Wall clock time and date at job start Sat Apr 11 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.77420 * 2 1 4 4 C 1.54319 * 110.71786 * 123.23498 * 2 1 3 5 5 N 1.47029 * 107.26737 * 140.55796 * 4 2 1 6 6 C 1.34778 * 125.64742 * 181.01998 * 5 4 2 7 7 O 1.21278 * 119.99842 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99651 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.46728 * 180.02562 * 8 6 5 10 10 C 1.53786 * 113.61503 * 85.86370 * 9 8 6 11 11 C 1.54049 * 86.98426 * 140.01654 * 10 9 8 12 12 C 1.53781 * 113.61337 * 183.47164 * 9 8 6 13 13 C 1.47428 * 108.70422 * 1.28795 * 5 4 2 14 14 C 1.55135 * 104.72072 * 335.55375 * 13 5 4 15 15 H 1.08995 * 110.94112 * 155.28780 * 14 13 5 16 16 N 1.46500 * 111.18889 * 279.19263 * 14 13 5 17 17 C 1.34780 * 119.99698 * 267.18668 * 16 14 13 18 18 O 1.21277 * 120.00421 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99670 * 180.02562 * 17 16 14 20 20 S 1.81004 * 109.46883 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00082 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99974 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00108 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99637 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99970 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46878 * 60.00878 * 25 23 21 27 27 H 1.48499 * 109.47109 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47517 * 300.00834 * 25 23 21 29 29 H 1.09001 * 109.47492 * 298.21282 * 1 2 3 30 30 H 1.08996 * 109.47054 * 58.21883 * 1 2 3 31 31 H 1.09008 * 109.46959 * 178.21541 * 1 2 3 32 32 H 1.09001 * 109.88650 * 21.14981 * 4 2 1 33 33 H 1.08996 * 109.88483 * 259.97292 * 4 2 1 34 34 H 1.09000 * 109.47223 * 60.00290 * 8 6 5 35 35 H 1.08997 * 109.47305 * 299.99950 * 8 6 5 36 36 H 1.09002 * 112.85017 * 314.66753 * 9 8 6 37 37 H 1.08992 * 113.61675 * 254.61398 * 10 9 8 38 38 H 1.09000 * 113.60973 * 25.51686 * 10 9 8 39 39 H 1.09005 * 113.62125 * 220.02158 * 11 10 9 40 40 H 1.09003 * 113.61268 * 89.11946 * 11 10 9 41 41 H 1.08999 * 113.61567 * 334.48261 * 12 9 8 42 42 H 1.09000 * 113.61379 * 105.30384 * 12 9 8 43 43 H 1.08997 * 110.36570 * 94.47868 * 13 5 4 44 44 H 1.08996 * 110.36645 * 216.80760 * 13 5 4 45 45 H 0.96996 * 120.00283 * 87.18889 * 16 14 13 46 46 H 1.08998 * 109.47225 * 299.99731 * 19 17 16 47 47 H 1.08997 * 109.47540 * 59.99982 * 19 17 16 48 48 H 0.97002 * 119.99787 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5507 0.7390 6 6 3.9924 -2.3834 1.4898 7 8 3.7193 -2.5562 2.6588 8 6 5.1679 -3.0999 0.8767 9 6 5.8399 -3.9761 1.9358 10 6 5.2044 -5.3695 2.0763 11 6 6.6360 -5.9178 2.2276 12 6 7.1066 -4.6884 1.4327 13 6 3.4666 -1.2455 -0.6861 14 6 2.0790 -0.7954 -1.2138 15 1 2.1843 -0.1519 -2.0872 16 7 1.2272 -1.9488 -1.5144 17 6 1.2026 -2.4618 -2.7605 18 8 1.8860 -1.9690 -3.6328 19 6 0.3260 -3.6479 -3.0698 20 16 0.5117 -4.0969 -4.8134 21 6 -0.5899 -5.4697 -4.8949 22 1 -1.1283 -5.7830 -4.0127 23 6 -0.7664 -6.1477 -6.0931 24 7 -0.1105 -5.7654 -7.1684 25 14 -1.9337 -7.6035 -6.1793 26 1 -3.3032 -7.1622 -5.8117 27 1 -1.9431 -8.1494 -7.5603 28 1 -1.4826 -8.6564 -5.2343 29 1 -0.3634 0.4858 0.9056 30 1 -0.3633 0.5412 -0.8735 31 1 -0.3633 -1.0273 -0.0320 32 1 1.3130 -1.4758 1.5775 33 1 2.3740 -0.1023 1.9977 34 1 5.8840 -2.3686 0.5020 35 1 4.8231 -3.7256 0.0535 36 1 5.9771 -3.4609 2.8865 37 1 4.5948 -5.4829 2.9726 38 1 4.6990 -5.7118 1.1733 39 1 6.7992 -6.8622 1.7083 40 1 6.9909 -5.9334 3.2581 41 1 7.1203 -4.8449 0.3541 42 1 8.0317 -4.2515 1.8087 43 1 4.1947 -0.4414 -0.7929 44 1 3.8032 -2.1361 -1.2168 45 1 0.6809 -2.3432 -0.8167 46 1 0.6204 -4.4904 -2.4440 47 1 -0.7146 -3.3928 -2.8696 48 1 -0.2336 -6.2395 -8.0057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071860709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:02 Heat of formation + Delta-G solvation = -60.594378 kcal Electronic energy + Delta-G solvation = -27443.694640 eV Core-core repulsion = 23625.024588 eV Total energy + Delta-G solvation = -3818.670052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77537 -39.57265 -38.54322 -37.47740 -34.08850 -32.72428 -32.45896 -30.70054 -30.06975 -28.18467 -26.80282 -25.77599 -25.51575 -23.94048 -22.91012 -21.01520 -20.15670 -19.65614 -19.31313 -17.96904 -17.20319 -16.89701 -16.42262 -16.14187 -15.62250 -15.25802 -14.89579 -14.83428 -14.76086 -14.58714 -14.06529 -13.82617 -13.64185 -13.28848 -12.99816 -12.95938 -12.71523 -12.62371 -12.57017 -12.46462 -12.07871 -11.98164 -11.67763 -11.61010 -11.26989 -11.09250 -11.06204 -11.05716 -10.83092 -10.78953 -10.52579 -10.39393 -9.94018 -9.85951 -9.52397 -9.22084 -9.08575 -8.74471 -8.29296 -6.54260 -6.24980 -3.95934 2.47973 2.73137 2.93504 2.96030 3.21499 3.25227 3.28059 3.62586 3.96490 4.17442 4.23862 4.32236 4.42690 4.49218 4.51783 4.66419 4.75209 4.86702 5.00015 5.08580 5.10446 5.12815 5.13998 5.22514 5.30602 5.36278 5.37985 5.45381 5.47806 5.54646 5.56343 5.60672 5.67201 5.69722 5.74084 5.76528 5.82827 5.88610 5.94551 6.02498 6.08133 6.08748 6.32460 6.51283 7.26544 7.55956 7.58469 7.99114 8.31772 8.49351 9.20531 10.82357 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.002864 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.872363 B = 9774.723039 C =11763.523572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.098 0.902 4 C 0.109 3.891 5 N -0.620 5.620 6 C 0.531 3.469 7 O -0.541 6.541 8 C -0.129 4.129 9 C -0.094 4.094 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.138 4.138 13 C 0.085 3.915 14 C 0.138 3.862 15 H 0.115 0.885 16 N -0.726 5.726 17 C 0.535 3.465 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.399 0.601 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.993 9.587 18.773 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.117 0.883 4 C -0.013 4.013 5 N -0.355 5.355 6 C 0.321 3.679 7 O -0.418 6.418 8 C -0.169 4.169 9 C -0.113 4.113 10 C -0.172 4.172 11 C -0.180 4.180 12 C -0.176 4.176 13 C -0.039 4.039 14 C 0.031 3.969 15 H 0.133 0.867 16 N -0.381 5.381 17 C 0.321 3.679 18 O -0.389 6.389 19 C -0.305 4.305 20 S 0.169 5.831 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.234 0.766 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.075 10.218 17.785 22.852 hybrid contribution -1.819 -1.646 1.193 2.728 sum 8.256 8.572 18.978 22.401 Atomic orbital electron populations 1.21712 0.93031 1.02617 1.02551 1.22563 0.97342 0.99648 0.93467 0.88328 1.22024 0.88026 0.94704 0.96578 1.48549 1.30307 1.45037 1.11575 1.20439 0.83468 0.78111 0.85923 1.90689 1.70991 1.63667 1.16481 1.21717 0.95540 0.99780 0.99862 1.22340 0.95765 0.94645 0.98540 1.22992 0.96334 0.95503 1.02396 1.22838 0.96923 0.97835 1.00436 1.22980 0.97212 0.96888 1.00471 1.22945 0.98156 1.02016 0.80827 1.22019 0.88721 0.88117 0.98006 0.86745 1.45968 1.47103 1.33102 1.11904 1.20342 0.82068 0.84100 0.81345 1.90704 1.42111 1.60360 1.45733 1.23538 1.01387 0.97742 1.07844 1.85361 1.59381 1.39485 0.98877 1.22825 1.29812 1.16962 0.98938 0.90991 1.24983 0.96190 0.97659 0.94657 1.70002 1.39940 1.39871 1.00467 0.86231 0.80570 0.81324 0.77434 1.19921 1.20784 1.19920 0.92008 0.91474 0.92128 0.91252 0.91307 0.88856 0.88617 0.88465 0.91316 0.90185 0.91402 0.90332 0.89888 0.91502 0.90150 0.89638 0.76571 0.89296 0.89202 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.80 37.16 0.33 -0.66 16 2 C -0.11 -0.80 3.42 -88.79 -0.30 -1.11 16 3 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 4 C 0.11 0.96 6.45 -3.06 -0.02 0.94 16 5 N -0.62 -6.20 3.33 -170.38 -0.57 -6.76 16 6 C 0.53 6.19 7.85 -10.98 -0.09 6.11 16 7 O -0.54 -8.06 16.12 5.56 0.09 -7.97 16 8 C -0.13 -1.20 4.53 -27.88 -0.13 -1.33 16 9 C -0.09 -0.89 3.11 -89.80 -0.28 -1.17 16 10 C -0.13 -1.33 7.65 -25.77 -0.20 -1.52 16 11 C -0.14 -1.19 8.09 -25.78 -0.21 -1.40 16 12 C -0.14 -1.10 7.64 -25.92 -0.20 -1.30 16 13 C 0.08 0.78 6.41 -2.41 -0.02 0.77 16 14 C 0.14 1.34 3.18 -65.66 -0.21 1.13 16 15 H 0.11 1.23 7.54 -51.93 -0.39 0.84 16 16 N -0.73 -8.58 4.52 -51.61 -0.23 -8.82 16 17 C 0.53 9.05 7.85 -10.98 -0.09 8.96 16 18 O -0.52 -10.57 15.50 5.56 0.09 -10.48 16 19 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 20 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 21 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 25 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 6.34 -51.92 -0.33 0.12 16 32 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.89 7.58 -51.93 -0.39 0.49 16 36 H 0.10 1.02 7.73 -51.93 -0.40 0.62 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.90 7.48 -51.93 -0.39 0.51 16 45 H 0.40 4.08 7.13 -40.82 -0.29 3.78 16 46 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 47 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -34.38 401.71 -10.10 -44.49 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.05 Total: 2.16 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.98 Total: -6.04 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.07 Total: -40.60 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.18 Total: -18.45 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.38 -10.10 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.107 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds