Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.77766 * 2 1 4 4 C 1.54316 * 110.72076 * 236.76180 * 2 1 3 5 5 N 1.47023 * 107.27490 * 219.44076 * 4 2 1 6 6 C 1.34768 * 125.65460 * 178.98470 * 5 4 2 7 7 O 1.21282 * 119.99863 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00416 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47300 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47168 * 180.02562 * 9 8 6 11 11 C 1.53002 * 117.49735 * 243.74436 * 10 9 8 12 12 C 1.52998 * 117.50175 * 175.08492 * 10 9 8 13 13 C 1.47433 * 108.69869 * 358.94415 * 5 4 2 14 14 C 1.54910 * 104.83102 * 24.12560 * 13 5 4 15 15 H 1.08997 * 111.03758 * 81.07988 * 14 13 5 16 16 N 1.46506 * 111.00124 * 204.91900 * 14 13 5 17 17 C 1.34779 * 119.99461 * 267.19546 * 16 14 13 18 18 O 1.21275 * 120.00183 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99413 * 180.02562 * 17 16 14 20 20 S 1.81008 * 109.46814 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99679 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00119 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99689 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00200 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00035 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46687 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47448 * 119.99575 * 25 23 21 28 28 H 1.48498 * 109.46823 * 239.99761 * 25 23 21 29 29 H 1.09000 * 109.47491 * 296.76041 * 1 2 3 30 30 H 1.09003 * 109.47292 * 56.76128 * 1 2 3 31 31 H 1.08998 * 109.47175 * 176.76183 * 1 2 3 32 32 H 1.08999 * 109.88620 * 338.86242 * 4 2 1 33 33 H 1.09006 * 109.88429 * 99.86908 * 4 2 1 34 34 H 1.09006 * 109.46775 * 299.99839 * 8 6 5 35 35 H 1.09003 * 109.47002 * 59.99796 * 8 6 5 36 36 H 1.09005 * 109.46631 * 299.99994 * 9 8 6 37 37 H 1.08997 * 109.47445 * 59.99350 * 9 8 6 38 38 H 1.09004 * 115.55209 * 29.40939 * 10 9 8 39 39 H 1.08997 * 117.50025 * 0.02562 * 11 10 9 40 40 H 1.09005 * 117.49971 * 145.01764 * 11 10 9 41 41 H 1.08994 * 117.50287 * 214.97713 * 12 10 9 42 42 H 1.09007 * 117.49705 * 359.97330 * 12 10 9 43 43 H 1.09006 * 110.36319 * 265.28904 * 13 5 4 44 44 H 1.08995 * 110.36350 * 142.96557 * 13 5 4 45 45 H 0.96995 * 119.99814 * 87.19494 * 16 14 13 46 46 H 1.08994 * 109.46865 * 299.99905 * 19 17 16 47 47 H 1.08994 * 109.47394 * 60.00070 * 19 17 16 48 48 H 0.97005 * 120.00307 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0760 -0.7911 -1.2072 5 7 3.2445 -1.5507 -0.7390 6 6 3.9924 -2.3833 -1.4897 7 8 3.7200 -2.5554 -2.6590 8 6 5.1673 -3.1007 -0.8764 9 6 5.8404 -3.9756 -1.9358 10 6 7.0327 -4.7044 -1.3130 11 6 8.4243 -4.3760 -1.8577 12 6 7.7722 -5.7220 -2.1839 13 6 3.4633 -1.2497 0.6876 14 6 2.0789 -0.7954 1.2138 15 1 1.4448 -1.6532 1.4378 16 7 2.2214 0.0697 2.3875 17 6 2.1872 -0.4628 3.6252 18 8 2.0390 -1.6581 3.7672 19 6 2.3332 0.4272 4.8326 20 16 2.2470 -0.5769 6.3361 21 6 2.4407 0.6804 7.5552 22 1 2.5639 1.7102 7.2539 23 6 2.4361 0.3472 8.9026 24 7 2.2866 -0.9079 9.2697 25 14 2.6408 1.6803 10.1951 26 1 2.7896 2.9984 9.5274 27 1 1.4456 1.7033 11.0761 28 1 3.8505 1.3989 11.0091 29 1 -0.3634 0.4627 0.9176 30 1 -0.3634 0.5633 -0.8595 31 1 -0.3633 -1.0260 -0.0580 32 1 1.3130 -1.4758 -1.5776 33 1 2.3715 -0.1024 -1.9988 34 1 5.8836 -2.3698 -0.5009 35 1 4.8217 -3.7266 -0.0537 36 1 5.1243 -4.7065 -2.3118 37 1 6.1859 -3.3494 -2.7583 38 1 6.9473 -4.9211 -0.2482 39 1 8.4903 -3.6406 -2.6594 40 1 9.2545 -4.3772 -1.1512 41 1 8.1736 -6.6079 -1.6921 42 1 7.4089 -5.8726 -3.2006 43 1 4.1931 -0.4477 0.7985 44 1 3.7960 -2.1425 1.2168 45 1 2.3403 1.0256 2.2738 46 1 3.2947 0.9389 4.7925 47 1 1.5297 1.1636 4.8405 48 1 2.2830 -1.1408 10.2114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071834200.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = -62.146574 kcal Electronic energy + Delta-G solvation = -26556.872580 eV Core-core repulsion = 22738.135220 eV Total energy + Delta-G solvation = -3818.737360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65380 -39.35252 -38.08480 -37.47290 -34.23364 -33.10517 -32.47668 -32.19258 -30.05979 -28.00633 -27.32617 -25.53636 -24.78001 -23.08844 -22.65898 -20.96163 -20.69909 -20.36261 -19.48076 -17.90384 -17.35442 -16.94504 -16.35851 -16.08642 -15.87278 -15.46571 -15.00371 -14.85020 -14.62011 -14.39816 -14.12641 -13.91645 -13.77630 -13.48711 -13.26347 -13.08921 -12.67003 -12.55232 -12.49705 -12.36605 -12.10848 -11.88640 -11.64906 -11.51389 -11.49402 -11.47363 -11.10927 -11.07478 -10.99777 -10.79340 -10.62742 -10.19904 -10.04350 -9.85823 -9.54601 -9.18199 -9.11138 -8.87854 -8.29807 -6.55953 -6.26720 -3.97683 2.39830 2.55440 2.92354 2.98488 3.18161 3.24569 3.28616 3.49232 3.59439 4.00392 4.15465 4.23283 4.31337 4.47418 4.50502 4.62531 4.64605 4.82363 4.89636 4.94983 4.99559 5.06012 5.07819 5.08863 5.19386 5.29723 5.34533 5.36880 5.41260 5.48425 5.51534 5.57820 5.61423 5.64938 5.67573 5.78363 5.79791 5.81456 5.83813 5.94913 5.95839 6.06251 6.07391 6.45793 7.19766 7.53718 7.55786 7.90852 8.30477 8.46130 9.18996 10.80684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.002175 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.217113 B =12872.275386 C =14812.423086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.091 0.909 4 C 0.113 3.887 5 N -0.619 5.619 6 C 0.531 3.469 7 O -0.543 6.543 8 C -0.135 4.135 9 C -0.072 4.072 10 C -0.156 4.156 11 C -0.182 4.182 12 C -0.181 4.181 13 C 0.085 3.915 14 C 0.140 3.860 15 H 0.109 0.891 16 N -0.728 5.728 17 C 0.534 3.466 18 O -0.513 6.513 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.401 0.599 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 0.155 -22.944 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.109 0.891 4 C -0.009 4.009 5 N -0.354 5.354 6 C 0.320 3.680 7 O -0.421 6.421 8 C -0.175 4.175 9 C -0.110 4.110 10 C -0.174 4.174 11 C -0.219 4.219 12 C -0.218 4.218 13 C -0.039 4.039 14 C 0.033 3.967 15 H 0.127 0.873 16 N -0.382 5.382 17 C 0.321 3.679 18 O -0.386 6.386 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.236 0.764 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.569 -2.130 -23.222 23.763 hybrid contribution 0.429 2.779 0.790 2.921 sum 4.999 0.650 -22.433 22.992 Atomic orbital electron populations 1.21760 0.92905 1.02730 1.02608 1.22526 0.97340 0.99627 0.93509 0.89074 1.21987 0.87895 0.94702 0.96360 1.48426 1.30472 1.45047 1.11407 1.20465 0.83422 0.78195 0.85898 1.90700 1.71104 1.63810 1.16448 1.21671 0.95552 0.99984 1.00277 1.20912 0.95435 0.97881 0.96755 1.22367 0.92800 1.02863 0.99347 1.23064 0.96033 0.99168 1.03611 1.22970 1.04440 0.93374 1.00983 1.22828 0.98528 1.02054 0.80513 1.22045 0.95286 0.94710 0.84644 0.87298 1.45888 1.76704 1.10814 1.04809 1.20390 0.74966 0.89010 0.83544 1.90714 1.46681 1.15534 1.85716 1.23535 1.04963 1.03116 0.98837 1.85413 1.95317 1.10930 0.91649 1.22897 1.57860 0.94904 0.92717 0.90845 1.24999 0.94551 0.96195 0.97864 1.70021 1.46461 1.16564 1.17179 0.86115 0.77999 0.80831 0.80540 1.19611 1.20552 1.20550 0.91514 0.92007 0.92002 0.90891 0.91139 0.88684 0.88486 0.90792 0.91123 0.87503 0.88813 0.88848 0.88798 0.88778 0.90666 0.89514 0.76446 0.89101 0.89104 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.16 37.16 0.34 -0.68 16 2 C -0.11 -0.83 3.19 -88.79 -0.28 -1.11 16 3 H 0.09 0.56 8.00 -51.93 -0.42 0.14 16 4 C 0.11 1.00 6.46 -3.07 -0.02 0.98 16 5 N -0.62 -6.22 3.33 -170.52 -0.57 -6.79 16 6 C 0.53 6.03 7.85 -10.99 -0.09 5.94 16 7 O -0.54 -7.93 16.31 5.56 0.09 -7.84 16 8 C -0.14 -1.18 4.66 -27.88 -0.13 -1.31 16 9 C -0.07 -0.64 4.78 -26.74 -0.13 -0.76 16 10 C -0.16 -1.21 5.73 -90.62 -0.52 -1.73 16 11 C -0.18 -1.31 10.18 -26.69 -0.27 -1.58 16 12 C -0.18 -1.31 10.25 -26.69 -0.27 -1.59 16 13 C 0.09 0.81 6.39 -2.52 -0.02 0.79 16 14 C 0.14 1.40 2.87 -65.78 -0.19 1.22 16 15 H 0.11 1.34 7.44 -51.93 -0.39 0.95 16 16 N -0.73 -8.04 5.20 -51.73 -0.27 -8.31 16 17 C 0.53 8.82 7.85 -10.98 -0.09 8.73 16 18 O -0.51 -10.56 15.50 5.56 0.09 -10.47 16 19 C -0.15 -2.84 6.16 36.01 0.22 -2.62 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -14.76 9.50 30.94 0.29 -14.47 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 24 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 25 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.07 0.68 7.76 -51.93 -0.40 0.28 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.78 7.85 -51.93 -0.41 0.37 16 36 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 38 H 0.11 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.09 0.65 8.03 -51.93 -0.42 0.24 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.89 7.48 -51.93 -0.39 0.50 16 45 H 0.40 3.27 8.57 -40.82 -0.35 2.92 16 46 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 47 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 410.28 15.07 6.18 6.18 Total: -1.00 -34.57 410.28 -10.43 -45.00 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.21 Total: 1.18 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.24 Total: -6.24 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.10 Total: -39.93 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.18 Total: -18.31 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.57 -10.43 -45.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071834200.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.148 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds