Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00204 * 2 1 4 4 C 1.50697 * 119.99884 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47466 * 94.99937 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.47427 * 125.64341 * 180.02562 * 8 6 5 10 10 C 1.54913 * 104.82914 * 204.09404 * 9 8 6 11 11 H 1.09003 * 111.00135 * 81.06718 * 10 9 8 12 12 C 1.52997 * 111.00255 * 204.91854 * 10 9 8 13 13 C 1.55153 * 101.58063 * 322.99271 * 10 9 8 14 14 H 1.09002 * 110.72215 * 154.04367 * 13 10 9 15 15 N 1.46501 * 110.72228 * 277.13723 * 13 10 9 16 16 C 1.34778 * 119.99895 * 205.00166 * 15 13 10 17 17 O 1.21278 * 120.00086 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99727 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46964 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99642 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00771 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99666 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00304 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47436 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.46962 * 209.99994 * 24 22 20 27 27 H 1.48501 * 109.47074 * 329.99411 * 24 22 20 28 28 C 1.47015 * 125.64739 * 359.69531 * 8 6 5 29 29 H 1.08007 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00144 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47438 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47082 * 300.00227 * 3 2 1 33 33 H 1.09009 * 109.46806 * 59.99795 * 3 2 1 34 34 H 1.09002 * 109.47120 * 334.99690 * 4 2 1 35 35 H 1.08998 * 109.46862 * 215.00492 * 4 2 1 36 36 H 1.09002 * 109.47153 * 59.99773 * 5 4 2 37 37 H 1.09001 * 109.46832 * 299.99964 * 5 4 2 38 38 H 1.09000 * 110.36996 * 322.93056 * 9 8 6 39 39 H 1.09001 * 110.36275 * 85.25994 * 9 8 6 40 40 H 1.08994 * 109.47172 * 58.54842 * 12 10 9 41 41 H 1.09006 * 109.46701 * 178.54858 * 12 10 9 42 42 H 1.09001 * 109.47192 * 298.54633 * 12 10 9 43 43 H 0.97003 * 119.99811 * 24.99945 * 15 13 10 44 44 H 1.09005 * 109.46973 * 300.00235 * 18 16 15 45 45 H 1.08999 * 109.47340 * 59.99732 * 18 16 15 46 46 H 0.97002 * 120.00645 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.88560 * 298.38860 * 28 8 6 48 48 H 1.08996 * 109.88501 * 59.56171 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 6 3.1814 -2.9882 -1.4382 7 8 3.4052 -3.5595 -0.3921 8 7 3.6061 -3.5206 -2.6012 9 6 4.3505 -4.7848 -2.7462 10 6 5.1132 -4.6443 -4.0872 11 1 6.0248 -4.0606 -3.9589 12 6 5.4233 -6.0167 -4.6882 13 6 4.0797 -3.8781 -4.9545 14 1 4.5802 -3.3075 -5.7368 15 7 3.1027 -4.8028 -5.5346 16 6 2.4561 -4.4745 -6.6706 17 8 2.6833 -3.4138 -7.2129 18 6 1.4506 -5.4256 -7.2671 19 16 0.7606 -4.7049 -8.7772 20 6 -0.3507 -5.9886 -9.2486 21 1 -0.4329 -6.8804 -8.6450 22 6 -1.1197 -5.8540 -10.3963 23 7 -1.0192 -4.7674 -11.1322 24 14 -2.2983 -7.2145 -10.8956 25 1 -3.6260 -6.9712 -10.2768 26 1 -2.4369 -7.2314 -12.3741 27 1 -1.7688 -8.5226 -10.4331 28 6 3.3977 -2.9404 -3.9359 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 3.1351 1.1059 -0.0005 32 1 1.8002 1.8767 -0.8900 33 1 1.8002 1.8767 0.8901 34 1 1.4385 -2.0856 0.4334 35 1 2.9741 -1.1991 0.5890 36 1 3.0523 -0.9028 -1.8717 37 1 1.5166 -1.7893 -2.0272 38 1 5.0526 -4.9084 -1.9217 39 1 3.6613 -5.6282 -2.7884 40 1 4.4933 -6.5625 -4.8465 41 1 5.9362 -5.8884 -5.6414 42 1 6.0615 -6.5768 -4.0047 43 1 2.9213 -5.6514 -5.1011 44 1 1.9407 -6.3694 -7.5063 45 1 0.6493 -5.6039 -6.5500 46 1 -1.5568 -4.6731 -11.9341 47 1 2.3307 -2.8723 -4.1481 48 1 3.8514 -1.9505 -3.9847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072215246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -87.997208 kcal Electronic energy + Delta-G solvation = -26885.988937 eV Core-core repulsion = 23066.130610 eV Total energy + Delta-G solvation = -3819.858327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66338 -40.47392 -38.86054 -37.28436 -35.21829 -34.57613 -33.59332 -32.10078 -31.29331 -29.30333 -28.19202 -27.78019 -27.63608 -25.24889 -23.88273 -22.19345 -21.05714 -20.19647 -19.86623 -19.37627 -18.23387 -17.79340 -17.55352 -17.02259 -16.87117 -16.65783 -16.27357 -15.93000 -15.63771 -15.57851 -15.01275 -14.77677 -14.66288 -14.51040 -14.36605 -14.18049 -13.69445 -13.56015 -13.49062 -13.37311 -13.18271 -13.15082 -13.02806 -12.89267 -12.62633 -12.57229 -12.38282 -12.02017 -11.95590 -11.86465 -11.76641 -11.66584 -11.13835 -11.04801 -10.93881 -10.26369 -10.20988 -9.92893 -9.74810 -8.64321 -8.34265 -6.11107 1.26449 1.27760 1.42256 1.47281 1.52578 1.57433 1.60782 1.92539 2.24212 2.29559 3.00067 3.19075 3.32726 3.48140 3.60367 3.82562 3.92483 3.97322 4.02131 4.15390 4.20657 4.25629 4.30640 4.34104 4.45177 4.52808 4.55075 4.61311 4.66957 4.71606 4.76941 4.78452 4.84756 4.93174 5.03342 5.06781 5.09089 5.13277 5.15411 5.20582 5.38860 5.42880 5.47121 5.72978 5.95958 6.20425 6.37281 6.46035 7.04572 7.07685 7.22662 8.74672 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.002364 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.952943 B =11843.279526 C =13422.291546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.120 4.120 4 C -0.065 4.065 5 C -0.125 4.125 6 C 0.526 3.474 7 O -0.581 6.581 8 N -0.616 5.616 9 C 0.103 3.897 10 C -0.093 4.093 11 H 0.114 0.886 12 C -0.141 4.141 13 C 0.136 3.864 14 H 0.107 0.893 15 N -0.704 5.704 16 C 0.541 3.459 17 O -0.556 6.556 18 C -0.132 4.132 19 S -0.145 6.145 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.259 1.259 28 C 0.090 3.910 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.412 0.588 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.271 0.729 47 H 0.066 0.934 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 3.678 21.483 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.132 4.132 3 C -0.177 4.177 4 C -0.103 4.103 5 C -0.165 4.165 6 C 0.317 3.683 7 O -0.462 6.462 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.113 4.113 11 H 0.132 0.868 12 C -0.199 4.199 13 C 0.030 3.970 14 H 0.125 0.875 15 N -0.359 5.359 16 C 0.327 3.673 17 O -0.433 6.433 18 C -0.284 4.284 19 S 0.083 5.917 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.817 3.183 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.183 1.183 28 C -0.034 4.034 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.250 0.750 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.140 5.261 21.063 24.874 hybrid contribution -1.314 -2.151 0.193 2.528 sum 10.826 3.110 21.256 24.056 Atomic orbital electron populations 1.23833 0.95455 1.02381 1.02008 1.21844 0.95534 0.95807 1.00063 1.20891 1.00141 0.93920 1.02732 1.20368 1.00348 0.94536 0.95058 1.21630 1.01392 0.93982 0.99496 1.20812 0.78605 0.87270 0.81637 1.90685 1.59089 1.64397 1.31992 1.48573 1.55975 1.24240 1.06175 1.22448 0.95099 0.86101 0.98243 1.22633 0.97685 0.98707 0.92230 0.86768 1.21676 1.02418 0.94354 1.01418 1.21999 0.89051 0.90922 0.94996 0.87483 1.45806 1.42166 1.22821 1.25106 1.19940 0.80673 0.86324 0.80338 1.90702 1.65066 1.25645 1.61927 1.23386 1.00858 1.02376 1.01749 1.85509 1.51338 1.29089 1.25809 1.23202 1.27083 1.05644 1.13504 0.90069 1.26080 0.98667 0.99082 0.95229 1.70165 1.40416 1.28415 1.15654 0.85000 0.77888 0.77958 0.77439 1.19442 1.20328 1.18277 1.22612 1.01434 0.98349 0.80968 0.87401 0.88798 0.91529 0.90864 0.90912 0.92126 0.91044 0.86899 0.88324 0.90235 0.91070 0.92110 0.91780 0.90406 0.74953 0.87277 0.87636 0.92007 0.91538 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.06 13.93 67.78 0.94 -2.12 16 2 C -0.13 -2.02 5.31 -16.49 -0.09 -2.11 16 3 C -0.12 -1.41 10.05 71.24 0.72 -0.69 16 4 C -0.07 -1.14 4.58 29.85 0.14 -1.01 16 5 C -0.13 -2.07 4.87 29.85 0.15 -1.92 16 6 C 0.53 11.34 7.85 87.66 0.69 12.03 16 7 O -0.58 -16.68 16.24 -3.03 -0.05 -16.72 16 8 N -0.62 -11.15 3.33 -811.77 -2.70 -13.85 16 9 C 0.10 1.57 6.33 86.86 0.55 2.12 16 10 C -0.09 -1.12 3.51 -9.40 -0.03 -1.15 16 11 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 12 C -0.14 -1.50 8.98 71.98 0.65 -0.86 16 13 C 0.14 2.38 3.10 46.18 0.14 2.52 16 14 H 0.11 2.15 7.55 -2.39 -0.02 2.13 16 15 N -0.70 -14.83 4.40 -436.89 -1.92 -16.76 16 16 C 0.54 17.59 7.85 87.66 0.69 18.27 16 17 O -0.56 -22.82 15.51 -3.02 -0.05 -22.87 16 18 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 19 S -0.14 -7.70 20.57 -56.49 -1.16 -8.86 16 20 C -0.55 -30.44 9.50 67.96 0.65 -29.80 16 21 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -54.88 13.22 21.65 0.29 -54.60 16 24 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 28 C 0.09 1.55 6.23 86.74 0.54 2.09 16 29 H 0.11 1.41 8.05 -2.91 -0.02 1.39 16 30 H 0.09 1.48 7.99 -2.91 -0.02 1.46 16 31 H 0.07 0.72 8.00 -2.39 -0.02 0.70 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 1.23 7.94 -2.39 -0.02 1.21 16 35 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 39 H 0.07 1.06 8.04 -2.39 -0.02 1.04 16 40 H 0.06 0.66 6.27 -2.39 -0.01 0.64 16 41 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.41 6.69 7.05 -92.71 -0.65 6.04 16 44 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 45 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 48 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.59 410.48 3.35 -73.24 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.28 Total: 21.30 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 6.63 Total: -5.80 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -4.34 Total: -85.21 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.10 Total: -39.60 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.16 Total: -8.86 kcal Total: -76.59 3.35 -73.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072215246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.756 kcal (2) G-P(sol) polarization free energy of solvation -76.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds