Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.89007 * 2 1 4 4 C 1.55136 * 110.93678 * 124.07341 * 2 1 3 5 5 N 1.47422 * 104.72246 * 155.28388 * 4 2 1 6 6 C 1.34773 * 125.64458 * 155.81445 * 5 4 2 7 7 O 1.21283 * 120.00360 * 359.44801 * 6 5 4 8 8 C 1.50706 * 120.00081 * 179.72077 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.72561 * 8 6 5 10 10 C 1.52996 * 109.46929 * 179.97438 * 9 8 6 11 11 C 1.53004 * 117.49800 * 243.62193 * 10 9 8 12 12 C 1.52998 * 60.00090 * 252.51538 * 11 10 9 13 13 C 1.47014 * 108.70374 * 335.55682 * 5 4 2 14 14 C 1.54322 * 107.27676 * 1.28395 * 13 5 4 15 15 H 1.08995 * 110.72455 * 140.55753 * 14 13 5 16 16 N 1.46496 * 110.71947 * 263.65739 * 14 13 5 17 17 C 1.34780 * 119.99801 * 273.53784 * 16 14 13 18 18 O 1.21280 * 119.99956 * 0.02562 * 17 16 14 19 19 C 1.50704 * 120.00174 * 179.97438 * 17 16 14 20 20 S 1.80992 * 109.47180 * 180.02562 * 19 17 16 21 21 C 1.76203 * 99.99860 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00132 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99679 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99774 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00268 * 359.97438 * 23 21 20 26 26 H 1.48510 * 109.46829 * 89.99785 * 25 23 21 27 27 H 1.48498 * 109.47188 * 209.99672 * 25 23 21 28 28 H 1.48498 * 109.47115 * 330.00376 * 25 23 21 29 29 H 1.08991 * 109.47817 * 183.88022 * 1 2 3 30 30 H 1.08996 * 109.46984 * 303.89077 * 1 2 3 31 31 H 1.09005 * 109.46540 * 63.88243 * 1 2 3 32 32 H 1.09003 * 110.49305 * 36.44624 * 4 2 1 33 33 H 1.08994 * 110.34307 * 274.05345 * 4 2 1 34 34 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 35 35 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 36 36 H 1.09000 * 109.46986 * 300.00089 * 9 8 6 37 37 H 1.09002 * 109.46857 * 60.00224 * 9 8 6 38 38 H 1.08996 * 115.55532 * 29.33113 * 10 9 8 39 39 H 1.09000 * 117.49771 * 0.02562 * 11 10 9 40 40 H 1.09001 * 117.49983 * 145.02642 * 11 10 9 41 41 H 1.09004 * 117.49334 * 252.51492 * 12 11 10 42 42 H 1.09000 * 117.50086 * 107.49108 * 12 11 10 43 43 H 1.09004 * 109.88637 * 120.70541 * 13 5 4 44 44 H 1.09002 * 109.88312 * 241.86672 * 13 5 4 45 45 H 0.97001 * 120.00354 * 93.54489 * 16 14 13 46 46 H 1.09000 * 109.47045 * 300.00794 * 19 17 16 47 47 H 1.09001 * 109.46518 * 60.00324 * 19 17 16 48 48 H 0.96997 * 120.00412 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0844 -0.8118 1.2002 5 7 3.4279 -1.2423 0.7726 6 6 4.4488 -1.5604 1.5930 7 8 4.3039 -1.4942 2.7953 8 6 5.7724 -1.9925 1.0163 9 6 6.7527 -2.2864 2.1536 10 6 8.0962 -2.7257 1.5680 11 6 8.5691 -4.1482 1.8743 12 6 9.2516 -2.9542 2.5447 13 6 3.4678 -1.2732 -0.6966 14 6 2.0862 -0.8076 -1.2025 15 1 2.1916 -0.1696 -2.0799 16 7 1.2287 -1.9575 -1.5002 17 6 1.2842 -2.5434 -2.7127 18 8 2.0442 -2.1190 -3.5571 19 6 0.4025 -3.7267 -3.0189 20 16 0.7076 -4.2839 -4.7137 21 6 -0.4215 -5.6339 -4.7998 22 1 -1.0330 -5.8818 -3.9448 23 6 -0.5251 -6.3786 -5.9665 24 7 -1.3682 -7.3874 -6.0307 25 14 0.5320 -5.9493 -7.4456 26 1 1.8113 -6.7001 -7.3743 27 1 -0.1880 -6.3154 -8.6917 28 1 0.8132 -4.4912 -7.4465 29 1 -0.3634 -1.0252 0.0695 30 1 -0.3633 0.5730 0.8530 31 1 -0.3632 0.4524 -0.9228 32 1 1.4536 -1.6783 1.3987 33 1 2.1523 -0.1801 2.0858 34 1 5.6312 -2.8917 0.4167 35 1 6.1724 -1.1963 0.3884 36 1 6.8938 -1.3872 2.7532 37 1 6.3527 -3.0827 2.7814 38 1 8.3392 -2.3142 0.5884 39 1 7.9229 -4.7712 2.4926 40 1 9.1233 -4.6729 1.0960 41 1 10.2548 -2.6934 2.2073 42 1 9.0546 -2.7916 3.6043 43 1 4.2426 -0.5985 -1.0608 44 1 3.6657 -2.2884 -1.0408 45 1 0.6210 -2.2972 -0.8247 46 1 0.6271 -4.5364 -2.3245 47 1 -0.6431 -3.4375 -2.9137 48 1 -1.4404 -7.9081 -6.8459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071834201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = -58.229017 kcal Electronic energy + Delta-G solvation = -26883.482364 eV Core-core repulsion = 23064.914883 eV Total energy + Delta-G solvation = -3818.567482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80162 -39.43429 -38.09369 -37.50545 -34.25642 -32.94621 -32.47678 -32.16720 -30.20405 -28.27255 -27.36845 -25.65413 -24.84912 -23.17494 -22.66586 -21.18132 -20.72095 -20.26663 -19.36377 -18.02098 -17.31239 -16.95184 -16.43400 -16.13188 -15.87768 -15.57440 -15.10424 -14.99994 -14.96148 -14.29230 -14.13140 -13.99757 -13.78518 -13.48737 -13.17219 -12.93106 -12.82878 -12.78136 -12.56271 -12.44807 -12.13271 -11.91244 -11.74871 -11.64463 -11.51357 -11.37104 -11.30336 -11.08151 -11.04546 -10.65604 -10.63649 -10.21389 -10.05737 -9.90221 -9.65530 -9.21766 -9.03913 -8.92592 -8.55892 -6.96874 -6.32564 -4.04967 2.38841 2.61823 2.69939 2.82573 3.22102 3.29971 3.46394 3.47645 3.58050 3.86826 4.19181 4.26154 4.29139 4.44792 4.45740 4.60635 4.62779 4.66746 4.83083 4.85653 4.97355 5.00461 5.04213 5.06498 5.14020 5.16598 5.24301 5.33002 5.33867 5.35886 5.44800 5.47892 5.60234 5.64107 5.64501 5.68165 5.70952 5.77002 5.82344 5.85294 5.94750 5.95366 6.05028 6.40108 7.19275 7.45626 7.89645 7.90359 8.35034 8.38090 9.13326 10.76651 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.002492 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.768264 B =11235.090928 C =13197.343064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.099 0.901 4 C 0.107 3.893 5 N -0.619 5.619 6 C 0.530 3.470 7 O -0.544 6.544 8 C -0.134 4.134 9 C -0.072 4.072 10 C -0.156 4.156 11 C -0.181 4.181 12 C -0.181 4.181 13 C 0.087 3.913 14 C 0.141 3.859 15 H 0.111 0.889 16 N -0.727 5.727 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.125 4.125 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.400 0.600 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.614 15.056 16.610 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.117 0.883 4 C -0.015 4.015 5 N -0.354 5.354 6 C 0.320 3.680 7 O -0.421 6.421 8 C -0.174 4.174 9 C -0.110 4.110 10 C -0.174 4.174 11 C -0.218 4.218 12 C -0.218 4.218 13 C -0.037 4.037 14 C 0.034 3.966 15 H 0.129 0.871 16 N -0.383 5.383 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.276 4.276 20 S 0.086 5.914 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.236 0.764 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.794 15.614 15.779 26.135 hybrid contribution -0.877 -0.864 0.448 1.310 sum 12.917 14.749 16.227 25.450 Atomic orbital electron populations 1.21665 0.92891 1.02524 1.02855 1.22722 0.97209 0.99603 0.93492 0.88251 1.22377 0.83112 0.98374 0.97653 1.48532 1.12292 1.67482 1.07113 1.20448 0.84961 0.76516 0.86124 1.90703 1.83277 1.53514 1.14646 1.21659 0.92271 1.03433 1.00057 1.20914 0.91424 1.02344 0.96326 1.22351 0.95128 0.99732 1.00187 1.23063 1.04070 0.91026 1.03613 1.22961 0.97016 1.03230 0.98599 1.22628 0.98693 1.02891 0.79476 1.21834 0.88458 0.87904 0.98369 0.87135 1.46039 1.43711 1.33022 1.15514 1.20322 0.82899 0.83713 0.81083 1.90706 1.38728 1.63430 1.46186 1.23284 1.02005 0.97895 1.04398 1.84773 1.56530 1.40571 1.09503 1.22307 1.25478 1.15063 1.04134 0.89382 1.24722 0.94691 0.93726 0.98207 1.69934 1.34996 1.18167 1.28493 0.86733 0.80913 0.81932 0.82246 1.19210 1.19931 1.15918 0.92110 0.91803 0.91365 0.91256 0.90069 0.88580 0.88795 0.90875 0.91039 0.87649 0.88701 0.88801 0.88861 0.88777 0.90229 0.90284 0.76375 0.88515 0.88390 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.85 37.16 0.33 -0.54 16 2 C -0.11 -0.75 3.53 -88.35 -0.31 -1.06 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.11 0.90 6.36 -2.41 -0.02 0.88 16 5 N -0.62 -5.95 3.32 -170.38 -0.57 -6.52 16 6 C 0.53 5.86 7.85 -10.98 -0.09 5.78 16 7 O -0.54 -7.84 16.23 5.56 0.09 -7.75 16 8 C -0.13 -1.13 4.85 -27.88 -0.14 -1.26 16 9 C -0.07 -0.62 4.79 -26.73 -0.13 -0.75 16 10 C -0.16 -1.17 5.74 -90.62 -0.52 -1.69 16 11 C -0.18 -1.35 10.18 -26.73 -0.27 -1.62 16 12 C -0.18 -1.28 10.25 -26.73 -0.27 -1.55 16 13 C 0.09 0.79 6.22 -3.07 -0.02 0.77 16 14 C 0.14 1.28 3.00 -66.10 -0.20 1.08 16 15 H 0.11 1.10 7.69 -51.93 -0.40 0.70 16 16 N -0.73 -7.84 4.57 -52.03 -0.24 -8.08 16 17 C 0.53 8.39 7.84 -10.98 -0.09 8.30 16 18 O -0.52 -9.91 15.59 5.56 0.09 -9.82 16 19 C -0.13 -2.25 6.16 36.01 0.22 -2.03 16 20 S -0.14 -3.40 18.55 -107.50 -1.99 -5.40 16 21 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 22 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 23 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 24 N -0.88 -26.16 13.97 55.49 0.78 -25.39 16 25 Si 0.86 21.33 27.74 -169.99 -4.71 16.61 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 29 H 0.06 0.37 6.39 -51.93 -0.33 0.04 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.58 7.99 -51.93 -0.41 0.16 16 33 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.68 8.10 -51.93 -0.42 0.25 16 37 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 38 H 0.11 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 45 H 0.40 3.52 6.92 -40.82 -0.28 3.24 16 46 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 47 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -34.32 405.09 -9.89 -44.21 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.15 Total: 1.44 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.28 Total: -5.42 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.03 Total: -39.98 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.18 Total: -17.57 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.32 -9.89 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071834201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.016 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds