Wall clock time and date at job start Sat Apr 11 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.88788 * 2 1 4 4 C 1.54911 * 111.03787 * 123.90157 * 2 1 3 5 5 N 1.47429 * 104.83136 * 155.10099 * 4 2 1 6 6 C 1.34777 * 125.64415 * 155.90964 * 5 4 2 7 7 O 1.21273 * 120.00620 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99489 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.46836 * 178.19524 * 8 6 5 10 10 C 1.53009 * 115.54812 * 294.33022 * 9 8 6 11 11 C 1.53005 * 117.49848 * 148.66475 * 9 8 6 12 12 C 1.52989 * 117.50326 * 80.00365 * 9 8 6 13 13 C 1.47015 * 108.70347 * 335.86982 * 5 4 2 14 14 C 1.54328 * 107.27438 * 1.06076 * 13 5 4 15 15 H 1.08999 * 110.87014 * 140.62144 * 14 13 5 16 16 N 1.46498 * 110.72179 * 263.82975 * 14 13 5 17 17 C 1.34779 * 119.99777 * 268.51777 * 16 14 13 18 18 O 1.21275 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99394 * 179.97438 * 17 16 14 20 20 S 1.81000 * 109.46655 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99831 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00409 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99618 * 179.72716 * 21 20 19 24 24 N 1.31631 * 120.00351 * 0.27410 * 23 21 20 25 25 Si 1.86801 * 119.99754 * 180.27754 * 23 21 20 26 26 H 1.48502 * 109.47196 * 89.99791 * 25 23 21 27 27 H 1.48495 * 109.46925 * 209.99560 * 25 23 21 28 28 H 1.48501 * 109.46980 * 329.99694 * 25 23 21 29 29 H 1.09001 * 109.46743 * 183.87854 * 1 2 3 30 30 H 1.08993 * 109.47084 * 303.88237 * 1 2 3 31 31 H 1.09000 * 109.46973 * 63.88199 * 1 2 3 32 32 H 1.08996 * 110.36535 * 273.93690 * 4 2 1 33 33 H 1.08996 * 110.36459 * 36.25851 * 4 2 1 34 34 H 1.08997 * 109.47156 * 298.19381 * 8 6 5 35 35 H 1.08998 * 109.47019 * 58.19414 * 8 6 5 36 36 H 1.08994 * 109.46668 * 63.54718 * 10 9 8 37 37 H 1.08992 * 109.46780 * 183.54840 * 10 9 8 38 38 H 1.09000 * 109.46821 * 303.54675 * 10 9 8 39 39 H 1.09003 * 117.49623 * 359.97438 * 11 9 8 40 40 H 1.09000 * 117.49639 * 145.01757 * 11 9 8 41 41 H 1.08999 * 117.50453 * 214.98061 * 12 9 8 42 42 H 1.09003 * 117.49568 * 359.97438 * 12 9 8 43 43 H 1.09002 * 109.88905 * 241.64696 * 13 5 4 44 44 H 1.09001 * 109.88455 * 120.47450 * 13 5 4 45 45 H 0.96997 * 119.99997 * 88.52125 * 16 14 13 46 46 H 1.08992 * 109.47044 * 60.00551 * 19 17 16 47 47 H 1.08995 * 109.47342 * 299.99771 * 19 17 16 48 48 H 0.96996 * 120.00303 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8065 1.2001 5 7 3.4281 -1.2421 0.7726 6 6 4.4490 -1.5601 1.5930 7 8 4.3027 -1.4987 2.7953 8 6 5.7726 -1.9922 1.0161 9 6 6.7644 -2.2494 2.1523 10 6 7.1627 -1.0200 2.9715 11 6 7.8290 -3.3258 1.9306 12 6 6.6640 -3.5867 2.8886 13 6 3.4679 -1.2730 -0.6967 14 6 2.0862 -0.8075 -1.2025 15 1 2.1887 -0.1701 -2.0807 16 7 1.2274 -1.9574 -1.4963 17 6 1.2066 -2.4833 -2.7371 18 8 1.8991 -2.0049 -3.6101 19 6 0.3235 -3.6666 -3.0391 20 16 0.5174 -4.1362 -4.7763 21 6 -0.5946 -5.5010 -4.8503 22 1 -1.1414 -5.8004 -3.9685 23 6 -0.7723 -6.1875 -6.0435 24 7 -0.1061 -5.8223 -7.1185 25 14 -1.9569 -7.6296 -6.1239 26 1 -3.3094 -7.1392 -6.4924 27 1 -1.4870 -8.5998 -7.1451 28 1 -2.0162 -8.2959 -4.7981 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5729 0.8531 31 1 -0.3633 0.4524 -0.9227 32 1 2.1568 -0.1719 2.0834 33 1 1.4532 -1.6705 1.4023 34 1 5.6362 -2.9067 0.4389 35 1 6.1596 -1.2070 0.3667 36 1 6.2850 -0.6239 3.4822 37 1 7.9150 -1.3023 3.7079 38 1 7.5717 -0.2582 2.3079 39 1 7.8225 -3.8509 0.9755 40 1 8.8129 -3.1582 2.3688 41 1 6.8819 -3.5909 3.9566 42 1 5.8910 -4.2832 2.5638 43 1 3.6659 -2.2881 -1.0410 44 1 4.2426 -0.5981 -1.0609 45 1 0.6738 -2.3403 -0.7979 46 1 -0.7164 -3.4021 -2.8477 47 1 0.6084 -4.5044 -2.4027 48 1 -0.2306 -6.3017 -7.9524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072412897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:28 Heat of formation + Delta-G solvation = -52.915171 kcal Electronic energy + Delta-G solvation = -27244.674577 eV Core-core repulsion = 23426.337521 eV Total energy + Delta-G solvation = -3818.337056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78892 -39.53647 -38.24402 -37.20646 -34.16091 -32.66353 -32.46424 -30.10875 -30.07413 -28.49473 -28.11177 -26.35028 -25.52197 -23.34885 -22.63745 -21.13632 -20.19300 -20.18490 -18.75514 -17.98171 -17.26736 -16.82551 -16.32794 -16.06043 -15.66342 -15.28241 -14.84637 -14.81469 -14.80235 -14.45984 -14.07051 -13.79410 -13.49587 -13.40845 -13.19174 -12.90886 -12.69229 -12.60183 -12.47871 -12.40603 -12.24201 -12.02771 -11.70395 -11.69154 -11.49318 -11.27184 -11.09754 -11.06615 -11.02830 -10.79041 -10.58201 -10.18943 -9.85912 -9.71819 -9.52644 -9.13679 -9.08155 -8.86024 -8.29440 -6.54906 -6.25725 -3.96632 2.44898 2.65402 2.93634 2.95208 3.19677 3.24887 3.28575 3.53803 3.62097 3.96899 4.16596 4.27023 4.36085 4.43198 4.50400 4.58747 4.72167 4.84605 4.91094 5.01713 5.06499 5.09599 5.10763 5.21930 5.24305 5.29750 5.40402 5.42247 5.46371 5.47585 5.59035 5.59267 5.66922 5.70446 5.72165 5.77621 5.81980 5.82731 5.91394 5.91780 6.00135 6.07715 6.11128 6.49625 7.24875 7.55246 7.57105 7.97314 8.31268 8.48303 9.19888 10.81649 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.002343 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.938103 B =11945.398682 C =13151.987072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.109 3.891 5 N -0.621 5.621 6 C 0.532 3.468 7 O -0.534 6.534 8 C -0.101 4.101 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.176 4.176 12 C -0.163 4.163 13 C 0.086 3.914 14 C 0.140 3.860 15 H 0.113 0.887 16 N -0.729 5.729 17 C 0.535 3.465 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.399 0.601 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 11.457 19.301 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.116 0.884 4 C -0.014 4.014 5 N -0.356 5.356 6 C 0.321 3.679 7 O -0.410 6.410 8 C -0.141 4.141 9 C -0.111 4.111 10 C -0.172 4.172 11 C -0.213 4.213 12 C -0.200 4.200 13 C -0.038 4.038 14 C 0.034 3.966 15 H 0.131 0.869 16 N -0.384 5.384 17 C 0.321 3.679 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.234 0.766 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.384 12.221 18.337 24.360 hybrid contribution -1.833 -1.788 1.118 2.794 sum 8.552 10.433 19.456 23.675 Atomic orbital electron populations 1.21649 0.92916 1.02493 1.02729 1.22692 0.97192 0.99625 0.93637 0.88391 1.22307 0.83135 0.98296 0.97624 1.48550 1.12362 1.67626 1.07064 1.20302 0.84647 0.76692 0.86210 1.90679 1.82959 1.52951 1.14425 1.21201 0.91556 1.03489 0.97869 1.21038 0.99313 0.91798 0.98949 1.21335 1.01611 0.95466 0.98776 1.23154 0.94351 1.02353 1.01471 1.22946 1.00447 0.98475 0.98143 1.22638 0.98807 1.02783 0.79565 1.21837 0.88310 0.88054 0.98438 0.86881 1.46054 1.46622 1.33343 1.12382 1.20351 0.82209 0.83987 0.81323 1.90706 1.41784 1.60886 1.45452 1.23535 1.01337 0.97756 1.07856 1.85381 1.58574 1.39668 0.99591 1.22858 1.29056 1.17254 0.99250 0.90932 1.24994 0.96245 0.97662 0.94673 1.70011 1.39659 1.39932 1.00654 0.86168 0.80349 0.80900 0.78087 1.20251 1.20733 1.19698 0.92145 0.91959 0.91407 0.90152 0.91412 0.88711 0.88505 0.90847 0.92721 0.92728 0.88690 0.88661 0.88801 0.89068 0.90385 0.90284 0.76585 0.89165 0.89250 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 2 C -0.11 -0.82 3.51 -88.47 -0.31 -1.13 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.11 0.94 6.33 -2.53 -0.02 0.92 16 5 N -0.62 -6.09 3.33 -170.52 -0.57 -6.65 16 6 C 0.53 5.93 7.71 -10.98 -0.08 5.85 16 7 O -0.53 -7.48 14.73 5.56 0.08 -7.40 16 8 C -0.10 -0.91 4.78 -27.88 -0.13 -1.04 16 9 C -0.11 -1.01 1.60 -154.51 -0.25 -1.26 16 10 C -0.11 -1.02 9.45 37.16 0.35 -0.67 16 11 C -0.18 -1.40 9.92 -26.69 -0.26 -1.66 16 12 C -0.16 -1.51 9.92 -26.70 -0.26 -1.78 16 13 C 0.09 0.82 6.23 -3.07 -0.02 0.80 16 14 C 0.14 1.36 3.09 -66.09 -0.20 1.16 16 15 H 0.11 1.23 7.55 -51.93 -0.39 0.84 16 16 N -0.73 -8.37 4.45 -52.03 -0.23 -8.60 16 17 C 0.53 8.94 7.85 -10.98 -0.09 8.86 16 18 O -0.51 -10.53 15.51 5.56 0.09 -10.44 16 19 C -0.15 -2.92 6.16 36.01 0.22 -2.69 16 20 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 21 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 25 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.06 0.41 6.48 -51.93 -0.34 0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 33 H 0.07 0.58 7.99 -51.93 -0.41 0.17 16 34 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.79 6.62 -51.93 -0.34 0.44 16 37 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.40 3.77 7.12 -40.82 -0.29 3.48 16 46 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 47 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -34.23 404.90 -9.63 -43.86 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.07 Total: 1.71 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.53 Total: -5.92 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.07 Total: -40.21 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.23 -9.63 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072412897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.052 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds