Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.89007 * 2 1 4 4 C 1.55136 * 110.93678 * 124.07341 * 2 1 3 5 5 N 1.47422 * 104.72246 * 155.28388 * 4 2 1 6 6 C 1.34773 * 125.64458 * 155.81445 * 5 4 2 7 7 O 1.21283 * 120.00360 * 359.44801 * 6 5 4 8 8 C 1.50706 * 120.00081 * 179.72077 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.72561 * 8 6 5 10 10 C 1.52996 * 109.46929 * 179.97438 * 9 8 6 11 11 C 1.53004 * 117.49800 * 243.62193 * 10 9 8 12 12 C 1.52998 * 60.00090 * 252.51538 * 11 10 9 13 13 C 1.47014 * 108.70374 * 335.55682 * 5 4 2 14 14 C 1.54322 * 107.27676 * 1.28395 * 13 5 4 15 15 H 1.08995 * 110.72455 * 140.55753 * 14 13 5 16 16 N 1.46496 * 110.71947 * 263.65739 * 14 13 5 17 17 C 1.34780 * 119.99801 * 273.53784 * 16 14 13 18 18 O 1.21280 * 119.99956 * 0.02562 * 17 16 14 19 19 C 1.50704 * 120.00174 * 179.97438 * 17 16 14 20 20 S 1.80992 * 109.47180 * 180.02562 * 19 17 16 21 21 C 1.76203 * 99.99860 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00132 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99679 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99774 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00268 * 359.97438 * 23 21 20 26 26 H 1.48510 * 109.46829 * 89.99785 * 25 23 21 27 27 H 1.48498 * 109.47188 * 209.99672 * 25 23 21 28 28 H 1.48498 * 109.47115 * 330.00376 * 25 23 21 29 29 H 1.08991 * 109.47817 * 183.88022 * 1 2 3 30 30 H 1.08996 * 109.46984 * 303.89077 * 1 2 3 31 31 H 1.09005 * 109.46540 * 63.88243 * 1 2 3 32 32 H 1.09003 * 110.49305 * 36.44624 * 4 2 1 33 33 H 1.08994 * 110.34307 * 274.05345 * 4 2 1 34 34 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 35 35 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 36 36 H 1.09000 * 109.46986 * 300.00089 * 9 8 6 37 37 H 1.09002 * 109.46857 * 60.00224 * 9 8 6 38 38 H 1.08996 * 115.55532 * 29.33113 * 10 9 8 39 39 H 1.09000 * 117.49771 * 0.02562 * 11 10 9 40 40 H 1.09001 * 117.49983 * 145.02642 * 11 10 9 41 41 H 1.09004 * 117.49334 * 252.51492 * 12 11 10 42 42 H 1.09000 * 117.50086 * 107.49108 * 12 11 10 43 43 H 1.09004 * 109.88637 * 120.70541 * 13 5 4 44 44 H 1.09002 * 109.88312 * 241.86672 * 13 5 4 45 45 H 0.97001 * 120.00354 * 93.54489 * 16 14 13 46 46 H 1.09000 * 109.47045 * 300.00794 * 19 17 16 47 47 H 1.09001 * 109.46518 * 60.00324 * 19 17 16 48 48 H 0.96997 * 120.00412 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0844 -0.8118 1.2002 5 7 3.4279 -1.2423 0.7726 6 6 4.4488 -1.5604 1.5930 7 8 4.3039 -1.4942 2.7953 8 6 5.7724 -1.9925 1.0163 9 6 6.7527 -2.2864 2.1536 10 6 8.0962 -2.7257 1.5680 11 6 8.5691 -4.1482 1.8743 12 6 9.2516 -2.9542 2.5447 13 6 3.4678 -1.2732 -0.6966 14 6 2.0862 -0.8076 -1.2025 15 1 2.1916 -0.1696 -2.0799 16 7 1.2287 -1.9575 -1.5002 17 6 1.2842 -2.5434 -2.7127 18 8 2.0442 -2.1190 -3.5571 19 6 0.4025 -3.7267 -3.0189 20 16 0.7076 -4.2839 -4.7137 21 6 -0.4215 -5.6339 -4.7998 22 1 -1.0330 -5.8818 -3.9448 23 6 -0.5251 -6.3786 -5.9665 24 7 -1.3682 -7.3874 -6.0307 25 14 0.5320 -5.9493 -7.4456 26 1 1.8113 -6.7001 -7.3743 27 1 -0.1880 -6.3154 -8.6917 28 1 0.8132 -4.4912 -7.4465 29 1 -0.3634 -1.0252 0.0695 30 1 -0.3633 0.5730 0.8530 31 1 -0.3632 0.4524 -0.9228 32 1 1.4536 -1.6783 1.3987 33 1 2.1523 -0.1801 2.0858 34 1 5.6312 -2.8917 0.4167 35 1 6.1724 -1.1963 0.3884 36 1 6.8938 -1.3872 2.7532 37 1 6.3527 -3.0827 2.7814 38 1 8.3392 -2.3142 0.5884 39 1 7.9229 -4.7712 2.4926 40 1 9.1233 -4.6729 1.0960 41 1 10.2548 -2.6934 2.2073 42 1 9.0546 -2.7916 3.6043 43 1 4.2426 -0.5985 -1.0608 44 1 3.6657 -2.2884 -1.0408 45 1 0.6210 -2.2972 -0.8247 46 1 0.6271 -4.5364 -2.3245 47 1 -0.6431 -3.4375 -2.9137 48 1 -1.4404 -7.9081 -6.8459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071834201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = -79.562501 kcal Electronic energy + Delta-G solvation = -26884.407454 eV Core-core repulsion = 23064.914883 eV Total energy + Delta-G solvation = -3819.492571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66311 -40.48964 -38.94656 -38.24819 -35.23324 -34.66040 -33.75920 -32.87189 -31.34815 -29.32829 -28.02241 -27.83142 -25.51502 -23.96869 -23.22595 -22.21960 -21.34688 -21.07195 -20.16413 -19.91095 -18.29850 -17.86377 -17.59328 -17.10347 -16.97036 -16.71368 -16.36350 -16.23222 -15.85180 -15.46914 -15.08192 -14.91436 -14.80700 -14.75512 -14.54640 -13.98376 -13.65455 -13.57806 -13.45591 -13.32915 -13.19065 -13.08895 -12.99509 -12.67918 -12.49976 -12.36930 -12.28479 -12.15882 -11.97793 -11.85064 -11.70414 -11.28536 -11.15991 -11.00602 -10.92356 -10.78152 -10.52392 -10.22794 -9.74029 -8.97304 -8.50442 -6.20826 1.00360 1.32850 1.47742 1.54288 1.56019 1.57189 1.89567 2.21118 2.26583 2.72295 2.87954 2.89352 3.18785 3.46838 3.59593 3.77699 3.82928 3.86861 4.00872 4.03854 4.18737 4.20686 4.24722 4.33156 4.34926 4.44694 4.49117 4.52804 4.59051 4.67235 4.72111 4.77366 4.79047 4.79776 4.99836 5.03051 5.04708 5.09222 5.12590 5.19727 5.26056 5.38581 5.41007 5.45313 5.71501 6.12732 6.38919 6.42462 6.94672 7.06414 7.17190 8.61958 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.002492 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.768264 B =11235.090928 C =13197.343064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.116 0.884 4 C 0.102 3.898 5 N -0.617 5.617 6 C 0.524 3.476 7 O -0.584 6.584 8 C -0.129 4.129 9 C -0.067 4.067 10 C -0.157 4.157 11 C -0.187 4.187 12 C -0.180 4.180 13 C 0.090 3.910 14 C 0.137 3.863 15 H 0.109 0.891 16 N -0.704 5.704 17 C 0.542 3.458 18 O -0.552 6.552 19 C -0.115 4.115 20 S -0.169 6.169 21 C -0.530 4.530 22 H 0.060 0.940 23 C 0.043 3.957 24 N -0.918 5.918 25 Si 0.916 3.084 26 H -0.263 1.263 27 H -0.262 1.262 28 H -0.233 1.233 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.413 0.587 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.573 16.778 16.568 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.134 0.866 4 C -0.020 4.020 5 N -0.351 5.351 6 C 0.315 3.685 7 O -0.464 6.464 8 C -0.168 4.168 9 C -0.105 4.105 10 C -0.176 4.176 11 C -0.224 4.224 12 C -0.217 4.217 13 C -0.034 4.034 14 C 0.032 3.968 15 H 0.127 0.873 16 N -0.359 5.359 17 C 0.328 3.672 18 O -0.430 6.430 19 C -0.266 4.266 20 S 0.058 5.942 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.162 4.162 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.186 1.186 28 H -0.157 1.157 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.251 0.749 46 H 0.127 0.873 47 H 0.131 0.869 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.728 17.349 15.767 27.686 hybrid contribution -1.226 -1.357 0.647 1.940 sum 13.502 15.993 16.413 26.598 Atomic orbital electron populations 1.21686 0.92091 1.02817 1.03383 1.22668 0.97688 0.99664 0.91100 0.86588 1.22499 0.82655 0.98625 0.98252 1.48585 1.12491 1.66662 1.07315 1.20903 0.85920 0.75965 0.85726 1.90684 1.84038 1.55399 1.16330 1.21675 0.90890 1.04272 1.00006 1.20822 0.92164 1.01318 0.96222 1.22358 0.94609 0.99813 1.00774 1.23113 1.04272 0.91106 1.03924 1.23037 0.97441 1.02702 0.98496 1.22623 0.99160 1.02651 0.78947 1.22002 0.88388 0.87171 0.99256 0.87272 1.45805 1.43424 1.32712 1.13958 1.19824 0.82124 0.83111 0.82144 1.90700 1.40199 1.64402 1.47658 1.23286 1.03689 0.99452 1.00144 1.84633 1.55487 1.39050 1.15043 1.22484 1.25637 1.16335 1.03268 0.92131 1.25605 0.95903 0.93686 1.01026 1.70021 1.36621 1.19365 1.29637 0.85848 0.79408 0.81747 0.79251 1.18736 1.18596 1.15690 0.92084 0.90488 0.91543 0.91216 0.90420 0.88047 0.86648 0.91737 0.92798 0.86487 0.89296 0.88089 0.87682 0.88989 0.88285 0.91590 0.74917 0.87321 0.86878 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.85 71.98 0.64 -0.68 16 2 C -0.09 -0.98 3.53 -9.32 -0.03 -1.02 16 3 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.10 1.50 6.36 86.93 0.55 2.05 16 5 N -0.62 -10.76 3.32 -811.36 -2.70 -13.46 16 6 C 0.52 11.09 7.85 87.66 0.69 11.78 16 7 O -0.58 -16.79 16.23 -3.04 -0.05 -16.84 16 8 C -0.13 -1.99 4.85 29.85 0.14 -1.85 16 9 C -0.07 -1.13 4.79 30.59 0.15 -0.98 16 10 C -0.16 -2.18 5.74 -10.79 -0.06 -2.24 16 11 C -0.19 -2.63 10.18 30.59 0.31 -2.32 16 12 C -0.18 -2.34 10.25 30.59 0.31 -2.03 16 13 C 0.09 1.42 6.22 86.73 0.54 1.96 16 14 C 0.14 2.14 3.00 46.18 0.14 2.28 16 15 H 0.11 1.88 7.69 -2.39 -0.02 1.86 16 16 N -0.70 -13.51 4.57 -436.91 -2.00 -15.51 16 17 C 0.54 16.05 7.84 87.66 0.69 16.74 16 18 O -0.55 -20.35 15.59 -3.03 -0.05 -20.39 16 19 C -0.11 -3.98 6.16 71.24 0.44 -3.54 16 20 S -0.17 -8.09 18.55 -56.49 -1.05 -9.14 16 21 C -0.53 -30.07 10.04 67.95 0.68 -29.38 16 22 H 0.06 3.65 8.03 -2.91 -0.02 3.62 16 23 C 0.04 2.48 5.50 84.86 0.47 2.95 16 24 N -0.92 -55.30 13.97 21.65 0.30 -55.00 16 25 Si 0.92 43.93 27.74 68.60 1.90 45.83 16 26 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.23 -11.03 6.74 99.48 0.67 -10.36 16 29 H 0.06 0.57 6.39 -2.39 -0.02 0.55 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 1.03 7.99 -2.39 -0.02 1.01 16 33 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 37 H 0.05 1.08 7.83 -2.39 -0.02 1.06 16 38 H 0.12 1.36 8.07 -2.39 -0.02 1.34 16 39 H 0.09 1.33 8.03 -2.39 -0.02 1.31 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 45 H 0.41 6.15 6.92 -92.71 -0.64 5.51 16 46 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 47 H 0.11 3.59 8.14 -2.39 -0.02 3.58 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -74.92 405.09 2.29 -72.63 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.27 Total: 18.17 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.65 Total: -6.28 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -4.39 Total: -83.97 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.10 Total: -37.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.83 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.05 Total: -9.14 kcal Total: -74.92 2.29 -72.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071834201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.930 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds