Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50709 * 119.99882 * 2 1 4 4 C 1.52995 * 109.47418 * 124.99848 * 3 2 1 5 5 C 1.52990 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47158 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00099 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00010 * 180.02562 * 6 5 4 9 9 C 1.47018 * 125.65132 * 180.02562 * 8 6 5 10 10 C 1.54322 * 107.27313 * 178.98549 * 9 8 6 11 11 H 1.08996 * 110.72180 * 96.17334 * 10 9 8 12 12 C 1.53004 * 110.87141 * 219.37169 * 10 9 8 13 13 C 1.55150 * 102.94357 * 337.80483 * 10 9 8 14 14 H 1.08999 * 111.00443 * 277.38960 * 13 10 9 15 15 N 1.46496 * 111.00537 * 153.57492 * 13 10 9 16 16 C 1.34777 * 120.00271 * 154.99846 * 15 13 10 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99664 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47231 * 60.00264 * 24 22 20 26 26 H 1.48505 * 109.47271 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47260 * 299.99689 * 24 22 20 28 28 C 1.47430 * 125.64694 * 0.05035 * 8 6 5 29 29 H 1.07998 * 119.99789 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00002 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00228 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46831 * 5.00214 * 3 2 1 33 33 H 1.09002 * 109.46755 * 245.00232 * 3 2 1 34 34 H 1.09009 * 109.46981 * 59.99874 * 4 3 2 35 35 H 1.08994 * 109.47203 * 300.00522 * 4 3 2 36 36 H 1.08999 * 109.47558 * 60.00258 * 5 4 3 37 37 H 1.09000 * 109.47351 * 300.00128 * 5 4 3 38 38 H 1.09004 * 109.88045 * 59.56769 * 9 8 6 39 39 H 1.09003 * 109.88346 * 298.40417 * 9 8 6 40 40 H 1.08998 * 109.47365 * 173.61201 * 12 10 9 41 41 H 1.09007 * 109.47295 * 293.61007 * 12 10 9 42 42 H 1.09002 * 109.47030 * 53.60732 * 12 10 9 43 43 H 0.97005 * 120.00266 * 335.00429 * 15 13 10 44 44 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 45 45 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 46 46 H 0.97005 * 119.99806 * 179.97438 * 23 22 20 47 47 H 1.09005 * 110.35981 * 85.24850 * 28 8 6 48 48 H 1.08990 * 110.36936 * 322.92843 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 6 3.8004 2.6580 1.1812 6 6 4.7578 2.6853 2.3447 7 8 4.8219 1.7383 3.0996 8 7 5.5427 3.7622 2.5464 9 6 6.5168 3.9206 3.6361 10 6 7.1946 5.2943 3.4487 11 1 6.7109 6.0506 4.0669 12 6 8.6890 5.2127 3.7670 13 6 6.9696 5.5903 1.9425 14 1 7.7204 5.0912 1.3298 15 7 6.9611 7.0326 1.6863 16 6 7.2826 7.5020 0.4645 17 8 7.5786 6.7303 -0.4230 18 6 7.2744 8.9858 0.2011 19 16 7.7459 9.2960 -1.5186 20 6 7.6565 11.0555 -1.5479 21 1 7.3737 11.5967 -0.6570 22 6 7.9505 11.7460 -2.7154 23 7 8.2966 11.0865 -3.8007 24 14 7.8563 13.6113 -2.7462 25 1 8.8045 14.1713 -1.7498 26 1 8.2140 14.1028 -4.1011 27 1 6.4752 14.0429 -2.4123 28 6 5.5663 4.9768 1.7110 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5067 1.0920 35 1 2.4773 1.2357 2.1129 36 1 3.0958 3.4848 1.2705 37 1 4.3582 2.7551 0.2498 38 1 7.2636 3.1284 3.5838 39 1 6.0053 3.8878 4.5982 40 1 9.1655 6.1612 3.5196 41 1 8.8236 5.0044 4.8285 42 1 9.1424 4.4141 3.1798 43 1 6.7240 7.6499 2.3960 44 1 7.9840 9.4770 0.8670 45 1 6.2745 9.3811 0.3804 46 1 8.5017 11.5691 -4.6168 47 1 4.7908 5.6725 2.0313 48 1 5.4341 4.7174 0.6607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072630272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -71.011402 kcal Electronic energy + Delta-G solvation = -26407.761017 eV Core-core repulsion = 22588.639250 eV Total energy + Delta-G solvation = -3819.121768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65207 -39.33140 -37.85703 -36.22708 -34.23794 -33.09970 -32.47658 -32.39915 -30.06345 -28.26367 -27.94545 -26.19150 -25.52970 -23.38711 -22.18592 -20.91505 -20.37827 -20.17875 -19.38033 -17.90243 -17.36847 -16.96779 -16.43330 -16.05492 -15.89470 -15.33452 -14.97367 -14.85019 -14.73118 -14.25985 -13.98121 -13.85176 -13.79432 -13.60296 -13.38460 -13.25928 -12.69393 -12.60917 -12.56407 -12.40462 -12.19025 -11.99360 -11.82293 -11.51673 -11.49826 -11.20154 -11.10129 -11.07573 -11.03798 -10.96712 -10.80537 -10.10815 -9.87722 -9.63244 -9.54972 -9.18363 -9.09729 -8.88183 -8.30734 -6.55973 -6.26250 -3.97525 1.97382 2.39594 2.56261 2.91940 2.98652 3.20124 3.24230 3.26891 3.58935 4.00606 4.15891 4.25106 4.39102 4.46011 4.49871 4.65738 4.82797 4.86730 4.94828 4.96940 5.05385 5.07135 5.09088 5.17039 5.21080 5.31016 5.34512 5.41601 5.48215 5.50693 5.51339 5.57605 5.60752 5.65597 5.79397 5.81000 5.84267 5.93556 5.95156 6.03679 6.05987 6.32615 6.45425 6.46406 7.19531 7.53216 7.55276 7.90845 8.30180 8.45709 9.19114 10.81025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.002113 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.693503 B =13246.686439 C =15271.750380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.098 4.098 4 C -0.098 4.098 5 C -0.139 4.139 6 C 0.531 3.469 7 O -0.542 6.542 8 N -0.619 5.619 9 C 0.114 3.886 10 C -0.111 4.111 11 H 0.091 0.909 12 C -0.142 4.142 13 C 0.140 3.860 14 H 0.109 0.891 15 N -0.728 5.728 16 C 0.535 3.465 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.085 3.915 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.401 0.599 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 -15.582 15.003 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.179 4.179 6 C 0.320 3.680 7 O -0.419 6.419 8 N -0.354 5.354 9 C -0.009 4.009 10 C -0.130 4.130 11 H 0.109 0.891 12 C -0.200 4.200 13 C 0.033 3.967 14 H 0.127 0.873 15 N -0.382 5.382 16 C 0.321 3.679 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.039 4.039 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.236 0.764 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.553 -17.438 13.698 23.767 hybrid contribution -0.550 2.531 1.318 2.906 sum -9.103 -14.908 15.015 23.034 Atomic orbital electron populations 1.23856 0.95990 1.01810 1.01849 1.22959 0.96021 0.98565 0.99269 1.20816 0.98248 0.95535 0.98871 1.21280 0.97683 0.96064 0.98599 1.21717 0.98076 1.00752 0.97333 1.20454 0.80422 0.80615 0.86497 1.90701 1.68583 1.34747 1.47915 1.48435 1.40077 1.17268 1.29622 1.21986 0.91474 0.96730 0.90728 1.22523 0.97704 0.96880 0.95903 0.89097 1.21760 0.93408 1.03007 1.01828 1.22038 0.96523 0.82423 0.95704 0.87304 1.45887 1.72477 1.06254 1.13595 1.20391 0.75329 0.90767 0.81419 1.90715 1.45830 1.58581 1.43541 1.23539 1.05332 0.93585 1.08023 1.85405 1.89084 1.07569 1.01155 1.22817 1.54300 0.91306 1.00116 0.90949 1.24989 0.94468 0.99467 0.94619 1.70001 1.42881 1.36141 1.01203 0.86226 0.78729 0.83071 0.77486 1.19928 1.20797 1.19929 1.22821 0.98475 0.86362 0.96270 0.88622 0.88603 0.87383 0.91344 0.90648 0.91023 0.91148 0.88788 0.88494 0.90878 0.91135 0.91509 0.92006 0.92007 0.76443 0.89103 0.89100 0.92082 0.90683 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 14.32 29.01 0.42 -0.98 16 2 C -0.15 -1.13 9.52 -36.02 -0.34 -1.47 16 3 C -0.10 -0.71 5.66 -27.88 -0.16 -0.87 16 4 C -0.10 -0.84 4.48 -26.74 -0.12 -0.96 16 5 C -0.14 -1.17 4.71 -27.89 -0.13 -1.30 16 6 C 0.53 5.99 7.85 -10.98 -0.09 5.90 16 7 O -0.54 -7.91 16.31 5.56 0.09 -7.82 16 8 N -0.62 -6.19 3.33 -170.53 -0.57 -6.76 16 9 C 0.11 1.00 6.47 -3.07 -0.02 0.98 16 10 C -0.11 -0.82 3.19 -88.79 -0.28 -1.11 16 11 H 0.09 0.55 8.00 -51.93 -0.42 0.14 16 12 C -0.14 -1.02 9.17 37.16 0.34 -0.68 16 13 C 0.14 1.40 2.87 -65.80 -0.19 1.21 16 14 H 0.11 1.34 7.45 -51.93 -0.39 0.95 16 15 N -0.73 -8.01 5.20 -51.74 -0.27 -8.28 16 16 C 0.53 8.80 7.85 -10.98 -0.09 8.72 16 17 O -0.51 -10.55 15.50 5.56 0.09 -10.46 16 18 C -0.15 -2.84 6.16 36.01 0.22 -2.62 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 21 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.55 13.22 55.49 0.73 -24.81 16 24 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 28 C 0.09 0.80 6.38 -2.54 -0.02 0.79 16 29 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.10 0.62 7.84 -52.48 -0.41 0.21 16 31 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.75 7.85 -51.93 -0.41 0.34 16 38 H 0.07 0.68 7.78 -51.93 -0.40 0.28 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 43 H 0.40 3.25 8.57 -40.82 -0.35 2.90 16 44 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 45 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.88 7.48 -51.93 -0.39 0.49 16 LS Contribution 413.00 15.07 6.22 6.22 Total: -1.00 -34.64 413.00 -9.39 -44.03 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.20 Total: 0.68 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.26 Total: -4.93 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.10 Total: -39.85 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.18 Total: -18.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.64 -9.39 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072630272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.980 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds