Wall clock time and date at job start Sat Apr 11 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.77420 * 2 1 4 4 C 1.54319 * 110.71786 * 123.23498 * 2 1 3 5 5 N 1.47029 * 107.26737 * 140.55796 * 4 2 1 6 6 C 1.34778 * 125.64742 * 181.01998 * 5 4 2 7 7 O 1.21278 * 119.99842 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99651 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.46728 * 180.02562 * 8 6 5 10 10 C 1.53786 * 113.61503 * 85.86370 * 9 8 6 11 11 C 1.54049 * 86.98426 * 140.01654 * 10 9 8 12 12 C 1.53781 * 113.61337 * 183.47164 * 9 8 6 13 13 C 1.47428 * 108.70422 * 1.28795 * 5 4 2 14 14 C 1.55135 * 104.72072 * 335.55375 * 13 5 4 15 15 H 1.08995 * 110.94112 * 155.28780 * 14 13 5 16 16 N 1.46500 * 111.18889 * 279.19263 * 14 13 5 17 17 C 1.34780 * 119.99698 * 267.18668 * 16 14 13 18 18 O 1.21277 * 120.00421 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99670 * 180.02562 * 17 16 14 20 20 S 1.81004 * 109.46883 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00082 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99974 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00108 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99637 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99970 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46878 * 60.00878 * 25 23 21 27 27 H 1.48499 * 109.47109 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47517 * 300.00834 * 25 23 21 29 29 H 1.09001 * 109.47492 * 298.21282 * 1 2 3 30 30 H 1.08996 * 109.47054 * 58.21883 * 1 2 3 31 31 H 1.09008 * 109.46959 * 178.21541 * 1 2 3 32 32 H 1.09001 * 109.88650 * 21.14981 * 4 2 1 33 33 H 1.08996 * 109.88483 * 259.97292 * 4 2 1 34 34 H 1.09000 * 109.47223 * 60.00290 * 8 6 5 35 35 H 1.08997 * 109.47305 * 299.99950 * 8 6 5 36 36 H 1.09002 * 112.85017 * 314.66753 * 9 8 6 37 37 H 1.08992 * 113.61675 * 254.61398 * 10 9 8 38 38 H 1.09000 * 113.60973 * 25.51686 * 10 9 8 39 39 H 1.09005 * 113.62125 * 220.02158 * 11 10 9 40 40 H 1.09003 * 113.61268 * 89.11946 * 11 10 9 41 41 H 1.08999 * 113.61567 * 334.48261 * 12 9 8 42 42 H 1.09000 * 113.61379 * 105.30384 * 12 9 8 43 43 H 1.08997 * 110.36570 * 94.47868 * 13 5 4 44 44 H 1.08996 * 110.36645 * 216.80760 * 13 5 4 45 45 H 0.96996 * 120.00283 * 87.18889 * 16 14 13 46 46 H 1.08998 * 109.47225 * 299.99731 * 19 17 16 47 47 H 1.08997 * 109.47540 * 59.99982 * 19 17 16 48 48 H 0.97002 * 119.99787 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5507 0.7390 6 6 3.9924 -2.3834 1.4898 7 8 3.7193 -2.5562 2.6588 8 6 5.1679 -3.0999 0.8767 9 6 5.8399 -3.9761 1.9358 10 6 5.2044 -5.3695 2.0763 11 6 6.6360 -5.9178 2.2276 12 6 7.1066 -4.6884 1.4327 13 6 3.4666 -1.2455 -0.6861 14 6 2.0790 -0.7954 -1.2138 15 1 2.1843 -0.1519 -2.0872 16 7 1.2272 -1.9488 -1.5144 17 6 1.2026 -2.4618 -2.7605 18 8 1.8860 -1.9690 -3.6328 19 6 0.3260 -3.6479 -3.0698 20 16 0.5117 -4.0969 -4.8134 21 6 -0.5899 -5.4697 -4.8949 22 1 -1.1283 -5.7830 -4.0127 23 6 -0.7664 -6.1477 -6.0931 24 7 -0.1105 -5.7654 -7.1684 25 14 -1.9337 -7.6035 -6.1793 26 1 -3.3032 -7.1622 -5.8117 27 1 -1.9431 -8.1494 -7.5603 28 1 -1.4826 -8.6564 -5.2343 29 1 -0.3634 0.4858 0.9056 30 1 -0.3633 0.5412 -0.8735 31 1 -0.3633 -1.0273 -0.0320 32 1 1.3130 -1.4758 1.5775 33 1 2.3740 -0.1023 1.9977 34 1 5.8840 -2.3686 0.5020 35 1 4.8231 -3.7256 0.0535 36 1 5.9771 -3.4609 2.8865 37 1 4.5948 -5.4829 2.9726 38 1 4.6990 -5.7118 1.1733 39 1 6.7992 -6.8622 1.7083 40 1 6.9909 -5.9334 3.2581 41 1 7.1203 -4.8449 0.3541 42 1 8.0317 -4.2515 1.8087 43 1 4.1947 -0.4414 -0.7929 44 1 3.8032 -2.1361 -1.2168 45 1 0.6809 -2.3432 -0.8167 46 1 0.6204 -4.4904 -2.4440 47 1 -0.7146 -3.3928 -2.8696 48 1 -0.2336 -6.2395 -8.0057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071860709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:01 Heat of formation + Delta-G solvation = -82.044748 kcal Electronic energy + Delta-G solvation = -27444.624797 eV Core-core repulsion = 23625.024588 eV Total energy + Delta-G solvation = -3819.600209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67265 -40.60133 -39.48408 -38.44355 -35.13459 -34.58159 -33.61847 -31.48435 -31.25027 -29.31884 -27.64440 -27.48512 -26.48621 -24.70122 -23.73815 -22.13202 -21.01355 -20.40652 -20.14813 -19.85316 -18.23378 -17.84791 -17.60784 -17.04813 -16.87546 -16.62984 -16.42882 -15.93933 -15.73868 -15.45899 -15.34119 -14.91093 -14.60963 -14.46043 -14.29449 -13.83773 -13.64667 -13.54766 -13.46630 -13.33267 -13.17661 -13.14010 -12.87615 -12.76812 -12.64746 -12.39604 -12.34193 -11.95533 -11.80374 -11.68484 -11.54915 -11.28473 -11.13051 -11.10467 -10.95267 -10.82868 -10.28721 -10.27398 -9.62976 -8.64990 -8.34721 -6.11774 1.26835 1.43142 1.46326 1.55980 1.57619 1.61233 1.93609 2.23632 2.28942 2.99472 3.23268 3.31527 3.47127 3.58509 3.70916 3.76749 3.83954 3.94984 3.95784 4.02474 4.17001 4.28880 4.33889 4.41966 4.48311 4.50594 4.51323 4.60207 4.64591 4.71220 4.75728 4.79361 4.84703 4.87903 4.98725 5.03637 5.07926 5.10009 5.12667 5.25799 5.36137 5.37286 5.41797 5.48880 5.60651 6.19503 6.41787 6.44647 7.07042 7.11279 7.21449 8.73991 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.002864 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.872363 B = 9774.723039 C =11763.523572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.123 0.877 4 C 0.106 3.894 5 N -0.617 5.617 6 C 0.525 3.475 7 O -0.579 6.579 8 C -0.125 4.125 9 C -0.095 4.095 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.129 4.129 13 C 0.088 3.912 14 C 0.131 3.869 15 H 0.110 0.890 16 N -0.703 5.703 17 C 0.542 3.458 18 O -0.555 6.555 19 C -0.134 4.134 20 S -0.140 6.140 21 C -0.550 4.550 22 H 0.080 0.920 23 C 0.016 3.984 24 N -0.909 5.909 25 Si 0.994 3.006 26 H -0.263 1.263 27 H -0.278 1.278 28 H -0.264 1.264 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.410 0.590 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.737 9.930 20.050 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.141 0.859 4 C -0.016 4.016 5 N -0.351 5.351 6 C 0.316 3.684 7 O -0.460 6.460 8 C -0.165 4.165 9 C -0.114 4.114 10 C -0.180 4.180 11 C -0.177 4.177 12 C -0.166 4.166 13 C -0.036 4.036 14 C 0.026 3.974 15 H 0.128 0.872 16 N -0.357 5.357 17 C 0.328 3.672 18 O -0.432 6.432 19 C -0.285 4.285 20 S 0.087 5.913 21 C -0.698 4.698 22 H 0.098 0.902 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.816 3.184 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.247 0.753 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.809 10.589 19.099 23.939 hybrid contribution -1.738 -1.660 0.912 2.570 sum 8.071 8.929 20.011 23.352 Atomic orbital electron populations 1.21727 0.92613 1.02408 1.03236 1.22528 0.97532 1.00080 0.90961 0.85918 1.22135 0.87479 0.94677 0.97345 1.48595 1.30271 1.44494 1.11744 1.20833 0.83939 0.78069 0.85558 1.90670 1.72126 1.65041 1.18130 1.21736 0.95138 1.00033 0.99571 1.22303 0.96640 0.94271 0.98200 1.23018 0.97096 0.96486 1.01437 1.22850 0.95580 0.98280 1.01003 1.22947 0.96892 0.96108 1.00699 1.22977 0.98213 1.02370 0.80001 1.22230 0.88951 0.87300 0.98960 0.87189 1.45724 1.46677 1.33024 1.10226 1.19902 0.81398 0.83476 0.82471 1.90697 1.43758 1.61456 1.47310 1.23389 1.03165 0.99413 1.02515 1.85464 1.59983 1.40042 1.05800 1.23175 1.29865 1.17216 0.99506 0.90208 1.26062 0.97913 1.00769 0.94132 1.70159 1.41735 1.41498 1.01167 0.85064 0.78296 0.77333 0.77701 1.18739 1.20323 1.18841 0.90474 0.91749 0.92720 0.91928 0.90826 0.86839 0.88529 0.89715 0.92884 0.90658 0.90905 0.89784 0.89371 0.90310 0.87609 0.90833 0.75300 0.87922 0.87493 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.80 71.98 0.63 -0.98 16 2 C -0.09 -1.07 3.42 -9.61 -0.03 -1.11 16 3 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.11 1.63 6.45 86.73 0.56 2.19 16 5 N -0.62 -11.31 3.33 -811.34 -2.70 -14.00 16 6 C 0.53 11.81 7.85 87.66 0.69 12.50 16 7 O -0.58 -17.22 16.12 -3.02 -0.05 -17.27 16 8 C -0.13 -2.20 4.53 29.85 0.14 -2.06 16 9 C -0.10 -1.74 3.11 -10.26 -0.03 -1.78 16 10 C -0.14 -2.82 7.65 31.21 0.24 -2.58 16 11 C -0.14 -2.20 8.09 31.21 0.25 -1.95 16 12 C -0.13 -1.87 7.64 31.12 0.24 -1.63 16 13 C 0.09 1.44 6.41 86.93 0.56 2.00 16 14 C 0.13 2.29 3.18 46.46 0.15 2.43 16 15 H 0.11 2.15 7.54 -2.39 -0.02 2.14 16 16 N -0.70 -15.49 4.52 -435.60 -1.97 -17.46 16 17 C 0.54 17.94 7.85 87.66 0.69 18.63 16 18 O -0.55 -22.85 15.50 -3.02 -0.05 -22.90 16 19 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 20 S -0.14 -7.50 20.57 -56.49 -1.16 -8.66 16 21 C -0.55 -30.89 9.50 67.96 0.65 -30.24 16 22 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 23 C 0.02 0.92 5.49 84.86 0.47 1.38 16 24 N -0.91 -54.93 13.22 21.65 0.29 -54.64 16 25 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.68 6.34 -2.38 -0.02 0.67 16 32 H 0.06 1.07 7.82 -2.39 -0.02 1.05 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 1.70 7.58 -2.39 -0.02 1.68 16 36 H 0.08 1.78 7.73 -2.39 -0.02 1.76 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.52 7.92 -2.39 -0.02 1.51 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.44 7.48 -2.39 -0.02 1.42 16 45 H 0.41 7.54 7.13 -92.71 -0.66 6.88 16 46 H 0.10 3.59 8.14 -2.40 -0.02 3.57 16 47 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 48 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -76.53 401.71 2.30 -74.23 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.29 Total: 23.39 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.62 Total: -7.80 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -4.38 Total: -86.10 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.10 Total: -40.16 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -7.50 SS G_CDS: -1.16 Total: -8.66 kcal Total: -76.53 2.30 -74.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.817 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds