Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.77867 * 2 1 4 4 C 1.54332 * 110.85335 * 236.93208 * 2 1 3 5 5 N 1.47013 * 107.26656 * 219.67035 * 4 2 1 6 6 C 1.34779 * 125.65033 * 178.84929 * 5 4 2 7 7 O 1.21287 * 119.99458 * 359.71809 * 6 5 4 8 8 C 1.50698 * 120.00253 * 179.71868 * 6 5 4 9 9 C 1.53006 * 109.46914 * 179.97438 * 8 6 5 10 10 C 1.53772 * 113.61475 * 272.49534 * 9 8 6 11 11 C 1.53781 * 87.08354 * 220.02318 * 10 9 8 12 12 C 1.53781 * 113.61135 * 174.99629 * 9 8 6 13 13 C 1.47422 * 108.70336 * 358.58395 * 5 4 2 14 14 C 1.54906 * 104.83235 * 24.35803 * 13 5 4 15 15 H 1.09005 * 111.00553 * 81.06505 * 14 13 5 16 16 N 1.46498 * 111.00242 * 204.87811 * 14 13 5 17 17 C 1.34779 * 119.99934 * 273.54181 * 16 14 13 18 18 O 1.21279 * 119.99832 * 0.02562 * 17 16 14 19 19 C 1.50695 * 119.99931 * 180.02562 * 17 16 14 20 20 S 1.81000 * 109.47202 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00229 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99982 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00091 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99901 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99945 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47103 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47027 * 120.00128 * 25 23 21 28 28 H 1.48505 * 109.46719 * 240.00055 * 25 23 21 29 29 H 1.08999 * 109.46844 * 296.75858 * 1 2 3 30 30 H 1.09002 * 109.47073 * 56.76382 * 1 2 3 31 31 H 1.09001 * 109.46486 * 176.75945 * 1 2 3 32 32 H 1.09004 * 109.99003 * 100.19063 * 4 2 1 33 33 H 1.08996 * 109.77843 * 339.02978 * 4 2 1 34 34 H 1.08995 * 109.47549 * 60.00132 * 8 6 5 35 35 H 1.09000 * 109.46862 * 299.99812 * 8 6 5 36 36 H 1.09000 * 112.84759 * 43.80531 * 9 8 6 37 37 H 1.09000 * 113.61922 * 334.57064 * 10 9 8 38 38 H 1.08999 * 113.61689 * 105.47008 * 10 9 8 39 39 H 1.09005 * 113.61134 * 270.88438 * 11 10 9 40 40 H 1.08994 * 113.69575 * 139.99585 * 11 10 9 41 41 H 1.09000 * 113.61578 * 254.52872 * 12 9 8 42 42 H 1.09007 * 113.61310 * 25.35225 * 12 9 8 43 43 H 1.09004 * 110.36587 * 143.19255 * 13 5 4 44 44 H 1.08998 * 110.36788 * 265.51400 * 13 5 4 45 45 H 0.96997 * 120.00266 * 93.54827 * 16 14 13 46 46 H 1.09003 * 109.47063 * 300.00099 * 19 17 16 47 47 H 1.09004 * 109.47596 * 60.00490 * 19 17 16 48 48 H 0.97000 * 120.00404 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0794 -0.7869 -1.2086 5 7 3.2446 -1.5506 -0.7390 6 6 3.9925 -2.3834 -1.4897 7 8 3.7194 -2.5561 -2.6587 8 6 5.1679 -3.1000 -0.8766 9 6 5.8400 -3.9762 -1.9357 10 6 5.2301 -5.3833 -2.0485 11 6 6.6663 -5.9069 -2.2154 12 6 7.1271 -4.6590 -1.4438 13 6 3.4633 -1.2496 0.6875 14 6 2.0790 -0.7954 1.2138 15 1 1.4453 -1.6536 1.4375 16 7 2.2215 0.0689 2.3880 17 6 2.3156 -0.4749 3.6176 18 8 2.2828 -1.6798 3.7519 19 6 2.4615 0.4142 4.8256 20 16 2.5629 -0.6061 6.3171 21 6 2.7247 0.6531 7.5389 22 1 2.7358 1.6923 7.2452 23 6 2.8378 0.3094 8.8790 24 7 2.8248 -0.9572 9.2369 25 14 3.0087 1.6445 10.1743 26 1 2.9967 2.9761 9.5173 27 1 1.8765 1.5537 11.1310 28 1 4.2893 1.4647 10.9044 29 1 -0.3633 0.4627 0.9176 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3632 -1.0261 -0.0581 32 1 2.3814 -0.0968 -1.9965 33 1 1.3157 -1.4686 -1.5829 34 1 4.8230 -3.7257 -0.0535 35 1 5.8840 -2.3687 -0.5018 36 1 5.9532 -3.4698 -2.8942 37 1 4.7449 -5.7236 -1.1336 38 1 4.6095 -5.5206 -2.9340 39 1 7.0051 -5.9297 -3.2512 40 1 6.8559 -6.8415 -1.6875 41 1 8.0380 -4.2116 -1.8413 42 1 7.1611 -4.8000 -0.3634 43 1 3.7961 -2.1425 1.2169 44 1 4.1932 -0.4477 0.7984 45 1 2.2480 1.0326 2.2806 46 1 3.3696 1.0098 4.7308 47 1 1.5985 1.0763 4.8959 48 1 2.9035 -1.1974 10.1734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071860708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -63.874797 kcal Electronic energy + Delta-G solvation = -26901.552236 eV Core-core repulsion = 23082.739935 eV Total energy + Delta-G solvation = -3818.812301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70396 -39.57391 -38.63887 -37.50513 -34.22567 -32.94898 -32.47576 -30.73643 -30.05153 -27.97100 -26.83403 -25.81618 -25.53397 -23.92766 -22.94018 -20.93209 -20.35270 -19.70342 -19.42882 -17.89375 -17.33086 -16.90376 -16.36756 -16.15745 -15.62711 -15.29960 -14.94846 -14.84952 -14.77482 -14.44467 -14.03461 -13.79299 -13.75617 -13.51543 -13.25754 -12.94445 -12.67096 -12.66764 -12.56175 -12.39515 -12.13352 -12.03436 -11.69815 -11.52102 -11.48824 -11.10881 -11.07256 -10.99632 -10.86817 -10.79282 -10.56760 -10.42566 -9.99700 -9.85809 -9.54284 -9.17698 -9.10927 -8.85902 -8.29767 -6.55901 -6.26708 -3.97657 2.44046 2.58430 2.92915 2.99438 3.18174 3.24674 3.28740 3.59455 4.00154 4.15518 4.22550 4.30879 4.39034 4.46017 4.49870 4.62530 4.72404 4.83834 4.96366 5.04374 5.07674 5.08891 5.10669 5.18973 5.30711 5.34283 5.41961 5.47378 5.51319 5.52056 5.52582 5.57135 5.64691 5.66660 5.70583 5.79195 5.81133 5.83223 5.94199 5.96556 6.04378 6.06342 6.28859 6.46115 7.23094 7.53986 7.55918 7.95346 8.30531 8.46392 9.19021 10.80730 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.002231 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.118089 B =12547.555988 C =14213.800891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.091 0.909 4 C 0.114 3.886 5 N -0.620 5.620 6 C 0.532 3.468 7 O -0.541 6.541 8 C -0.130 4.130 9 C -0.095 4.095 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.139 4.139 13 C 0.086 3.914 14 C 0.142 3.858 15 H 0.105 0.895 16 N -0.728 5.728 17 C 0.534 3.466 18 O -0.513 6.513 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.401 0.599 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -0.008 -22.935 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.109 0.891 4 C -0.009 4.009 5 N -0.355 5.355 6 C 0.321 3.679 7 O -0.418 6.418 8 C -0.169 4.169 9 C -0.114 4.114 10 C -0.172 4.172 11 C -0.180 4.180 12 C -0.176 4.176 13 C -0.039 4.039 14 C 0.035 3.965 15 H 0.123 0.877 16 N -0.383 5.383 17 C 0.321 3.679 18 O -0.386 6.386 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.236 0.764 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.390 -2.316 -23.230 23.467 hybrid contribution 0.166 2.838 0.791 2.951 sum 2.557 0.522 -22.438 22.590 Atomic orbital electron populations 1.21764 0.92904 1.02733 1.02606 1.22515 0.97286 0.99669 0.93489 0.89069 1.21978 0.88019 0.94632 0.96268 1.48451 1.30664 1.45013 1.11368 1.20455 0.83421 0.78061 0.85913 1.90689 1.70970 1.63677 1.16435 1.21727 0.95544 0.99841 0.99835 1.22353 0.95694 0.94603 0.98715 1.22951 0.96396 0.95585 1.02317 1.22791 0.96898 0.97773 1.00572 1.22993 0.97170 0.96849 1.00592 1.22817 0.98462 1.02095 0.80513 1.22020 0.95296 0.94551 0.84625 0.87677 1.45902 1.77176 1.09863 1.05331 1.20385 0.74886 0.89169 0.83502 1.90715 1.47422 1.14936 1.85573 1.23534 1.04936 1.03177 0.98802 1.85409 1.95739 1.09600 0.92564 1.22897 1.58272 0.93976 0.93221 0.90850 1.24998 0.94551 0.96191 0.97866 1.70020 1.46685 1.15882 1.17648 0.86115 0.77980 0.80842 0.80548 1.19614 1.20548 1.20549 0.91520 0.91979 0.92001 0.91155 0.90931 0.88530 0.88720 0.88344 0.90220 0.91333 0.90310 0.91439 0.91450 0.89844 0.89472 0.90724 0.76437 0.89110 0.89112 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.16 37.16 0.34 -0.65 16 2 C -0.11 -0.82 3.16 -88.78 -0.28 -1.10 16 3 H 0.09 0.56 8.00 -51.93 -0.42 0.14 16 4 C 0.11 1.02 6.48 -3.06 -0.02 1.00 16 5 N -0.62 -6.39 3.33 -170.52 -0.57 -6.95 16 6 C 0.53 6.18 7.85 -10.99 -0.09 6.09 16 7 O -0.54 -7.92 16.08 5.55 0.09 -7.83 16 8 C -0.13 -1.19 4.54 -27.88 -0.13 -1.31 16 9 C -0.09 -0.86 3.15 -89.81 -0.28 -1.15 16 10 C -0.14 -1.22 7.63 -25.92 -0.20 -1.42 16 11 C -0.14 -1.10 8.08 -25.92 -0.21 -1.31 16 12 C -0.14 -1.06 7.64 -25.92 -0.20 -1.26 16 13 C 0.09 0.85 6.38 -2.53 -0.02 0.83 16 14 C 0.14 1.44 2.77 -65.79 -0.18 1.25 16 15 H 0.11 1.29 7.63 -51.93 -0.40 0.89 16 16 N -0.73 -8.09 5.23 -51.73 -0.27 -8.37 16 17 C 0.53 8.83 7.85 -10.99 -0.09 8.75 16 18 O -0.51 -10.54 15.61 5.56 0.09 -10.46 16 19 C -0.15 -2.85 6.16 36.00 0.22 -2.63 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -14.76 9.50 30.94 0.29 -14.47 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 24 N -0.87 -25.57 13.22 55.49 0.73 -24.84 16 25 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 34 H 0.10 0.84 7.55 -51.93 -0.39 0.45 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.01 7.67 -51.93 -0.40 0.61 16 37 H 0.08 0.70 7.89 -51.93 -0.41 0.29 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.09 0.95 7.48 -51.93 -0.39 0.56 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.40 3.30 8.52 -40.82 -0.35 2.95 16 46 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 47 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -34.37 405.12 -10.17 -44.54 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.19 Total: 1.10 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.93 Total: -5.42 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.10 Total: -40.16 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.37 -10.17 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.331 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds