.8776 1.4194 -3.1926 44 1 1.4311 -1.5587 1.5901 45 1 2.8401 1.1915 2.1266 46 1 2.5947 -0.1596 3.3576 47 1 3.9428 -1.7356 1.8971 48 1 4.1884 -0.3846 0.6659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070596129.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = -79.846047 kcal Electronic energy + Delta-G solvation = -27518.787608 eV Core-core repulsion = 23699.282742 eV Total energy + Delta-G solvation = -3819.504867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71414 -40.65188 -38.84253 -37.82667 -35.49887 -34.56752 -34.28436 -32.71670 -31.78415 -29.62970 -27.63685 -26.96106 -25.31950 -24.16141 -23.30058 -22.82683 -21.69895 -21.25788 -20.01199 -19.61419 -18.39194 -17.93014 -17.46574 -16.96842 -16.86112 -16.44035 -16.27957 -16.01064 -15.73292 -15.51155 -15.40265 -15.16957 -14.74118 -14.57347 -14.47096 -14.07960 -13.83637 -13.55994 -13.37365 -13.16734 -13.14682 -12.88327 -12.75484 -12.60426 -12.53838 -12.45270 -12.29159 -12.00782 -11.95896 -11.87861 -11.70801 -11.38634 -11.12889 -11.11518 -10.94403 -10.58763 -10.24495 -10.16422 -9.70869 -8.64614 -8.33299 -6.10860 1.26966 1.43645 1.46039 1.54070 1.59209 1.63340 1.82640 2.28227 2.34525 2.86322 3.01206 3.33505 3.51602 3.54563 3.66222 3.67608 3.89322 3.92518 3.94989 4.06395 4.12639 4.14930 4.23858 4.30052 4.34765 4.42699 4.47667 4.54947 4.56010 4.68950 4.74710 4.78365 4.80224 4.87506 4.94212 4.95566 5.01227 5.14236 5.17332 5.20333 5.22577 5.33456 5.38603 5.43742 5.52365 6.21400 6.28507 6.52997 7.08451 7.10942 7.27578 8.75780 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.002288 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.199037 B =12237.004014 C =12961.529982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.102 0.898 4 C 0.521 3.479 5 O -0.571 6.571 6 N -0.609 5.609 7 C 0.111 3.889 8 C -0.124 4.124 9 C -0.128 4.128 10 C 0.135 3.865 11 H 0.060 0.940 12 N -0.704 5.704 13 C 0.538 3.462 14 O -0.564 6.564 15 C -0.129 4.129 16 S -0.156 6.156 17 C -0.543 4.543 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.256 1.256 24 H -0.280 1.280 25 C 0.105 3.895 26 C -0.137 4.137 27 C -0.163 4.163 28 C -0.189 4.189 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.420 0.580 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.270 0.730 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.272 -21.342 3.939 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.120 0.880 4 C 0.310 3.690 5 O -0.450 6.450 6 N -0.341 5.341 7 C -0.011 4.011 8 C -0.163 4.163 9 C -0.166 4.166 10 C 0.029 3.971 11 H 0.079 0.921 12 N -0.359 5.359 13 C 0.323 3.677 14 O -0.442 6.442 15 C -0.280 4.280 16 S 0.072 5.928 17 C -0.691 4.691 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.180 1.180 24 H -0.205 1.205 25 C -0.018 4.018 26 C -0.155 4.155 27 C -0.200 4.200 28 C -0.226 4.226 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.258 0.742 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.117 0.883 46 H 0.128 0.872 47 H 0.113 0.887 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.043 -22.252 4.349 26.156 hybrid contribution -1.140 1.333 -0.582 1.848 sum -14.183 -20.919 3.767 25.553 Atomic orbital electron populations 1.21739 0.90183 1.03047 1.04321 1.21032 0.99390 0.99696 0.90246 0.87996 1.21069 0.76552 0.86800 0.84551 1.90663 1.51749 1.17431 1.85164 1.48099 1.61530 1.13028 1.11486 1.21677 0.95791 0.96457 0.87154 1.21826 0.97604 0.94687 1.02178 1.21897 1.01551 0.95822 0.97360 1.21221 0.97504 0.80769 0.97651 0.92127 1.45593 1.12057 1.05096 1.73131 1.20054 0.85700 0.86535 0.75364 1.90712 1.19148 1.85307 1.49028 1.23370 1.03621 0.94254 1.06731 1.85636 1.12665 1.00863 1.93676 1.23204 0.97168 0.92795 1.55949 0.89739 1.26126 0.95629 1.03329 0.94177 1.70190 1.08059 1.29225 1.47439 0.84964 0.78531 0.75995 0.78566 1.19412 1.17998 1.20532 1.22107 0.95729 0.79320 1.04646 1.22046 0.94962 1.02009 0.96487 1.23146 1.02594 0.97532 0.96743 1.22841 0.94127 1.02257 1.03373 0.90501 0.92515 0.89530 0.88994 0.90317 0.88675 0.93401 0.89070 0.93670 0.74164 0.86848 0.87018 0.92082 0.87358 0.87071 0.87247 0.88306 0.87172 0.88714 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.97 71.98 0.65 -0.71 16 2 C -0.08 -1.23 2.02 -11.54 -0.02 -1.26 16 3 H 0.10 1.37 6.24 -2.39 -0.01 1.36 16 4 C 0.52 10.45 6.49 87.66 0.57 11.01 16 5 O -0.57 -15.79 15.51 -3.04 -0.05 -15.84 16 6 N -0.61 -9.87 2.97 -818.89 -2.43 -12.30 16 7 C 0.11 1.74 6.41 86.36 0.55 2.30 16 8 C -0.12 -2.11 6.08 30.67 0.19 -1.92 16 9 C -0.13 -2.39 5.46 30.62 0.17 -2.23 16 10 C 0.13 2.57 2.60 45.07 0.12 2.68 16 11 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 12 N -0.70 -14.30 5.08 -442.16 -2.25 -16.54 16 13 C 0.54 17.90 7.81 87.66 0.68 18.59 16 14 O -0.56 -24.76 15.53 -3.04 -0.05 -24.81 16 15 C -0.13 -4.67 6.16 71.23 0.44 -4.23 16 16 S -0.16 -8.36 20.57 -56.49 -1.16 -9.52 16 17 C -0.54 -30.11 9.50 67.95 0.65 -29.47 16 18 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 19 C 0.01 0.67 5.49 84.86 0.47 1.14 16 20 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 21 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.11 1.24 5.32 86.36 0.46 1.70 16 26 C -0.14 -2.28 4.60 -10.79 -0.05 -2.33 16 27 C -0.16 -2.43 10.18 30.59 0.31 -2.12 16 28 C -0.19 -3.66 9.66 30.59 0.30 -3.36 16 29 H 0.08 0.54 7.36 -2.39 -0.02 0.52 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.52 7.05 -2.39 -0.02 1.50 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.42 5.04 8.60 -92.71 -0.80 4.24 16 39 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 40 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 41 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 42 H 0.11 1.03 5.09 -2.39 -0.01 1.01 16 43 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.11 1.81 8.11 -2.39 -0.02 1.79 16 45 H 0.10 1.43 8.05 -2.39 -0.02 1.41 16 46 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -80.82 400.56 2.00 -78.82 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.16 Total: 20.87 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.47 Total: -10.21 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -4.39 Total: -83.96 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.09 Total: -40.65 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -80.82 2.00 -78.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070596129.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.030 kcal (2) G-P(sol) polarization free energy of solvation -80.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds