Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99954 * 2 1 4 4 C 1.50707 * 120.00108 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46831 * 95.00225 * 4 2 1 6 6 C 1.50700 * 109.47054 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99842 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.47426 * 125.64619 * 179.97438 * 8 6 5 10 10 C 1.54912 * 104.83401 * 155.84073 * 9 8 6 11 11 H 1.08996 * 111.03948 * 278.92309 * 10 9 8 12 12 C 1.53001 * 111.00645 * 155.08309 * 10 9 8 13 13 C 1.55159 * 101.57828 * 37.00900 * 10 9 8 14 14 H 1.09005 * 110.72065 * 205.95948 * 13 10 9 15 15 N 1.46499 * 110.72230 * 82.86175 * 13 10 9 16 16 C 1.34778 * 120.00278 * 157.43687 * 15 13 10 17 17 O 1.21278 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00209 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99753 * 24 22 20 26 26 H 1.48497 * 109.46782 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00030 * 24 22 20 28 28 C 1.47482 * 125.59618 * 359.93723 * 8 6 5 29 29 H 1.08000 * 119.99631 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00566 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46753 * 269.99953 * 3 2 1 32 32 H 1.08998 * 109.47403 * 29.99577 * 3 2 1 33 33 H 1.08999 * 109.47510 * 150.00043 * 3 2 1 34 34 H 1.08999 * 109.46943 * 334.99896 * 4 2 1 35 35 H 1.08995 * 109.46862 * 214.99770 * 4 2 1 36 36 H 1.09002 * 109.47130 * 59.99963 * 5 4 2 37 37 H 1.09003 * 109.47047 * 299.99746 * 5 4 2 38 38 H 1.09001 * 110.36851 * 37.00636 * 9 8 6 39 39 H 1.08999 * 110.46381 * 274.72717 * 9 8 6 40 40 H 1.09004 * 109.46913 * 307.80327 * 12 10 9 41 41 H 1.08995 * 109.47253 * 67.80307 * 12 10 9 42 42 H 1.08994 * 109.46855 * 187.80698 * 12 10 9 43 43 H 0.97000 * 119.99972 * 337.44043 * 15 13 10 44 44 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 45 45 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 46 46 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 47 47 H 1.09008 * 110.03302 * 61.71318 * 28 8 6 48 48 H 1.09002 * 109.96713 * 300.40421 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3052 0.0006 5 6 2.4275 -1.6845 -1.4363 6 6 3.1804 -2.9899 -1.4358 7 8 3.4044 -3.5604 -0.3892 8 7 3.6058 -3.5229 -2.5983 9 6 4.3504 -4.7871 -2.7423 10 6 4.0578 -5.2571 -4.1891 11 1 3.0917 -5.7581 -4.2499 12 6 5.1759 -6.1635 -4.7080 13 6 4.0342 -3.9085 -4.9558 14 1 3.4163 -3.9843 -5.8507 15 7 5.3933 -3.4846 -5.3012 16 6 5.5931 -2.6272 -6.3217 17 8 4.6476 -2.2061 -6.9538 18 6 6.9913 -2.1917 -6.6773 19 16 6.9289 -1.0478 -8.0786 20 6 8.6470 -0.7097 -8.2743 21 1 9.3672 -1.1749 -7.6175 22 6 9.0755 0.1496 -9.2765 23 7 8.1978 0.7162 -10.0773 24 14 10.8976 0.5020 -9.4889 25 1 11.6173 -0.7657 -9.7714 26 1 11.0909 1.4443 -10.6202 27 1 11.4330 1.1082 -8.2435 28 6 3.4023 -2.9373 -3.9365 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 2.2451 1.6197 -1.0277 32 1 1.4744 2.0648 0.5137 33 1 3.0159 1.1748 0.5138 34 1 1.4386 -2.0853 0.4353 35 1 2.9742 -1.1986 0.5899 36 1 3.0524 -0.9043 -1.8709 37 1 1.5167 -1.7910 -2.0257 38 1 3.9899 -5.5236 -2.0240 39 1 5.4186 -4.6178 -2.6072 40 1 6.1374 -5.6679 -4.5732 41 1 5.1699 -7.1018 -4.1534 42 1 5.0171 -6.3664 -5.7670 43 1 6.1495 -3.8211 -4.7954 44 1 7.5863 -3.0644 -6.9463 45 1 7.4450 -1.6924 -5.8211 46 1 8.4972 1.3171 -10.7775 47 1 3.8923 -1.9654 -3.9972 48 1 2.3364 -2.8305 -4.1379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072215247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = -88.598404 kcal Electronic energy + Delta-G solvation = -26910.322524 eV Core-core repulsion = 23090.438127 eV Total energy + Delta-G solvation = -3819.884397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64490 -40.46755 -38.84838 -37.28419 -35.20240 -34.57153 -33.58898 -32.10464 -31.29420 -29.30567 -28.19749 -27.77174 -27.63131 -25.24390 -23.88995 -22.17533 -21.06188 -20.19613 -19.85910 -19.38393 -18.23665 -17.77455 -17.56000 -16.99393 -16.86633 -16.65844 -16.27111 -16.02142 -15.66751 -15.29369 -15.20212 -14.81593 -14.66088 -14.47773 -14.37875 -14.10828 -13.77047 -13.52891 -13.46223 -13.39182 -13.17552 -13.14898 -13.02361 -12.86482 -12.64009 -12.55791 -12.38317 -12.02893 -11.97909 -11.86198 -11.77501 -11.66817 -11.12120 -11.04484 -10.93502 -10.26411 -10.21025 -9.93869 -9.75276 -8.64072 -8.33840 -6.10787 1.27259 1.28068 1.43886 1.47240 1.52791 1.56834 1.61149 1.91909 2.24540 2.29971 3.00387 3.18037 3.33011 3.48122 3.60217 3.82276 3.92437 3.97914 4.02355 4.14300 4.21799 4.23277 4.31481 4.34865 4.44940 4.53106 4.55158 4.61068 4.66099 4.71491 4.76517 4.79005 4.82794 4.93205 5.03527 5.06839 5.08651 5.12649 5.14682 5.19897 5.38543 5.42871 5.47307 5.73406 5.96220 6.20518 6.36766 6.46559 7.04699 7.07974 7.23024 8.74849 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.002406 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.426891 B =11634.339575 C =13315.536517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.136 4.136 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.126 4.126 6 C 0.526 3.474 7 O -0.581 6.581 8 N -0.617 5.617 9 C 0.103 3.897 10 C -0.093 4.093 11 H 0.114 0.886 12 C -0.141 4.141 13 C 0.136 3.864 14 H 0.106 0.894 15 N -0.704 5.704 16 C 0.541 3.459 17 O -0.556 6.556 18 C -0.132 4.132 19 S -0.144 6.144 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.263 1.263 28 C 0.091 3.909 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.413 0.587 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.271 0.729 47 H 0.066 0.934 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 -10.259 18.683 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.136 4.136 3 C -0.180 4.180 4 C -0.103 4.103 5 C -0.165 4.165 6 C 0.316 3.684 7 O -0.462 6.462 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.112 4.112 11 H 0.132 0.868 12 C -0.198 4.198 13 C 0.031 3.969 14 H 0.124 0.876 15 N -0.359 5.359 16 C 0.327 3.673 17 O -0.433 6.433 18 C -0.284 4.284 19 S 0.083 5.917 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.188 1.188 28 C -0.033 4.033 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.251 0.749 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.784 -9.719 18.121 24.212 hybrid contribution 2.339 -0.097 0.510 2.396 sum -10.445 -9.815 18.631 23.507 Atomic orbital electron populations 1.23864 0.95058 1.02603 1.01409 1.21801 0.95735 0.95507 1.00559 1.20914 1.00224 0.94258 1.02568 1.20351 1.00226 0.94672 0.95004 1.21637 1.01603 0.93665 0.99620 1.20813 0.78651 0.87220 0.81669 1.90684 1.59379 1.64252 1.31877 1.48688 1.55945 1.24135 1.06273 1.22443 0.96556 0.85449 0.97414 1.22631 1.02685 0.93803 0.92082 0.86769 1.21674 0.96980 0.99387 1.01798 1.21986 0.83630 0.93636 0.97689 0.87610 1.45792 1.09611 1.46907 1.33564 1.19942 0.89820 0.78056 0.79487 1.90702 1.44241 1.55821 1.52575 1.23384 0.97559 1.03996 1.03424 1.85507 1.11482 1.56450 1.38286 1.23173 0.92348 1.33193 1.20804 0.90057 1.26082 1.04105 0.94570 0.94282 1.70167 1.36461 1.29440 1.18587 0.85055 0.76569 0.78524 0.78184 1.18690 1.20459 1.18811 1.22698 1.02348 0.97328 0.80944 0.88127 0.87418 0.91114 0.90994 0.91936 0.91415 0.91748 0.88067 0.87254 0.90294 0.91020 0.91986 0.90382 0.91797 0.74943 0.87265 0.87634 0.92011 0.91521 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 13.89 67.78 0.94 -1.73 16 2 C -0.14 -2.11 5.31 -16.49 -0.09 -2.19 16 3 C -0.12 -1.71 10.03 71.23 0.71 -1.00 16 4 C -0.06 -1.15 4.67 29.85 0.14 -1.01 16 5 C -0.13 -2.11 4.87 29.85 0.15 -1.97 16 6 C 0.53 11.47 7.85 87.66 0.69 12.16 16 7 O -0.58 -16.80 16.24 -3.04 -0.05 -16.85 16 8 N -0.62 -11.31 3.34 -810.61 -2.70 -14.02 16 9 C 0.10 1.58 6.35 86.86 0.55 2.14 16 10 C -0.09 -1.11 3.51 -9.40 -0.03 -1.14 16 11 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 12 C -0.14 -1.45 8.85 71.98 0.64 -0.82 16 13 C 0.14 2.38 3.04 46.18 0.14 2.52 16 14 H 0.11 2.11 7.62 -2.38 -0.02 2.09 16 15 N -0.70 -14.77 4.51 -436.92 -1.97 -16.74 16 16 C 0.54 17.53 7.85 87.66 0.69 18.21 16 17 O -0.56 -22.77 15.55 -3.02 -0.05 -22.82 16 18 C -0.13 -4.86 6.16 71.23 0.44 -4.42 16 19 S -0.14 -7.67 20.57 -56.49 -1.16 -8.83 16 20 C -0.55 -30.43 9.50 67.96 0.65 -29.78 16 21 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -54.84 13.22 21.65 0.29 -54.56 16 24 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 28 C 0.09 1.58 6.26 86.64 0.54 2.12 16 29 H 0.10 1.29 7.99 -2.91 -0.02 1.27 16 30 H 0.11 1.27 8.04 -2.91 -0.02 1.24 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 33 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 34 H 0.07 1.29 7.94 -2.39 -0.02 1.27 16 35 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 39 H 0.07 1.07 7.98 -2.39 -0.02 1.05 16 40 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.41 6.63 7.01 -92.71 -0.65 5.98 16 44 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 45 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 47 H 0.07 1.39 8.04 -2.38 -0.02 1.37 16 48 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -76.36 410.60 3.29 -73.08 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.29 Total: 21.56 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 6.62 Total: -5.62 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.39 Total: -85.31 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.10 Total: -39.67 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.16 Total: -8.83 kcal Total: -76.36 3.29 -73.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072215247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.520 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds