Wall clock time and date at job start Sat Apr 11 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.77766 * 2 1 4 4 C 1.54316 * 110.72076 * 236.76180 * 2 1 3 5 5 N 1.47023 * 107.27490 * 219.44076 * 4 2 1 6 6 C 1.34768 * 125.65460 * 178.98470 * 5 4 2 7 7 O 1.21282 * 119.99863 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00416 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47300 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47168 * 180.02562 * 9 8 6 11 11 C 1.53002 * 117.49735 * 243.74436 * 10 9 8 12 12 C 1.52998 * 117.50175 * 175.08492 * 10 9 8 13 13 C 1.47433 * 108.69869 * 358.94415 * 5 4 2 14 14 C 1.54910 * 104.83102 * 24.12560 * 13 5 4 15 15 H 1.08997 * 111.03758 * 81.07988 * 14 13 5 16 16 N 1.46506 * 111.00124 * 204.91900 * 14 13 5 17 17 C 1.34779 * 119.99461 * 267.19546 * 16 14 13 18 18 O 1.21275 * 120.00183 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99413 * 180.02562 * 17 16 14 20 20 S 1.81008 * 109.46814 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99679 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00119 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99689 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00200 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00035 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46687 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47448 * 119.99575 * 25 23 21 28 28 H 1.48498 * 109.46823 * 239.99761 * 25 23 21 29 29 H 1.09000 * 109.47491 * 296.76041 * 1 2 3 30 30 H 1.09003 * 109.47292 * 56.76128 * 1 2 3 31 31 H 1.08998 * 109.47175 * 176.76183 * 1 2 3 32 32 H 1.08999 * 109.88620 * 338.86242 * 4 2 1 33 33 H 1.09006 * 109.88429 * 99.86908 * 4 2 1 34 34 H 1.09006 * 109.46775 * 299.99839 * 8 6 5 35 35 H 1.09003 * 109.47002 * 59.99796 * 8 6 5 36 36 H 1.09005 * 109.46631 * 299.99994 * 9 8 6 37 37 H 1.08997 * 109.47445 * 59.99350 * 9 8 6 38 38 H 1.09004 * 115.55209 * 29.40939 * 10 9 8 39 39 H 1.08997 * 117.50025 * 0.02562 * 11 10 9 40 40 H 1.09005 * 117.49971 * 145.01764 * 11 10 9 41 41 H 1.08994 * 117.50287 * 214.97713 * 12 10 9 42 42 H 1.09007 * 117.49705 * 359.97330 * 12 10 9 43 43 H 1.09006 * 110.36319 * 265.28904 * 13 5 4 44 44 H 1.08995 * 110.36350 * 142.96557 * 13 5 4 45 45 H 0.96995 * 119.99814 * 87.19494 * 16 14 13 46 46 H 1.08994 * 109.46865 * 299.99905 * 19 17 16 47 47 H 1.08994 * 109.47394 * 60.00070 * 19 17 16 48 48 H 0.97005 * 120.00307 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0760 -0.7911 -1.2072 5 7 3.2445 -1.5507 -0.7390 6 6 3.9924 -2.3833 -1.4897 7 8 3.7200 -2.5554 -2.6590 8 6 5.1673 -3.1007 -0.8764 9 6 5.8404 -3.9756 -1.9358 10 6 7.0327 -4.7044 -1.3130 11 6 8.4243 -4.3760 -1.8577 12 6 7.7722 -5.7220 -2.1839 13 6 3.4633 -1.2497 0.6876 14 6 2.0789 -0.7954 1.2138 15 1 1.4448 -1.6532 1.4378 16 7 2.2214 0.0697 2.3875 17 6 2.1872 -0.4628 3.6252 18 8 2.0390 -1.6581 3.7672 19 6 2.3332 0.4272 4.8326 20 16 2.2470 -0.5769 6.3361 21 6 2.4407 0.6804 7.5552 22 1 2.5639 1.7102 7.2539 23 6 2.4361 0.3472 8.9026 24 7 2.2866 -0.9079 9.2697 25 14 2.6408 1.6803 10.1951 26 1 2.7896 2.9984 9.5274 27 1 1.4456 1.7033 11.0761 28 1 3.8505 1.3989 11.0091 29 1 -0.3634 0.4627 0.9176 30 1 -0.3634 0.5633 -0.8595 31 1 -0.3633 -1.0260 -0.0580 32 1 1.3130 -1.4758 -1.5776 33 1 2.3715 -0.1024 -1.9988 34 1 5.8836 -2.3698 -0.5009 35 1 4.8217 -3.7266 -0.0537 36 1 5.1243 -4.7065 -2.3118 37 1 6.1859 -3.3494 -2.7583 38 1 6.9473 -4.9211 -0.2482 39 1 8.4903 -3.6406 -2.6594 40 1 9.2545 -4.3772 -1.1512 41 1 8.1736 -6.6079 -1.6921 42 1 7.4089 -5.8726 -3.2006 43 1 4.1931 -0.4477 0.7985 44 1 3.7960 -2.1425 1.2168 45 1 2.3403 1.0256 2.2738 46 1 3.2947 0.9389 4.7925 47 1 1.5297 1.1636 4.8405 48 1 2.2830 -1.1408 10.2114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071834200.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:42 Heat of formation + Delta-G solvation = -83.996725 kcal Electronic energy + Delta-G solvation = -26557.820074 eV Core-core repulsion = 22738.135220 eV Total energy + Delta-G solvation = -3819.684854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55117 -40.49337 -38.95809 -38.24007 -35.31008 -34.56106 -33.93929 -32.91715 -31.30520 -29.09313 -28.03405 -27.62093 -25.49241 -23.98181 -23.22487 -21.83219 -21.50934 -21.31025 -20.30563 -19.77724 -18.24557 -17.98345 -17.50296 -16.91516 -16.86365 -16.83002 -16.36862 -16.12657 -15.94483 -15.20812 -15.07838 -14.87871 -14.64072 -14.60386 -14.41574 -14.19022 -13.93441 -13.52960 -13.34023 -13.23818 -13.13277 -13.01064 -12.90521 -12.58882 -12.49054 -12.32839 -12.28681 -12.16549 -12.15637 -11.75579 -11.64581 -11.28961 -11.14068 -10.97960 -10.91134 -10.77996 -10.23282 -10.20724 -9.74929 -8.63053 -8.32978 -6.09782 1.28046 1.42623 1.47069 1.52047 1.58388 1.61267 1.81967 2.27892 2.33525 2.89869 3.01615 3.21446 3.36492 3.45719 3.59367 3.77329 3.81492 3.96520 4.01478 4.04187 4.14480 4.19060 4.24898 4.33831 4.36356 4.42144 4.53031 4.57218 4.61376 4.68849 4.70549 4.76994 4.79531 4.85130 4.96487 5.00871 5.05129 5.06051 5.10548 5.18389 5.26984 5.33548 5.40752 5.44877 5.47586 6.22236 6.35320 6.50886 7.03649 7.09197 7.25434 8.76163 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.002175 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.217113 B =12872.275386 C =14812.423086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.118 0.882 4 C 0.110 3.890 5 N -0.617 5.617 6 C 0.525 3.475 7 O -0.581 6.581 8 C -0.130 4.130 9 C -0.066 4.066 10 C -0.162 4.162 11 C -0.179 4.179 12 C -0.184 4.184 13 C 0.089 3.911 14 C 0.137 3.863 15 H 0.084 0.916 16 N -0.698 5.698 17 C 0.540 3.460 18 O -0.560 6.560 19 C -0.130 4.130 20 S -0.152 6.152 21 C -0.543 4.543 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.275 1.275 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.421 0.579 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 2.850 -23.469 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.136 0.864 4 C -0.013 4.013 5 N -0.351 5.351 6 C 0.316 3.684 7 O -0.462 6.462 8 C -0.169 4.169 9 C -0.104 4.104 10 C -0.180 4.180 11 C -0.216 4.216 12 C -0.220 4.220 13 C -0.035 4.035 14 C 0.031 3.969 15 H 0.102 0.898 16 N -0.352 5.352 17 C 0.326 3.674 18 O -0.437 6.437 19 C -0.281 4.281 20 S 0.076 5.924 21 C -0.691 4.691 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.818 3.182 26 H -0.179 1.179 27 H -0.202 1.202 28 H -0.201 1.201 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.259 0.741 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.327 0.621 -23.780 24.377 hybrid contribution 0.163 1.942 0.805 2.109 sum 5.489 2.563 -22.975 23.760 Atomic orbital electron populations 1.21764 0.92569 1.02387 1.03234 1.22481 0.97463 1.00232 0.91003 0.86362 1.22100 0.87354 0.94703 0.97151 1.48470 1.30474 1.44635 1.11515 1.20909 0.83909 0.78064 0.85521 1.90680 1.72269 1.65110 1.18097 1.21687 0.94910 1.00198 1.00138 1.20814 0.95525 0.97455 0.96618 1.22345 0.92706 1.03370 0.99576 1.23127 0.95759 0.99026 1.03670 1.23048 1.04287 0.93772 1.00942 1.22807 0.98374 1.02382 0.79929 1.22064 0.95666 0.94381 0.84821 0.89766 1.45511 1.74543 1.11920 1.03261 1.20047 0.74858 0.87947 0.84553 1.90713 1.49233 1.17365 1.86435 1.23375 1.06948 1.02239 0.95560 1.85593 1.95667 1.14673 0.96512 1.23238 1.57360 0.95240 0.93257 0.89813 1.26101 0.94033 0.98643 1.00450 1.70183 1.47862 1.19037 1.17716 0.84937 0.77939 0.78028 0.77251 1.17928 1.20164 1.20089 0.91817 0.90238 0.93099 0.91760 0.90328 0.86995 0.87805 0.92280 0.91995 0.87055 0.88706 0.87992 0.88003 0.88891 0.88667 0.90375 0.74095 0.86878 0.87095 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.16 71.98 0.66 -1.08 16 2 C -0.09 -1.14 3.19 -9.61 -0.03 -1.17 16 3 H 0.12 0.90 8.00 -2.38 -0.02 0.88 16 4 C 0.11 1.75 6.46 86.73 0.56 2.31 16 5 N -0.62 -11.64 3.33 -811.79 -2.70 -14.34 16 6 C 0.53 11.69 7.85 87.66 0.69 12.38 16 7 O -0.58 -17.11 16.31 -3.04 -0.05 -17.16 16 8 C -0.13 -2.17 4.66 29.85 0.14 -2.03 16 9 C -0.07 -1.16 4.78 30.59 0.15 -1.02 16 10 C -0.16 -2.41 5.73 -10.80 -0.06 -2.47 16 11 C -0.18 -2.39 10.18 30.62 0.31 -2.07 16 12 C -0.18 -2.54 10.25 30.62 0.31 -2.23 16 13 C 0.09 1.53 6.39 86.85 0.55 2.08 16 14 C 0.14 2.51 2.87 46.38 0.13 2.64 16 15 H 0.08 2.05 7.44 -2.39 -0.02 2.04 16 16 N -0.70 -13.58 5.20 -435.95 -2.27 -15.85 16 17 C 0.54 17.12 7.85 87.66 0.69 17.81 16 18 O -0.56 -23.28 15.50 -3.01 -0.05 -23.32 16 19 C -0.13 -4.59 6.16 71.24 0.44 -4.15 16 20 S -0.15 -7.98 20.57 -56.49 -1.16 -9.14 16 21 C -0.54 -29.78 9.50 67.96 0.65 -29.14 16 22 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 23 C 0.01 0.69 5.49 84.86 0.47 1.15 16 24 N -0.91 -54.73 13.22 21.65 0.29 -54.44 16 25 Si 1.00 42.39 29.55 68.60 2.03 44.41 16 26 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 27 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.74 8.06 -2.39 -0.02 0.72 16 32 H 0.06 1.16 7.76 -2.39 -0.02 1.14 16 33 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.10 1.60 7.85 -2.39 -0.02 1.59 16 36 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 37 H 0.06 1.18 7.83 -2.39 -0.02 1.16 16 38 H 0.11 1.56 8.08 -2.38 -0.02 1.54 16 39 H 0.09 1.24 8.03 -2.39 -0.02 1.22 16 40 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.08 1.52 7.48 -2.39 -0.02 1.50 16 45 H 0.42 5.11 8.57 -92.71 -0.79 4.32 16 46 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 47 H 0.11 3.49 8.14 -2.40 -0.02 3.47 16 48 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -77.74 410.28 1.89 -75.85 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.15 Total: 20.96 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.65 Total: -6.97 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -4.68 Total: -84.63 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.10 Total: -40.48 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -77.74 1.89 -75.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071834200.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.146 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds