Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.88587 * 2 1 4 4 C 1.54907 * 111.03767 * 123.90486 * 2 1 3 5 5 N 1.47423 * 104.83602 * 155.10220 * 4 2 1 6 6 C 1.34769 * 125.65233 * 155.91359 * 5 4 2 7 7 O 1.21287 * 119.99898 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00286 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47394 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46879 * 180.02562 * 9 8 6 11 11 C 1.53004 * 117.49745 * 243.74514 * 10 9 8 12 12 C 1.53005 * 117.49606 * 175.08482 * 10 9 8 13 13 C 1.47318 * 108.73116 * 335.71415 * 5 4 2 14 14 C 1.54321 * 107.12313 * 1.30410 * 13 5 4 15 15 H 1.09003 * 110.72096 * 263.52133 * 14 13 5 16 16 N 1.46499 * 110.72318 * 140.42823 * 14 13 5 17 17 C 1.34778 * 120.00278 * 88.83851 * 16 14 13 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99753 * 25 23 21 27 27 H 1.48497 * 109.46782 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00030 * 25 23 21 29 29 H 1.09003 * 109.47040 * 183.87715 * 1 2 3 30 30 H 1.08994 * 109.47477 * 303.87699 * 1 2 3 31 31 H 1.08998 * 109.47055 * 63.88490 * 1 2 3 32 32 H 1.09006 * 110.36663 * 273.93936 * 4 2 1 33 33 H 1.08999 * 110.36710 * 36.26105 * 4 2 1 34 34 H 1.08996 * 109.47198 * 300.00079 * 8 6 5 35 35 H 1.09010 * 109.46703 * 59.99667 * 8 6 5 36 36 H 1.09003 * 109.46841 * 299.99921 * 9 8 6 37 37 H 1.08999 * 109.46596 * 59.99844 * 9 8 6 38 38 H 1.08998 * 115.55179 * 29.41817 * 10 9 8 39 39 H 1.09004 * 117.49563 * 359.97438 * 11 10 9 40 40 H 1.08993 * 117.49947 * 145.02262 * 11 10 9 41 41 H 1.09000 * 117.50117 * 214.97617 * 12 10 9 42 42 H 1.09003 * 117.49935 * 359.97438 * 12 10 9 43 43 H 1.09007 * 110.06384 * 241.87255 * 13 5 4 44 44 H 1.09006 * 109.84911 * 120.61454 * 13 5 4 45 45 H 0.97000 * 119.99972 * 268.84206 * 16 14 13 46 46 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 47 47 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 48 48 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8065 1.2000 5 7 3.4280 -1.2421 0.7726 6 6 4.4489 -1.5603 1.5929 7 8 4.3024 -1.4989 2.7953 8 6 5.7725 -1.9924 1.0161 9 6 6.7509 -2.2925 2.1535 10 6 8.0948 -2.7305 1.5679 11 6 8.5644 -4.1558 1.8660 12 6 9.2480 -2.9664 2.5453 13 6 3.4676 -1.2769 -0.6997 14 6 2.0862 -0.8074 -1.2025 15 1 1.4455 -1.6612 -1.4232 16 7 2.2278 0.0503 -2.3817 17 6 2.2490 -0.4959 -3.6137 18 8 2.1503 -1.6973 -3.7461 19 6 2.3953 0.3864 -4.8266 20 16 2.3883 -0.6357 -6.3204 21 6 2.5674 0.6156 -7.5480 22 1 2.6431 1.6524 -7.2553 23 6 2.6175 0.2682 -8.8909 24 7 2.5258 -0.9956 -9.2476 25 14 2.8152 1.5940 -10.1919 26 1 4.0865 2.3264 -9.9631 27 1 2.8397 0.9669 -11.5378 28 1 1.6756 2.5426 -10.1090 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3634 0.5728 0.8531 31 1 -0.3633 0.4523 -0.9227 32 1 2.1567 -0.1719 2.0835 33 1 1.4532 -1.6706 1.4022 34 1 5.6305 -2.8887 0.4125 35 1 6.1748 -1.1941 0.3922 36 1 6.8928 -1.3957 2.7568 37 1 6.3487 -3.0904 2.7777 38 1 8.3402 -2.3136 0.5911 39 1 7.9161 -4.7813 2.4797 40 1 9.1191 -4.6765 1.0855 41 1 10.2522 -2.7053 2.2113 42 1 9.0494 -2.8092 3.6055 43 1 3.6622 -2.2925 -1.0446 44 1 4.2434 -0.6040 -1.0651 45 1 2.3065 1.0113 -2.2758 46 1 3.3351 0.9350 -4.7657 47 1 1.5649 1.0914 -4.8653 48 1 2.5604 -1.2383 -10.1861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071834199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -61.838727 kcal Electronic energy + Delta-G solvation = -26563.001729 eV Core-core repulsion = 22744.277718 eV Total energy + Delta-G solvation = -3818.724011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64713 -39.35933 -38.07421 -37.46790 -34.22085 -33.09910 -32.47224 -32.19553 -30.06113 -28.00063 -27.33352 -25.53070 -24.78521 -23.08228 -22.66201 -20.99682 -20.71404 -20.32979 -19.43116 -17.89325 -17.39871 -16.91396 -16.33851 -16.01496 -15.87338 -15.69886 -14.99508 -14.84600 -14.67668 -14.31480 -14.10481 -13.95947 -13.64099 -13.55732 -13.26010 -12.87879 -12.81314 -12.60601 -12.46107 -12.32492 -12.12198 -11.89273 -11.65846 -11.55264 -11.50648 -11.48031 -11.09873 -11.07400 -11.02016 -10.80344 -10.63354 -10.20716 -10.04583 -9.87485 -9.54091 -9.14673 -9.08493 -8.92047 -8.30520 -6.55726 -6.26119 -3.97297 2.39431 2.56829 2.92862 2.97580 3.20265 3.24279 3.26999 3.48455 3.59855 3.95279 4.16074 4.25403 4.28706 4.46499 4.53913 4.61512 4.63852 4.82349 4.87900 4.98436 4.99326 5.05724 5.09172 5.09715 5.16920 5.28962 5.34139 5.36337 5.43391 5.48157 5.50916 5.56240 5.61020 5.64977 5.67213 5.77424 5.79430 5.81494 5.83023 5.87081 6.00856 6.06320 6.06394 6.45781 7.19732 7.53676 7.55608 7.90192 8.30415 8.46253 9.19265 10.81180 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.002207 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.022672 B =12681.466919 C =14666.870174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.090 0.910 4 C 0.112 3.888 5 N -0.620 5.620 6 C 0.530 3.470 7 O -0.544 6.544 8 C -0.135 4.135 9 C -0.072 4.072 10 C -0.156 4.156 11 C -0.181 4.181 12 C -0.181 4.181 13 C 0.086 3.914 14 C 0.142 3.858 15 H 0.108 0.892 16 N -0.729 5.729 17 C 0.534 3.466 18 O -0.513 6.513 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.401 0.599 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 1.223 23.053 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.109 0.891 4 C -0.011 4.011 5 N -0.355 5.355 6 C 0.320 3.680 7 O -0.422 6.422 8 C -0.175 4.175 9 C -0.110 4.110 10 C -0.174 4.174 11 C -0.218 4.218 12 C -0.218 4.218 13 C -0.038 4.038 14 C 0.035 3.965 15 H 0.126 0.874 16 N -0.384 5.384 17 C 0.320 3.680 18 O -0.387 6.387 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.235 0.765 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.367 -0.927 23.356 23.778 hybrid contribution 0.339 2.706 -0.847 2.856 sum 4.706 1.779 22.508 23.064 Atomic orbital electron populations 1.21705 0.92817 1.02756 1.02657 1.22660 0.97165 0.99625 0.93617 0.89126 1.22278 0.82976 0.98468 0.97391 1.48547 1.12454 1.67403 1.07060 1.20455 0.84946 0.76495 0.86099 1.90701 1.83250 1.53630 1.14613 1.21665 0.92256 1.03484 1.00059 1.20914 0.91435 1.02320 0.96309 1.22362 0.95152 0.99577 1.00303 1.23071 1.04093 0.91056 1.03588 1.22974 0.97082 1.03230 0.98529 1.22645 0.99140 1.02817 0.79211 1.21911 0.94992 0.94790 0.84770 0.87424 1.45975 1.77119 1.10303 1.04975 1.20388 0.74912 0.89050 0.83601 1.90714 1.47058 1.15074 1.85804 1.23537 1.04921 1.03254 0.98771 1.85400 1.95814 1.10052 0.91945 1.22818 1.58464 0.94348 0.92887 0.90958 1.24995 0.94534 0.96163 0.97866 1.70005 1.46519 1.15973 1.17741 0.86224 0.78864 0.80764 0.79657 1.19928 1.20796 1.19926 0.91943 0.91967 0.91502 0.90001 0.90940 0.88543 0.88737 0.90870 0.91066 0.87575 0.88756 0.88803 0.88833 0.88785 0.90158 0.90566 0.76463 0.89139 0.89117 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.31 37.16 0.35 -0.62 16 2 C -0.11 -0.83 3.26 -88.48 -0.29 -1.12 16 3 H 0.09 0.61 8.01 -51.93 -0.42 0.19 16 4 C 0.11 0.97 6.38 -2.53 -0.02 0.96 16 5 N -0.62 -6.18 3.33 -170.28 -0.57 -6.75 16 6 C 0.53 5.94 7.85 -10.99 -0.09 5.86 16 7 O -0.54 -7.84 16.24 5.55 0.09 -7.75 16 8 C -0.13 -1.16 4.85 -27.88 -0.14 -1.29 16 9 C -0.07 -0.62 4.78 -26.73 -0.13 -0.75 16 10 C -0.16 -1.19 5.73 -90.62 -0.52 -1.71 16 11 C -0.18 -1.32 10.18 -26.69 -0.27 -1.60 16 12 C -0.18 -1.29 10.26 -26.69 -0.27 -1.57 16 13 C 0.09 0.84 6.26 -2.90 -0.02 0.82 16 14 C 0.14 1.41 2.74 -66.10 -0.18 1.23 16 15 H 0.11 1.26 7.52 -51.93 -0.39 0.87 16 16 N -0.73 -8.13 5.12 -52.03 -0.27 -8.39 16 17 C 0.53 8.82 7.85 -10.99 -0.09 8.74 16 18 O -0.51 -10.52 15.55 5.56 0.09 -10.43 16 19 C -0.15 -2.86 6.16 36.00 0.22 -2.64 16 20 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 21 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 22 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 25 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 33 H 0.07 0.62 7.99 -51.93 -0.41 0.20 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 38 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 45 H 0.40 3.38 8.54 -40.82 -0.35 3.03 16 46 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 47 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 411.26 15.07 6.20 6.20 Total: -1.00 -34.40 411.26 -10.46 -44.86 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.26 Total: 1.23 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.24 Total: -6.26 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.10 Total: -39.99 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.40 -10.46 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071834199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.980 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds