Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00204 * 2 1 4 4 C 1.50697 * 119.99884 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47466 * 94.99937 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.47427 * 125.64341 * 180.02562 * 8 6 5 10 10 C 1.54913 * 104.82914 * 204.09404 * 9 8 6 11 11 H 1.09003 * 111.00135 * 81.06718 * 10 9 8 12 12 C 1.52997 * 111.00255 * 204.91854 * 10 9 8 13 13 C 1.55153 * 101.58063 * 322.99271 * 10 9 8 14 14 H 1.09002 * 110.72215 * 154.04367 * 13 10 9 15 15 N 1.46501 * 110.72228 * 277.13723 * 13 10 9 16 16 C 1.34778 * 119.99895 * 205.00166 * 15 13 10 17 17 O 1.21278 * 120.00086 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99727 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46964 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99642 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00771 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99666 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00304 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47436 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.46962 * 209.99994 * 24 22 20 27 27 H 1.48501 * 109.47074 * 329.99411 * 24 22 20 28 28 C 1.47015 * 125.64739 * 359.69531 * 8 6 5 29 29 H 1.08007 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00144 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47438 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47082 * 300.00227 * 3 2 1 33 33 H 1.09009 * 109.46806 * 59.99795 * 3 2 1 34 34 H 1.09002 * 109.47120 * 334.99690 * 4 2 1 35 35 H 1.08998 * 109.46862 * 215.00492 * 4 2 1 36 36 H 1.09002 * 109.47153 * 59.99773 * 5 4 2 37 37 H 1.09001 * 109.46832 * 299.99964 * 5 4 2 38 38 H 1.09000 * 110.36996 * 322.93056 * 9 8 6 39 39 H 1.09001 * 110.36275 * 85.25994 * 9 8 6 40 40 H 1.08994 * 109.47172 * 58.54842 * 12 10 9 41 41 H 1.09006 * 109.46701 * 178.54858 * 12 10 9 42 42 H 1.09001 * 109.47192 * 298.54633 * 12 10 9 43 43 H 0.97003 * 119.99811 * 24.99945 * 15 13 10 44 44 H 1.09005 * 109.46973 * 300.00235 * 18 16 15 45 45 H 1.08999 * 109.47340 * 59.99732 * 18 16 15 46 46 H 0.97002 * 120.00645 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.88560 * 298.38860 * 28 8 6 48 48 H 1.08996 * 109.88501 * 59.56171 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 6 3.1814 -2.9882 -1.4382 7 8 3.4052 -3.5595 -0.3921 8 7 3.6061 -3.5206 -2.6012 9 6 4.3505 -4.7848 -2.7462 10 6 5.1132 -4.6443 -4.0872 11 1 6.0248 -4.0606 -3.9589 12 6 5.4233 -6.0167 -4.6882 13 6 4.0797 -3.8781 -4.9545 14 1 4.5802 -3.3075 -5.7368 15 7 3.1027 -4.8028 -5.5346 16 6 2.4561 -4.4745 -6.6706 17 8 2.6833 -3.4138 -7.2129 18 6 1.4506 -5.4256 -7.2671 19 16 0.7606 -4.7049 -8.7772 20 6 -0.3507 -5.9886 -9.2486 21 1 -0.4329 -6.8804 -8.6450 22 6 -1.1197 -5.8540 -10.3963 23 7 -1.0192 -4.7674 -11.1322 24 14 -2.2983 -7.2145 -10.8956 25 1 -3.6260 -6.9712 -10.2768 26 1 -2.4369 -7.2314 -12.3741 27 1 -1.7688 -8.5226 -10.4331 28 6 3.3977 -2.9404 -3.9359 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 3.1351 1.1059 -0.0005 32 1 1.8002 1.8767 -0.8900 33 1 1.8002 1.8767 0.8901 34 1 1.4385 -2.0856 0.4334 35 1 2.9741 -1.1991 0.5890 36 1 3.0523 -0.9028 -1.8717 37 1 1.5166 -1.7893 -2.0272 38 1 5.0526 -4.9084 -1.9217 39 1 3.6613 -5.6282 -2.7884 40 1 4.4933 -6.5625 -4.8465 41 1 5.9362 -5.8884 -5.6414 42 1 6.0615 -6.5768 -4.0047 43 1 2.9213 -5.6514 -5.1011 44 1 1.9407 -6.3694 -7.5063 45 1 0.6493 -5.6039 -6.5500 46 1 -1.5568 -4.6731 -11.9341 47 1 2.3307 -2.8723 -4.1481 48 1 3.8514 -1.9505 -3.9847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072215246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -66.440552 kcal Electronic energy + Delta-G solvation = -26885.054170 eV Core-core repulsion = 23066.130610 eV Total energy + Delta-G solvation = -3818.923561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76145 -39.35644 -37.84684 -36.59104 -34.18802 -32.71305 -32.46513 -31.39770 -30.09769 -28.17165 -27.63016 -27.11346 -25.52290 -24.52827 -23.04794 -21.07713 -20.19307 -19.36262 -18.72866 -17.97587 -17.22889 -16.85442 -16.35606 -16.13361 -15.62637 -15.07589 -14.99329 -14.88300 -14.83492 -14.26784 -14.07327 -13.86548 -13.74604 -13.55148 -13.28570 -13.00787 -12.79505 -12.63097 -12.60514 -12.49826 -12.37266 -12.02598 -12.01076 -11.66932 -11.33367 -11.28325 -11.17945 -11.09629 -11.06515 -11.02796 -10.78932 -10.13609 -9.85766 -9.53317 -9.30376 -9.14646 -9.08710 -8.89368 -8.29364 -6.54820 -6.25639 -3.96532 1.90048 2.39498 2.69893 2.93660 2.95083 3.19820 3.24962 3.28560 3.61894 3.92222 4.16662 4.25789 4.33698 4.50504 4.58048 4.71645 4.82127 4.88711 4.92825 5.01403 5.08053 5.09898 5.10317 5.22188 5.23797 5.29917 5.34169 5.39470 5.45367 5.48090 5.58544 5.59578 5.63697 5.69016 5.71094 5.76615 5.82003 5.84085 5.91774 5.99421 6.07697 6.34795 6.49098 6.57769 7.20855 7.55033 7.56840 7.90467 8.31330 8.48054 9.19977 10.81737 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.002364 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.952943 B =11843.279526 C =13422.291546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.131 4.131 6 C 0.530 3.470 7 O -0.544 6.544 8 N -0.619 5.619 9 C 0.108 3.892 10 C -0.112 4.112 11 H 0.098 0.902 12 C -0.141 4.141 13 C 0.140 3.860 14 H 0.114 0.886 15 N -0.729 5.729 16 C 0.535 3.465 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.087 3.913 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.399 0.601 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.079 0.921 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.230 4.721 20.530 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.128 4.128 3 C -0.178 4.178 4 C -0.107 4.107 5 C -0.171 4.171 6 C 0.320 3.680 7 O -0.422 6.422 8 N -0.354 5.354 9 C -0.015 4.015 10 C -0.131 4.131 11 H 0.116 0.884 12 C -0.199 4.199 13 C 0.033 3.967 14 H 0.132 0.868 15 N -0.385 5.385 16 C 0.321 3.679 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.038 4.038 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.234 0.766 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.633 6.331 20.080 24.055 hybrid contribution -1.250 -2.465 0.376 2.790 sum 10.383 3.866 20.456 23.264 Atomic orbital electron populations 1.23722 0.95299 1.02035 1.01980 1.21757 0.95433 0.95610 1.00041 1.20869 1.00072 0.94697 1.02121 1.20439 1.00784 0.94411 0.95047 1.21630 1.01302 0.94671 0.99482 1.20425 0.78891 0.86801 0.81930 1.90703 1.57486 1.63250 1.30720 1.48533 1.56491 1.23947 1.06385 1.22327 0.94999 0.86523 0.97642 1.22687 0.98148 0.98342 0.93946 0.88373 1.21659 1.02152 0.94786 1.01260 1.21846 0.89032 0.90845 0.94932 0.86825 1.46083 1.43235 1.22142 1.27012 1.20352 0.80789 0.87405 0.79318 1.90708 1.63645 1.24135 1.60322 1.23538 0.99902 1.01792 1.05257 1.85382 1.50256 1.26870 1.20694 1.22860 1.26992 1.05439 1.13139 0.90928 1.24991 0.96797 0.96481 0.95288 1.70007 1.39131 1.26087 1.15033 0.86171 0.80467 0.81072 0.77815 1.20254 1.20729 1.19693 1.22651 1.02095 0.97568 0.81442 0.88405 0.88374 0.91970 0.91447 0.91590 0.90600 0.90539 0.88731 0.88631 0.90096 0.91328 0.92042 0.91441 0.91932 0.76555 0.89163 0.89242 0.92147 0.90262 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 13.93 29.01 0.40 -1.14 16 2 C -0.13 -1.04 5.31 -101.07 -0.54 -1.57 16 3 C -0.12 -0.80 10.05 36.01 0.36 -0.44 16 4 C -0.07 -0.62 4.58 -27.89 -0.13 -0.74 16 5 C -0.13 -1.15 4.87 -27.88 -0.14 -1.28 16 6 C 0.53 5.95 7.85 -10.98 -0.09 5.87 16 7 O -0.54 -7.88 16.24 5.56 0.09 -7.79 16 8 N -0.62 -6.10 3.33 -170.51 -0.57 -6.67 16 9 C 0.11 0.93 6.33 -2.53 -0.02 0.91 16 10 C -0.11 -0.82 3.51 -88.47 -0.31 -1.13 16 11 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 12 C -0.14 -0.95 8.98 37.16 0.33 -0.61 16 13 C 0.14 1.36 3.10 -66.09 -0.21 1.15 16 14 H 0.11 1.23 7.55 -51.93 -0.39 0.84 16 15 N -0.73 -8.37 4.40 -52.02 -0.23 -8.60 16 16 C 0.53 8.94 7.85 -10.98 -0.09 8.86 16 17 O -0.51 -10.53 15.51 5.56 0.09 -10.44 16 18 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 24 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 28 C 0.09 0.82 6.23 -3.06 -0.02 0.80 16 29 H 0.10 0.69 8.05 -52.48 -0.42 0.27 16 30 H 0.10 0.78 7.99 -52.49 -0.42 0.36 16 31 H 0.06 0.38 8.00 -51.93 -0.42 -0.03 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.08 0.75 7.94 -51.93 -0.41 0.34 16 35 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 39 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 40 H 0.06 0.42 6.27 -51.93 -0.33 0.09 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.40 3.76 7.05 -40.82 -0.29 3.47 16 44 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 45 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 410.48 15.07 6.19 6.19 Total: -1.00 -34.55 410.48 -9.06 -43.61 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.12 Total: 1.04 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.67 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.06 Total: -40.24 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.55 -9.06 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072215246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.830 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds