Wall clock time and date at job start Sat Apr 11 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.77867 * 2 1 4 4 C 1.54332 * 110.85335 * 236.93208 * 2 1 3 5 5 N 1.47013 * 107.26656 * 219.67035 * 4 2 1 6 6 C 1.34779 * 125.65033 * 178.84929 * 5 4 2 7 7 O 1.21287 * 119.99458 * 359.71809 * 6 5 4 8 8 C 1.50698 * 120.00253 * 179.71868 * 6 5 4 9 9 C 1.53006 * 109.46914 * 179.97438 * 8 6 5 10 10 C 1.53772 * 113.61475 * 272.49534 * 9 8 6 11 11 C 1.53781 * 87.08354 * 220.02318 * 10 9 8 12 12 C 1.53781 * 113.61135 * 174.99629 * 9 8 6 13 13 C 1.47422 * 108.70336 * 358.58395 * 5 4 2 14 14 C 1.54906 * 104.83235 * 24.35803 * 13 5 4 15 15 H 1.09005 * 111.00553 * 81.06505 * 14 13 5 16 16 N 1.46498 * 111.00242 * 204.87811 * 14 13 5 17 17 C 1.34779 * 119.99934 * 273.54181 * 16 14 13 18 18 O 1.21279 * 119.99832 * 0.02562 * 17 16 14 19 19 C 1.50695 * 119.99931 * 180.02562 * 17 16 14 20 20 S 1.81000 * 109.47202 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00229 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99982 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00091 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99901 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99945 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47103 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47027 * 120.00128 * 25 23 21 28 28 H 1.48505 * 109.46719 * 240.00055 * 25 23 21 29 29 H 1.08999 * 109.46844 * 296.75858 * 1 2 3 30 30 H 1.09002 * 109.47073 * 56.76382 * 1 2 3 31 31 H 1.09001 * 109.46486 * 176.75945 * 1 2 3 32 32 H 1.09004 * 109.99003 * 100.19063 * 4 2 1 33 33 H 1.08996 * 109.77843 * 339.02978 * 4 2 1 34 34 H 1.08995 * 109.47549 * 60.00132 * 8 6 5 35 35 H 1.09000 * 109.46862 * 299.99812 * 8 6 5 36 36 H 1.09000 * 112.84759 * 43.80531 * 9 8 6 37 37 H 1.09000 * 113.61922 * 334.57064 * 10 9 8 38 38 H 1.08999 * 113.61689 * 105.47008 * 10 9 8 39 39 H 1.09005 * 113.61134 * 270.88438 * 11 10 9 40 40 H 1.08994 * 113.69575 * 139.99585 * 11 10 9 41 41 H 1.09000 * 113.61578 * 254.52872 * 12 9 8 42 42 H 1.09007 * 113.61310 * 25.35225 * 12 9 8 43 43 H 1.09004 * 110.36587 * 143.19255 * 13 5 4 44 44 H 1.08998 * 110.36788 * 265.51400 * 13 5 4 45 45 H 0.96997 * 120.00266 * 93.54827 * 16 14 13 46 46 H 1.09003 * 109.47063 * 300.00099 * 19 17 16 47 47 H 1.09004 * 109.47596 * 60.00490 * 19 17 16 48 48 H 0.97000 * 120.00404 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0794 -0.7869 -1.2086 5 7 3.2446 -1.5506 -0.7390 6 6 3.9925 -2.3834 -1.4897 7 8 3.7194 -2.5561 -2.6587 8 6 5.1679 -3.1000 -0.8766 9 6 5.8400 -3.9762 -1.9357 10 6 5.2301 -5.3833 -2.0485 11 6 6.6663 -5.9069 -2.2154 12 6 7.1271 -4.6590 -1.4438 13 6 3.4633 -1.2496 0.6875 14 6 2.0790 -0.7954 1.2138 15 1 1.4453 -1.6536 1.4375 16 7 2.2215 0.0689 2.3880 17 6 2.3156 -0.4749 3.6176 18 8 2.2828 -1.6798 3.7519 19 6 2.4615 0.4142 4.8256 20 16 2.5629 -0.6061 6.3171 21 6 2.7247 0.6531 7.5389 22 1 2.7358 1.6923 7.2452 23 6 2.8378 0.3094 8.8790 24 7 2.8248 -0.9572 9.2369 25 14 3.0087 1.6445 10.1743 26 1 2.9967 2.9761 9.5173 27 1 1.8765 1.5537 11.1310 28 1 4.2893 1.4647 10.9044 29 1 -0.3633 0.4627 0.9176 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3632 -1.0261 -0.0581 32 1 2.3814 -0.0968 -1.9965 33 1 1.3157 -1.4686 -1.5829 34 1 4.8230 -3.7257 -0.0535 35 1 5.8840 -2.3687 -0.5018 36 1 5.9532 -3.4698 -2.8942 37 1 4.7449 -5.7236 -1.1336 38 1 4.6095 -5.5206 -2.9340 39 1 7.0051 -5.9297 -3.2512 40 1 6.8559 -6.8415 -1.6875 41 1 8.0380 -4.2116 -1.8413 42 1 7.1611 -4.8000 -0.3634 43 1 3.7961 -2.1425 1.2169 44 1 4.1932 -0.4477 0.7984 45 1 2.2480 1.0326 2.2806 46 1 3.3696 1.0098 4.7308 47 1 1.5985 1.0763 4.8959 48 1 2.9035 -1.1974 10.1734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071860708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:57 Heat of formation + Delta-G solvation = -85.823592 kcal Electronic energy + Delta-G solvation = -26902.504007 eV Core-core repulsion = 23082.739935 eV Total energy + Delta-G solvation = -3819.764072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59878 -40.62182 -39.53330 -38.45550 -35.31073 -34.56141 -33.79565 -31.51032 -31.27122 -29.07395 -27.62228 -27.52291 -26.48425 -24.70062 -23.79312 -21.81574 -21.46048 -20.45487 -20.21872 -19.76760 -18.24021 -17.95278 -17.48068 -17.09618 -16.86048 -16.65278 -16.38711 -15.90655 -15.89276 -15.44835 -15.10615 -14.76151 -14.63849 -14.58275 -14.31868 -14.27386 -13.75766 -13.53481 -13.35152 -13.32312 -13.13758 -13.10715 -12.90643 -12.77907 -12.58946 -12.39213 -12.32686 -12.16626 -11.75121 -11.64691 -11.56095 -11.28990 -11.14076 -11.10218 -10.96460 -10.85942 -10.23449 -10.21972 -9.74512 -8.63078 -8.33041 -6.09831 1.28011 1.42581 1.47297 1.53636 1.58569 1.61433 1.83114 2.27928 2.33674 3.01577 3.20337 3.36312 3.44092 3.56351 3.70282 3.76460 3.80765 3.94187 3.97150 4.01661 4.14816 4.18906 4.35998 4.38145 4.42513 4.48874 4.56907 4.60516 4.64338 4.68525 4.77166 4.84448 4.85049 4.88154 4.96690 4.98855 5.08038 5.08584 5.12411 5.17879 5.33635 5.36575 5.44833 5.47023 5.60810 6.22212 6.36383 6.50675 7.06121 7.09156 7.25112 8.76142 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.002231 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.118089 B =12547.555988 C =14213.800891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.118 0.882 4 C 0.110 3.890 5 N -0.619 5.619 6 C 0.526 3.474 7 O -0.577 6.577 8 C -0.126 4.126 9 C -0.098 4.098 10 C -0.142 4.142 11 C -0.139 4.139 12 C -0.131 4.131 13 C 0.089 3.911 14 C 0.140 3.860 15 H 0.082 0.918 16 N -0.699 5.699 17 C 0.539 3.461 18 O -0.559 6.559 19 C -0.130 4.130 20 S -0.151 6.151 21 C -0.543 4.543 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.275 1.275 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.421 0.579 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 2.653 -23.434 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.136 0.864 4 C -0.013 4.013 5 N -0.353 5.353 6 C 0.317 3.683 7 O -0.457 6.457 8 C -0.165 4.165 9 C -0.117 4.117 10 C -0.179 4.179 11 C -0.176 4.176 12 C -0.168 4.168 13 C -0.035 4.035 14 C 0.033 3.967 15 H 0.100 0.900 16 N -0.353 5.353 17 C 0.326 3.674 18 O -0.437 6.437 19 C -0.281 4.281 20 S 0.076 5.924 21 C -0.691 4.691 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.818 3.182 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.201 1.201 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.259 0.741 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.903 0.400 -23.760 23.941 hybrid contribution -0.048 2.015 0.799 2.168 sum 2.855 2.415 -22.961 23.264 Atomic orbital electron populations 1.21770 0.92353 1.02443 1.03362 1.22471 0.97571 1.00204 0.90843 0.86393 1.22105 0.87430 0.94634 0.97114 1.48496 1.30721 1.44645 1.11409 1.20882 0.83894 0.77955 0.85566 1.90669 1.72072 1.64921 1.17988 1.21757 0.94985 1.00073 0.99729 1.22328 0.96719 0.94408 0.98208 1.22987 0.97147 0.96135 1.01667 1.22796 0.95580 0.98201 1.01051 1.22968 0.96662 0.96292 1.00907 1.22781 0.98484 1.02182 0.80030 1.22039 0.95489 0.94316 0.84854 0.89954 1.45529 1.74966 1.11003 1.03805 1.20048 0.74802 0.88119 0.84481 1.90714 1.49928 1.16735 1.86291 1.23373 1.06900 1.02226 0.95625 1.85587 1.96067 1.13423 0.97327 1.23238 1.57776 0.94322 0.93756 0.89830 1.26099 0.94009 0.98645 1.00457 1.70182 1.48058 1.18360 1.18204 0.84938 0.77943 0.78041 0.77241 1.17941 1.20150 1.20087 0.91573 0.90224 0.93061 0.90366 0.91745 0.88147 0.87091 0.89729 0.90270 0.92750 0.89858 0.90678 0.90527 0.89283 0.90659 0.88990 0.74095 0.86901 0.87111 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.16 71.98 0.66 -0.99 16 2 C -0.09 -1.12 3.16 -9.60 -0.03 -1.15 16 3 H 0.12 0.91 8.00 -2.39 -0.02 0.89 16 4 C 0.11 1.78 6.48 86.73 0.56 2.35 16 5 N -0.62 -12.09 3.33 -811.80 -2.70 -14.79 16 6 C 0.53 12.07 7.85 87.66 0.69 12.76 16 7 O -0.58 -17.13 16.08 -3.05 -0.05 -17.18 16 8 C -0.13 -2.23 4.54 29.85 0.14 -2.10 16 9 C -0.10 -1.76 3.15 -10.27 -0.03 -1.79 16 10 C -0.14 -2.60 7.63 31.12 0.24 -2.36 16 11 C -0.14 -2.03 8.08 31.12 0.25 -1.78 16 12 C -0.13 -1.85 7.64 31.12 0.24 -1.61 16 13 C 0.09 1.63 6.38 86.85 0.55 2.19 16 14 C 0.14 2.59 2.77 46.38 0.13 2.71 16 15 H 0.08 1.99 7.63 -2.38 -0.02 1.97 16 16 N -0.70 -13.73 5.23 -435.97 -2.28 -16.01 16 17 C 0.54 17.15 7.85 87.66 0.69 17.83 16 18 O -0.56 -23.21 15.61 -3.03 -0.05 -23.26 16 19 C -0.13 -4.60 6.16 71.23 0.44 -4.16 16 20 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 21 C -0.54 -29.79 9.50 67.95 0.65 -29.14 16 22 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 23 C 0.01 0.70 5.49 84.86 0.47 1.16 16 24 N -0.91 -54.73 13.22 21.65 0.29 -54.44 16 25 Si 1.00 42.39 29.55 68.60 2.03 44.42 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 27 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.71 8.07 -2.39 -0.02 0.70 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 1.17 7.77 -2.39 -0.02 1.15 16 34 H 0.10 1.71 7.55 -2.39 -0.02 1.69 16 35 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.76 7.67 -2.39 -0.02 1.75 16 37 H 0.08 1.43 7.89 -2.39 -0.02 1.41 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.17 8.10 -2.38 -0.02 1.15 16 43 H 0.07 1.59 7.48 -2.38 -0.02 1.57 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.42 5.20 8.52 -92.71 -0.79 4.41 16 46 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 47 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 48 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -77.34 405.12 1.86 -75.48 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.16 Total: 20.97 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.63 Total: -6.07 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -4.69 Total: -85.24 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.10 Total: -40.44 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -77.34 1.86 -75.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.345 kcal (2) G-P(sol) polarization free energy of solvation -77.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds