Wall clock time and date at job start Sat Apr 11 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.54909 * 111.00603 * 236.11615 * 2 1 3 5 5 N 1.47523 * 104.78433 * 204.90137 * 4 2 1 6 6 C 1.34778 * 125.63816 * 204.08585 * 5 4 2 7 7 O 1.21278 * 119.99645 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99956 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.47062 * 179.97438 * 8 6 5 10 10 C 1.53777 * 113.61756 * 272.50157 * 9 8 6 11 11 C 1.53782 * 87.07973 * 220.01820 * 10 9 8 12 12 C 1.53778 * 113.61232 * 174.99797 * 9 8 6 13 13 C 1.47022 * 108.71559 * 24.12363 * 5 4 2 14 14 C 1.54330 * 107.27093 * 358.93837 * 13 5 4 15 15 H 1.08994 * 110.87507 * 219.37505 * 14 13 5 16 16 N 1.46505 * 110.71909 * 96.17125 * 14 13 5 17 17 C 1.34776 * 120.00040 * 91.47843 * 16 14 13 18 18 O 1.21281 * 120.00060 * 359.97438 * 17 16 14 19 19 C 1.50695 * 120.00058 * 180.02562 * 17 16 14 20 20 S 1.80997 * 109.47275 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00132 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00440 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00071 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00224 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46937 * 59.99446 * 25 23 21 27 27 H 1.48496 * 109.47129 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46740 * 299.99617 * 25 23 21 29 29 H 1.08994 * 109.46941 * 299.30333 * 1 2 3 30 30 H 1.09004 * 109.46932 * 59.30168 * 1 2 3 31 31 H 1.09002 * 109.47107 * 179.29457 * 1 2 3 32 32 H 1.09001 * 110.36668 * 323.71926 * 4 2 1 33 33 H 1.09004 * 110.36307 * 86.04054 * 4 2 1 34 34 H 1.08997 * 109.47291 * 300.00134 * 8 6 5 35 35 H 1.09003 * 109.47355 * 60.00491 * 8 6 5 36 36 H 1.09005 * 112.84477 * 43.80772 * 9 8 6 37 37 H 1.09008 * 113.61201 * 334.56321 * 10 9 8 38 38 H 1.08992 * 113.61670 * 105.46899 * 10 9 8 39 39 H 1.08999 * 113.61413 * 270.87938 * 11 10 9 40 40 H 1.09000 * 113.61499 * 139.98250 * 11 10 9 41 41 H 1.08999 * 113.61478 * 254.53065 * 12 9 8 42 42 H 1.08995 * 113.61438 * 25.44166 * 12 9 8 43 43 H 1.08998 * 109.88478 * 239.52488 * 13 5 4 44 44 H 1.08997 * 109.88284 * 118.35719 * 13 5 4 45 45 H 0.97006 * 119.99939 * 271.48161 * 16 14 13 46 46 H 1.09006 * 109.47026 * 300.00142 * 19 17 16 47 47 H 1.09003 * 109.47570 * 59.99810 * 19 17 16 48 48 H 0.96993 * 120.00307 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4491 -1.5603 -1.5927 7 8 4.3027 -1.4988 -2.7950 8 6 5.7725 -1.9924 -1.0158 9 6 6.7507 -2.2937 -2.1532 10 6 6.6704 -3.7405 -2.6678 11 6 8.2048 -3.7081 -2.7643 12 6 8.1723 -2.6272 -1.6709 13 6 3.4679 -1.2731 0.6969 14 6 2.0861 -0.8074 1.2026 15 1 2.1885 -0.1700 2.0808 16 7 1.2272 -1.9574 1.4964 17 6 1.2063 -2.4833 2.7372 18 8 1.8989 -2.0049 3.6103 19 6 0.3233 -3.6665 3.0392 20 16 0.5171 -4.1360 4.7765 21 6 -0.5949 -5.5008 4.8504 22 1 -1.1418 -5.8002 3.9686 23 6 -0.7688 -6.1904 6.0424 24 7 -0.1027 -5.8253 7.1173 25 14 -1.9472 -7.6378 6.1206 26 1 -1.5107 -8.6838 5.1611 27 1 -1.9516 -8.1987 7.4956 28 1 -3.3155 -7.1817 5.7671 29 1 -0.3633 0.5030 0.8961 30 1 -0.3633 0.5247 -0.8837 31 1 -0.3633 -1.0276 -0.0127 32 1 1.4523 -1.6703 -1.4026 33 1 2.1554 -0.1714 -2.0839 34 1 6.1749 -1.1944 -0.3919 35 1 5.6305 -2.8890 -0.4123 36 1 6.7226 -1.5450 -2.9449 37 1 6.2943 -4.4470 -1.9277 38 1 6.1740 -3.8335 -3.6337 39 1 8.5744 -3.3473 -3.7241 40 1 8.6820 -4.6355 -2.4475 41 1 8.8883 -1.8214 -1.8321 42 1 8.2067 -3.0292 -0.6584 43 1 4.2425 -0.5982 1.0611 44 1 3.6658 -2.2881 1.0411 45 1 0.6736 -2.3403 0.7979 46 1 -0.7167 -3.4019 2.8478 47 1 0.6081 -4.5044 2.4029 48 1 -0.2240 -6.3075 7.9502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071860710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:05 Heat of formation + Delta-G solvation = -81.688061 kcal Electronic energy + Delta-G solvation = -27118.762013 eV Core-core repulsion = 23299.177270 eV Total energy + Delta-G solvation = -3819.584742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67642 -40.62492 -39.49030 -38.45410 -35.19701 -34.57296 -33.57724 -31.47625 -31.26624 -29.28558 -27.63396 -27.50868 -26.47863 -24.72826 -23.70150 -22.18485 -21.05538 -20.38379 -20.14170 -19.85971 -18.27197 -17.79663 -17.55548 -17.00559 -16.86784 -16.69572 -16.40541 -15.95732 -15.77394 -15.45647 -15.36417 -14.84568 -14.66248 -14.52190 -14.32824 -13.86588 -13.58713 -13.51007 -13.44786 -13.32174 -13.16688 -13.14043 -12.86771 -12.78730 -12.64158 -12.40917 -12.37393 -11.97400 -11.78410 -11.67958 -11.55192 -11.27645 -11.12232 -11.09339 -10.95549 -10.84106 -10.26579 -10.20245 -9.72446 -8.64184 -8.33870 -6.10878 1.27588 1.43808 1.47129 1.56369 1.58084 1.60921 1.91475 2.24437 2.29856 3.00294 3.19792 3.32905 3.48459 3.56949 3.71017 3.77383 3.83146 3.95612 3.97485 4.01985 4.19433 4.26470 4.32736 4.42478 4.45113 4.50419 4.53088 4.58536 4.64374 4.72071 4.76604 4.79584 4.85221 4.88741 4.99242 5.03562 5.08463 5.11641 5.13474 5.19590 5.36905 5.38552 5.42746 5.47417 5.61361 6.20406 6.41055 6.46359 7.07886 7.09711 7.22784 8.74809 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.002376 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.026604 B =11784.159698 C =13255.524122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.113 0.887 4 C 0.104 3.896 5 N -0.618 5.618 6 C 0.526 3.474 7 O -0.579 6.579 8 C -0.125 4.125 9 C -0.098 4.098 10 C -0.142 4.142 11 C -0.140 4.140 12 C -0.130 4.130 13 C 0.091 3.909 14 C 0.136 3.864 15 H 0.107 0.893 16 N -0.704 5.704 17 C 0.541 3.459 18 O -0.556 6.556 19 C -0.132 4.132 20 S -0.144 6.144 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.264 1.264 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.412 0.588 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 10.853 -20.212 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.132 0.868 4 C -0.018 4.018 5 N -0.352 5.352 6 C 0.316 3.684 7 O -0.460 6.460 8 C -0.165 4.165 9 C -0.116 4.116 10 C -0.180 4.180 11 C -0.177 4.177 12 C -0.167 4.167 13 C -0.033 4.033 14 C 0.030 3.970 15 H 0.125 0.875 16 N -0.358 5.358 17 C 0.327 3.673 18 O -0.433 6.433 19 C -0.284 4.284 20 S 0.083 5.917 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.817 3.183 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.250 0.750 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.271 11.633 -19.277 24.747 hybrid contribution -1.697 -1.646 -0.896 2.528 sum 8.575 9.987 -20.172 24.087 Atomic orbital electron populations 1.21671 0.92130 1.02801 1.03220 1.22633 0.97682 0.99676 0.91305 0.86842 1.22441 0.82720 0.98593 0.98080 1.48630 1.12608 1.66772 1.07194 1.20878 0.85811 0.75897 0.85774 1.90671 1.83889 1.55199 1.16201 1.21751 0.90980 1.04105 0.99637 1.22320 0.94851 0.97467 0.97009 1.22986 0.97307 0.96617 1.01045 1.22802 0.95531 0.99792 0.99609 1.22961 0.95311 0.99023 0.99394 1.22595 0.99010 1.02580 0.79120 1.21985 0.88439 0.87330 0.99211 0.87533 1.45789 1.46179 1.33105 1.10774 1.19937 0.81510 0.83402 0.82416 1.90702 1.43500 1.62035 1.47107 1.23385 1.03168 0.99383 1.02436 1.85502 1.59206 1.40293 1.06685 1.23171 1.29122 1.17385 0.99864 0.90076 1.26079 0.98027 1.00756 0.94161 1.70160 1.41590 1.41450 1.01439 0.85056 0.78285 0.77328 0.77667 1.18823 1.20443 1.18698 0.91839 0.90456 0.92073 0.91168 0.90399 0.86896 0.88094 0.89882 0.90248 0.92942 0.89980 0.90711 0.90534 0.89128 0.88480 0.91539 0.74984 0.87287 0.87643 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.91 71.98 0.64 -0.89 16 2 C -0.09 -1.15 3.51 -9.40 -0.03 -1.19 16 3 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.10 1.62 6.34 86.84 0.55 2.17 16 5 N -0.62 -11.33 3.33 -811.53 -2.70 -14.04 16 6 C 0.53 11.44 7.85 87.66 0.69 12.12 16 7 O -0.58 -16.78 16.01 -3.02 -0.05 -16.82 16 8 C -0.13 -2.03 4.73 29.85 0.14 -1.89 16 9 C -0.10 -1.65 3.15 -10.27 -0.03 -1.68 16 10 C -0.14 -2.50 7.63 31.12 0.24 -2.26 16 11 C -0.14 -1.94 8.08 31.12 0.25 -1.69 16 12 C -0.13 -1.67 7.64 31.12 0.24 -1.43 16 13 C 0.09 1.56 6.23 86.73 0.54 2.10 16 14 C 0.14 2.40 3.10 46.18 0.14 2.54 16 15 H 0.11 2.16 7.55 -2.39 -0.02 2.14 16 16 N -0.70 -14.89 4.44 -436.91 -1.94 -16.83 16 17 C 0.54 17.60 7.85 87.66 0.69 18.28 16 18 O -0.56 -22.81 15.51 -3.03 -0.05 -22.86 16 19 C -0.13 -4.88 6.16 71.23 0.44 -4.44 16 20 S -0.14 -7.66 20.57 -56.49 -1.16 -8.82 16 21 C -0.55 -30.48 9.50 67.96 0.65 -29.84 16 22 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 23 C 0.01 0.82 5.49 84.86 0.47 1.29 16 24 N -0.91 -54.85 13.22 21.65 0.29 -54.56 16 25 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.66 6.40 -2.39 -0.02 0.65 16 32 H 0.07 1.08 8.03 -2.39 -0.02 1.06 16 33 H 0.08 1.31 8.04 -2.38 -0.02 1.29 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.53 7.84 -2.39 -0.02 1.51 16 36 H 0.08 1.67 7.67 -2.38 -0.02 1.66 16 37 H 0.08 1.36 7.90 -2.38 -0.02 1.35 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.04 8.10 -2.39 -0.02 1.03 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 45 H 0.41 6.76 7.08 -92.70 -0.66 6.10 16 46 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 47 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 48 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -76.39 402.43 2.31 -74.08 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.29 Total: 21.81 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.60 Total: -6.80 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -4.35 Total: -85.43 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.10 Total: -39.68 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Total: -76.39 2.31 -74.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.613 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds