Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99954 * 2 1 4 4 C 1.50707 * 120.00108 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46831 * 95.00225 * 4 2 1 6 6 C 1.50700 * 109.47054 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99842 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.47426 * 125.64619 * 179.97438 * 8 6 5 10 10 C 1.54912 * 104.83401 * 155.84073 * 9 8 6 11 11 H 1.08996 * 111.03948 * 278.92309 * 10 9 8 12 12 C 1.53001 * 111.00645 * 155.08309 * 10 9 8 13 13 C 1.55159 * 101.57828 * 37.00900 * 10 9 8 14 14 H 1.09005 * 110.72065 * 205.95948 * 13 10 9 15 15 N 1.46499 * 110.72230 * 82.86175 * 13 10 9 16 16 C 1.34778 * 120.00278 * 157.43687 * 15 13 10 17 17 O 1.21278 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00209 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99753 * 24 22 20 26 26 H 1.48497 * 109.46782 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00030 * 24 22 20 28 28 C 1.47482 * 125.59618 * 359.93723 * 8 6 5 29 29 H 1.08000 * 119.99631 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00566 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46753 * 269.99953 * 3 2 1 32 32 H 1.08998 * 109.47403 * 29.99577 * 3 2 1 33 33 H 1.08999 * 109.47510 * 150.00043 * 3 2 1 34 34 H 1.08999 * 109.46943 * 334.99896 * 4 2 1 35 35 H 1.08995 * 109.46862 * 214.99770 * 4 2 1 36 36 H 1.09002 * 109.47130 * 59.99963 * 5 4 2 37 37 H 1.09003 * 109.47047 * 299.99746 * 5 4 2 38 38 H 1.09001 * 110.36851 * 37.00636 * 9 8 6 39 39 H 1.08999 * 110.46381 * 274.72717 * 9 8 6 40 40 H 1.09004 * 109.46913 * 307.80327 * 12 10 9 41 41 H 1.08995 * 109.47253 * 67.80307 * 12 10 9 42 42 H 1.08994 * 109.46855 * 187.80698 * 12 10 9 43 43 H 0.97000 * 119.99972 * 337.44043 * 15 13 10 44 44 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 45 45 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 46 46 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 47 47 H 1.09008 * 110.03302 * 61.71318 * 28 8 6 48 48 H 1.09002 * 109.96713 * 300.40421 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3052 0.0006 5 6 2.4275 -1.6845 -1.4363 6 6 3.1804 -2.9899 -1.4358 7 8 3.4044 -3.5604 -0.3892 8 7 3.6058 -3.5229 -2.5983 9 6 4.3504 -4.7871 -2.7423 10 6 4.0578 -5.2571 -4.1891 11 1 3.0917 -5.7581 -4.2499 12 6 5.1759 -6.1635 -4.7080 13 6 4.0342 -3.9085 -4.9558 14 1 3.4163 -3.9843 -5.8507 15 7 5.3933 -3.4846 -5.3012 16 6 5.5931 -2.6272 -6.3217 17 8 4.6476 -2.2061 -6.9538 18 6 6.9913 -2.1917 -6.6773 19 16 6.9289 -1.0478 -8.0786 20 6 8.6470 -0.7097 -8.2743 21 1 9.3672 -1.1749 -7.6175 22 6 9.0755 0.1496 -9.2765 23 7 8.1978 0.7162 -10.0773 24 14 10.8976 0.5020 -9.4889 25 1 11.6173 -0.7657 -9.7714 26 1 11.0909 1.4443 -10.6202 27 1 11.4330 1.1082 -8.2435 28 6 3.4023 -2.9373 -3.9365 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 2.2451 1.6197 -1.0277 32 1 1.4744 2.0648 0.5137 33 1 3.0159 1.1748 0.5138 34 1 1.4386 -2.0853 0.4353 35 1 2.9742 -1.1986 0.5899 36 1 3.0524 -0.9043 -1.8709 37 1 1.5167 -1.7910 -2.0257 38 1 3.9899 -5.5236 -2.0240 39 1 5.4186 -4.6178 -2.6072 40 1 6.1374 -5.6679 -4.5732 41 1 5.1699 -7.1018 -4.1534 42 1 5.0171 -6.3664 -5.7670 43 1 6.1495 -3.8211 -4.7954 44 1 7.5863 -3.0644 -6.9463 45 1 7.4450 -1.6924 -5.8211 46 1 8.4972 1.3171 -10.7775 47 1 3.8923 -1.9654 -3.9972 48 1 2.3364 -2.8305 -4.1379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072215247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -67.083867 kcal Electronic energy + Delta-G solvation = -26909.389584 eV Core-core repulsion = 23090.438127 eV Total energy + Delta-G solvation = -3818.951457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73938 -39.35097 -37.83602 -36.58801 -34.17119 -32.71163 -32.46448 -31.39611 -30.10151 -28.17321 -27.60055 -27.11040 -25.52246 -24.52636 -23.05194 -21.06618 -20.19685 -19.35607 -18.73662 -17.97436 -17.23579 -16.83140 -16.36127 -16.09885 -15.63747 -15.22055 -14.96233 -14.83643 -14.59381 -14.49968 -14.06974 -13.82525 -13.73313 -13.51658 -13.23972 -13.05361 -12.77472 -12.64432 -12.59355 -12.48559 -12.36165 -12.01034 -11.97285 -11.67214 -11.35792 -11.30091 -11.17363 -11.08936 -11.06851 -11.02671 -10.79729 -10.12798 -9.86786 -9.53373 -9.32074 -9.14435 -9.08173 -8.89450 -8.29919 -6.54970 -6.25599 -3.96614 1.89659 2.40329 2.69651 2.93530 2.95086 3.20826 3.24611 3.27394 3.61740 3.91219 4.16724 4.25582 4.33736 4.49618 4.58883 4.71973 4.82138 4.89223 4.92876 5.01036 5.08683 5.09801 5.10211 5.22330 5.25806 5.29521 5.38666 5.40647 5.45378 5.48689 5.58339 5.58903 5.66870 5.69563 5.71128 5.76304 5.81832 5.83785 5.90495 5.98860 6.07522 6.34099 6.49151 6.57766 7.20835 7.54888 7.56749 7.91163 8.31071 8.48007 9.19868 10.81728 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.002406 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.426891 B =11634.339575 C =13315.536517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.131 4.131 6 C 0.530 3.470 7 O -0.544 6.544 8 N -0.619 5.619 9 C 0.108 3.892 10 C -0.111 4.111 11 H 0.098 0.902 12 C -0.140 4.140 13 C 0.140 3.860 14 H 0.112 0.888 15 N -0.729 5.729 16 C 0.535 3.465 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.087 3.913 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.399 0.601 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.080 0.920 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 -9.222 17.742 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.125 4.125 3 C -0.179 4.179 4 C -0.107 4.107 5 C -0.171 4.171 6 C 0.319 3.681 7 O -0.422 6.422 8 N -0.354 5.354 9 C -0.014 4.014 10 C -0.131 4.131 11 H 0.117 0.883 12 C -0.198 4.198 13 C 0.034 3.966 14 H 0.130 0.870 15 N -0.385 5.385 16 C 0.321 3.679 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.037 4.037 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.234 0.766 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.438 -8.642 17.152 23.441 hybrid contribution 2.614 -0.324 0.707 2.728 sum -10.823 -8.966 17.860 22.727 Atomic orbital electron populations 1.23711 0.95214 1.01883 1.02522 1.21782 0.95448 0.95699 0.99549 1.20902 1.00214 0.94398 1.02431 1.20436 1.00846 0.94325 0.95119 1.21632 1.01218 0.94812 0.99428 1.20423 0.78891 0.86779 0.81959 1.90702 1.57779 1.63098 1.30621 1.48643 1.56442 1.23857 1.06475 1.22317 0.96517 0.85952 0.96653 1.22683 1.01414 0.95156 0.93828 0.88345 1.21655 0.97410 0.98856 1.01909 1.21833 0.85126 0.92085 0.97588 0.87011 1.46071 1.07985 1.48950 1.35452 1.20351 0.91364 0.77490 0.78681 1.90708 1.43522 1.53888 1.50700 1.23537 0.95346 1.05243 1.06368 1.85378 1.10777 1.53337 1.33670 1.22820 0.91994 1.33127 1.20556 0.90980 1.24991 0.98876 0.94922 0.94746 1.70005 1.33961 1.28535 1.17769 0.86227 0.83029 0.78332 0.77944 1.19921 1.20789 1.19933 1.22737 1.01436 0.98197 0.81335 0.88515 0.88429 0.91163 0.91835 0.91739 0.90625 0.90477 0.88591 0.88771 0.90128 0.91311 0.92134 0.91905 0.91371 0.76562 0.89164 0.89248 0.92093 0.90190 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 13.89 29.01 0.40 -1.09 16 2 C -0.12 -1.02 5.31 -101.06 -0.54 -1.56 16 3 C -0.12 -0.90 10.03 36.00 0.36 -0.54 16 4 C -0.07 -0.63 4.67 -27.88 -0.13 -0.76 16 5 C -0.13 -1.16 4.87 -27.88 -0.14 -1.29 16 6 C 0.53 5.99 7.85 -10.99 -0.09 5.91 16 7 O -0.54 -7.92 16.24 5.56 0.09 -7.83 16 8 N -0.62 -6.15 3.34 -170.14 -0.57 -6.72 16 9 C 0.11 0.94 6.35 -2.53 -0.02 0.92 16 10 C -0.11 -0.81 3.51 -88.47 -0.31 -1.12 16 11 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.14 -0.93 8.85 37.16 0.33 -0.60 16 13 C 0.14 1.36 3.04 -66.10 -0.20 1.16 16 14 H 0.11 1.21 7.62 -51.93 -0.40 0.81 16 15 N -0.73 -8.35 4.51 -52.03 -0.23 -8.58 16 16 C 0.53 8.92 7.85 -10.99 -0.09 8.83 16 17 O -0.51 -10.50 15.55 5.56 0.09 -10.42 16 18 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 24 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.09 0.83 6.26 -2.81 -0.02 0.81 16 29 H 0.10 0.68 7.99 -52.49 -0.42 0.26 16 30 H 0.10 0.65 8.04 -52.49 -0.42 0.23 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.08 0.72 7.94 -51.93 -0.41 0.31 16 35 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 39 H 0.07 0.59 7.98 -51.93 -0.41 0.18 16 40 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.40 3.74 7.01 -40.82 -0.29 3.46 16 44 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 45 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.08 0.88 8.04 -51.92 -0.42 0.46 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -34.47 410.60 -9.07 -43.54 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.12 Total: 1.13 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.01 Total: -4.65 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.07 Total: -40.25 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.18 Total: -18.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.47 -9.07 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072215247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.542 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds