Wall clock time and date at job start Sat Apr 11 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.88587 * 2 1 4 4 C 1.54907 * 111.03767 * 123.90486 * 2 1 3 5 5 N 1.47423 * 104.83602 * 155.10220 * 4 2 1 6 6 C 1.34769 * 125.65233 * 155.91359 * 5 4 2 7 7 O 1.21287 * 119.99898 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00286 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47394 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46879 * 180.02562 * 9 8 6 11 11 C 1.53004 * 117.49745 * 243.74514 * 10 9 8 12 12 C 1.53005 * 117.49606 * 175.08482 * 10 9 8 13 13 C 1.47318 * 108.73116 * 335.71415 * 5 4 2 14 14 C 1.54321 * 107.12313 * 1.30410 * 13 5 4 15 15 H 1.09003 * 110.72096 * 263.52133 * 14 13 5 16 16 N 1.46499 * 110.72318 * 140.42823 * 14 13 5 17 17 C 1.34778 * 120.00278 * 88.83851 * 16 14 13 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99753 * 25 23 21 27 27 H 1.48497 * 109.46782 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00030 * 25 23 21 29 29 H 1.09003 * 109.47040 * 183.87715 * 1 2 3 30 30 H 1.08994 * 109.47477 * 303.87699 * 1 2 3 31 31 H 1.08998 * 109.47055 * 63.88490 * 1 2 3 32 32 H 1.09006 * 110.36663 * 273.93936 * 4 2 1 33 33 H 1.08999 * 110.36710 * 36.26105 * 4 2 1 34 34 H 1.08996 * 109.47198 * 300.00079 * 8 6 5 35 35 H 1.09010 * 109.46703 * 59.99667 * 8 6 5 36 36 H 1.09003 * 109.46841 * 299.99921 * 9 8 6 37 37 H 1.08999 * 109.46596 * 59.99844 * 9 8 6 38 38 H 1.08998 * 115.55179 * 29.41817 * 10 9 8 39 39 H 1.09004 * 117.49563 * 359.97438 * 11 10 9 40 40 H 1.08993 * 117.49947 * 145.02262 * 11 10 9 41 41 H 1.09000 * 117.50117 * 214.97617 * 12 10 9 42 42 H 1.09003 * 117.49935 * 359.97438 * 12 10 9 43 43 H 1.09007 * 110.06384 * 241.87255 * 13 5 4 44 44 H 1.09006 * 109.84911 * 120.61454 * 13 5 4 45 45 H 0.97000 * 119.99972 * 268.84206 * 16 14 13 46 46 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 47 47 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 48 48 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8065 1.2000 5 7 3.4280 -1.2421 0.7726 6 6 4.4489 -1.5603 1.5929 7 8 4.3024 -1.4989 2.7953 8 6 5.7725 -1.9924 1.0161 9 6 6.7509 -2.2925 2.1535 10 6 8.0948 -2.7305 1.5679 11 6 8.5644 -4.1558 1.8660 12 6 9.2480 -2.9664 2.5453 13 6 3.4676 -1.2769 -0.6997 14 6 2.0862 -0.8074 -1.2025 15 1 1.4455 -1.6612 -1.4232 16 7 2.2278 0.0503 -2.3817 17 6 2.2490 -0.4959 -3.6137 18 8 2.1503 -1.6973 -3.7461 19 6 2.3953 0.3864 -4.8266 20 16 2.3883 -0.6357 -6.3204 21 6 2.5674 0.6156 -7.5480 22 1 2.6431 1.6524 -7.2553 23 6 2.6175 0.2682 -8.8909 24 7 2.5258 -0.9956 -9.2476 25 14 2.8152 1.5940 -10.1919 26 1 4.0865 2.3264 -9.9631 27 1 2.8397 0.9669 -11.5378 28 1 1.6756 2.5426 -10.1090 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3634 0.5728 0.8531 31 1 -0.3633 0.4523 -0.9227 32 1 2.1567 -0.1719 2.0835 33 1 1.4532 -1.6706 1.4022 34 1 5.6305 -2.8887 0.4125 35 1 6.1748 -1.1941 0.3922 36 1 6.8928 -1.3957 2.7568 37 1 6.3487 -3.0904 2.7777 38 1 8.3402 -2.3136 0.5911 39 1 7.9161 -4.7813 2.4797 40 1 9.1191 -4.6765 1.0855 41 1 10.2522 -2.7053 2.2113 42 1 9.0494 -2.8092 3.6055 43 1 3.6622 -2.2925 -1.0446 44 1 4.2434 -0.6040 -1.0651 45 1 2.3065 1.0113 -2.2758 46 1 3.3351 0.9350 -4.7657 47 1 1.5649 1.0914 -4.8653 48 1 2.5604 -1.2383 -10.1861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071834199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:38 Heat of formation + Delta-G solvation = -83.349042 kcal Electronic energy + Delta-G solvation = -26563.934486 eV Core-core repulsion = 22744.277718 eV Total energy + Delta-G solvation = -3819.656768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54698 -40.49225 -38.93892 -38.23453 -35.29443 -34.55849 -33.92702 -32.90946 -31.30796 -29.09436 -28.02864 -27.61555 -25.49037 -23.97260 -23.22495 -21.84568 -21.49924 -21.31347 -20.25283 -19.76811 -18.28519 -17.91615 -17.51744 -17.00313 -16.85383 -16.70825 -16.40248 -16.24974 -15.94109 -15.31100 -15.04053 -14.79197 -14.63812 -14.49859 -14.46962 -14.19505 -13.77632 -13.52739 -13.43774 -13.17787 -13.14131 -13.00679 -12.85288 -12.62468 -12.49955 -12.35645 -12.28745 -12.17205 -12.15119 -11.78499 -11.67284 -11.28471 -11.10784 -10.97064 -10.90841 -10.77863 -10.24268 -10.19171 -9.77802 -8.62986 -8.32565 -6.09579 1.28086 1.45079 1.47450 1.52579 1.56686 1.60610 1.82769 2.27888 2.32747 2.89682 3.01734 3.18132 3.35540 3.46891 3.58216 3.77608 3.85087 3.97114 4.01373 4.03975 4.10616 4.20654 4.26536 4.34575 4.35552 4.43328 4.52507 4.56638 4.61836 4.68989 4.71323 4.77830 4.79423 4.81472 4.96964 5.00491 5.05048 5.07707 5.12376 5.17012 5.26657 5.36190 5.41123 5.44284 5.46560 6.21833 6.35662 6.49614 7.03944 7.09265 7.24569 8.76060 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.002207 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.022672 B =12681.466919 C =14666.870174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.109 0.891 4 C 0.108 3.892 5 N -0.617 5.617 6 C 0.526 3.474 7 O -0.581 6.581 8 C -0.130 4.130 9 C -0.066 4.066 10 C -0.160 4.160 11 C -0.184 4.184 12 C -0.181 4.181 13 C 0.091 3.909 14 C 0.140 3.860 15 H 0.090 0.910 16 N -0.701 5.701 17 C 0.540 3.460 18 O -0.558 6.558 19 C -0.131 4.131 20 S -0.149 6.149 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.995 3.005 26 H -0.262 1.262 27 H -0.281 1.281 28 H -0.263 1.263 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.419 0.581 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 3.633 23.482 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.127 0.873 4 C -0.015 4.015 5 N -0.351 5.351 6 C 0.317 3.683 7 O -0.461 6.461 8 C -0.170 4.170 9 C -0.104 4.104 10 C -0.178 4.178 11 C -0.221 4.221 12 C -0.218 4.218 13 C -0.034 4.034 14 C 0.034 3.966 15 H 0.108 0.892 16 N -0.355 5.355 17 C 0.326 3.674 18 O -0.436 6.436 19 C -0.282 4.282 20 S 0.078 5.922 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.187 1.187 27 H -0.206 1.206 28 H -0.187 1.187 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.257 0.743 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.763 1.529 23.817 24.337 hybrid contribution 0.183 1.954 -0.828 2.130 sum 4.946 3.483 22.989 23.772 Atomic orbital electron populations 1.21709 0.92072 1.02825 1.03205 1.22597 0.97594 0.99810 0.91249 0.87280 1.22389 0.82461 0.98737 0.97907 1.48581 1.12731 1.66737 1.07058 1.20892 0.85814 0.75912 0.85704 1.90683 1.83959 1.55356 1.16148 1.21687 0.90914 1.04276 1.00078 1.20819 0.92063 1.01396 0.96138 1.22356 0.94733 0.99949 1.00755 1.23130 1.04168 0.91011 1.03828 1.23049 0.97375 1.02873 0.98466 1.22568 0.99140 1.02668 0.78988 1.21960 0.95194 0.94644 0.84805 0.89152 1.45627 1.74960 1.11384 1.03540 1.20030 0.74817 0.88010 0.84536 1.90713 1.49547 1.16822 1.86491 1.23379 1.06859 1.02318 0.95650 1.85568 1.96130 1.13841 0.96682 1.23176 1.57974 0.94752 0.93444 0.89868 1.26096 0.93991 0.98580 1.00483 1.70174 1.47926 1.18430 1.18203 0.85046 0.79449 0.77583 0.76199 1.18666 1.20624 1.18713 0.92392 0.90347 0.91808 0.89957 0.90917 0.87762 0.87087 0.91813 0.92423 0.86805 0.88991 0.88112 0.87849 0.88863 0.90990 0.89495 0.74280 0.87018 0.87147 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.31 71.98 0.67 -0.93 16 2 C -0.09 -1.16 3.26 -9.40 -0.03 -1.19 16 3 H 0.11 1.04 8.01 -2.38 -0.02 1.02 16 4 C 0.11 1.71 6.38 86.85 0.55 2.26 16 5 N -0.62 -11.50 3.33 -811.03 -2.70 -14.20 16 6 C 0.53 11.40 7.85 87.66 0.69 12.09 16 7 O -0.58 -16.70 16.24 -3.05 -0.05 -16.74 16 8 C -0.13 -2.10 4.85 29.85 0.14 -1.95 16 9 C -0.07 -1.13 4.78 30.60 0.15 -0.98 16 10 C -0.16 -2.29 5.73 -10.79 -0.06 -2.35 16 11 C -0.18 -2.55 10.18 30.62 0.31 -2.24 16 12 C -0.18 -2.40 10.26 30.62 0.31 -2.09 16 13 C 0.09 1.62 6.26 86.67 0.54 2.16 16 14 C 0.14 2.54 2.74 46.18 0.13 2.67 16 15 H 0.09 2.06 7.52 -2.39 -0.02 2.04 16 16 N -0.70 -13.87 5.12 -436.93 -2.24 -16.11 16 17 C 0.54 17.13 7.85 87.66 0.69 17.82 16 18 O -0.56 -23.02 15.55 -3.02 -0.05 -23.07 16 19 C -0.13 -4.64 6.16 71.23 0.44 -4.21 16 20 S -0.15 -7.86 20.57 -56.49 -1.16 -9.02 16 21 C -0.55 -29.96 9.50 67.96 0.65 -29.32 16 22 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 23 C 0.01 0.74 5.49 84.86 0.47 1.20 16 24 N -0.91 -54.69 13.22 21.65 0.29 -54.41 16 25 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 29 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.35 8.04 -2.38 -0.02 1.33 16 33 H 0.07 1.16 7.99 -2.39 -0.02 1.14 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 37 H 0.06 1.12 7.83 -2.39 -0.02 1.10 16 38 H 0.11 1.46 8.08 -2.39 -0.02 1.44 16 39 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.09 1.40 8.03 -2.38 -0.02 1.38 16 45 H 0.42 5.48 8.54 -92.71 -0.79 4.69 16 46 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 47 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 48 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -76.69 411.26 1.91 -74.78 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.15 Total: 21.44 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.64 Total: -7.05 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -4.65 Total: -84.72 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.10 Total: -39.81 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -76.69 1.91 -74.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071834199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.572 kcal (2) G-P(sol) polarization free energy of solvation -76.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds