Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50709 * 119.99882 * 2 1 4 4 C 1.52995 * 109.47418 * 124.99848 * 3 2 1 5 5 C 1.52990 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47158 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00099 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00010 * 180.02562 * 6 5 4 9 9 C 1.47018 * 125.65132 * 180.02562 * 8 6 5 10 10 C 1.54322 * 107.27313 * 178.98549 * 9 8 6 11 11 H 1.08996 * 110.72180 * 96.17334 * 10 9 8 12 12 C 1.53004 * 110.87141 * 219.37169 * 10 9 8 13 13 C 1.55150 * 102.94357 * 337.80483 * 10 9 8 14 14 H 1.08999 * 111.00443 * 277.38960 * 13 10 9 15 15 N 1.46496 * 111.00537 * 153.57492 * 13 10 9 16 16 C 1.34777 * 120.00271 * 154.99846 * 15 13 10 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99664 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47231 * 60.00264 * 24 22 20 26 26 H 1.48505 * 109.47271 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47260 * 299.99689 * 24 22 20 28 28 C 1.47430 * 125.64694 * 0.05035 * 8 6 5 29 29 H 1.07998 * 119.99789 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00002 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00228 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46831 * 5.00214 * 3 2 1 33 33 H 1.09002 * 109.46755 * 245.00232 * 3 2 1 34 34 H 1.09009 * 109.46981 * 59.99874 * 4 3 2 35 35 H 1.08994 * 109.47203 * 300.00522 * 4 3 2 36 36 H 1.08999 * 109.47558 * 60.00258 * 5 4 3 37 37 H 1.09000 * 109.47351 * 300.00128 * 5 4 3 38 38 H 1.09004 * 109.88045 * 59.56769 * 9 8 6 39 39 H 1.09003 * 109.88346 * 298.40417 * 9 8 6 40 40 H 1.08998 * 109.47365 * 173.61201 * 12 10 9 41 41 H 1.09007 * 109.47295 * 293.61007 * 12 10 9 42 42 H 1.09002 * 109.47030 * 53.60732 * 12 10 9 43 43 H 0.97005 * 120.00266 * 335.00429 * 15 13 10 44 44 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 45 45 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 46 46 H 0.97005 * 119.99806 * 179.97438 * 23 22 20 47 47 H 1.09005 * 110.35981 * 85.24850 * 28 8 6 48 48 H 1.08990 * 110.36936 * 322.92843 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 6 3.8004 2.6580 1.1812 6 6 4.7578 2.6853 2.3447 7 8 4.8219 1.7383 3.0996 8 7 5.5427 3.7622 2.5464 9 6 6.5168 3.9206 3.6361 10 6 7.1946 5.2943 3.4487 11 1 6.7109 6.0506 4.0669 12 6 8.6890 5.2127 3.7670 13 6 6.9696 5.5903 1.9425 14 1 7.7204 5.0912 1.3298 15 7 6.9611 7.0326 1.6863 16 6 7.2826 7.5020 0.4645 17 8 7.5786 6.7303 -0.4230 18 6 7.2744 8.9858 0.2011 19 16 7.7459 9.2960 -1.5186 20 6 7.6565 11.0555 -1.5479 21 1 7.3737 11.5967 -0.6570 22 6 7.9505 11.7460 -2.7154 23 7 8.2966 11.0865 -3.8007 24 14 7.8563 13.6113 -2.7462 25 1 8.8045 14.1713 -1.7498 26 1 8.2140 14.1028 -4.1011 27 1 6.4752 14.0429 -2.4123 28 6 5.5663 4.9768 1.7110 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5067 1.0920 35 1 2.4773 1.2357 2.1129 36 1 3.0958 3.4848 1.2705 37 1 4.3582 2.7551 0.2498 38 1 7.2636 3.1284 3.5838 39 1 6.0053 3.8878 4.5982 40 1 9.1655 6.1612 3.5196 41 1 8.8236 5.0044 4.8285 42 1 9.1424 4.4141 3.1798 43 1 6.7240 7.6499 2.3960 44 1 7.9840 9.4770 0.8670 45 1 6.2745 9.3811 0.3804 46 1 8.5017 11.5691 -4.6168 47 1 4.7908 5.6725 2.0313 48 1 5.4341 4.7174 0.6607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072630272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -93.187841 kcal Electronic energy + Delta-G solvation = -26408.722660 eV Core-core repulsion = 22588.639250 eV Total energy + Delta-G solvation = -3820.083410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54408 -40.47787 -38.83771 -36.87566 -35.30899 -34.55707 -33.90239 -33.08085 -31.30578 -29.13614 -28.82713 -27.61361 -26.84239 -24.25745 -22.89759 -21.82389 -21.43288 -20.78951 -20.16011 -19.77138 -18.24877 -17.98117 -17.54266 -16.92208 -16.87262 -16.84449 -16.35362 -16.00734 -15.91055 -15.29814 -14.96723 -14.71885 -14.60775 -14.50672 -14.43637 -14.23751 -14.14981 -13.54452 -13.39842 -13.28452 -13.14322 -13.10185 -12.85112 -12.68585 -12.61969 -12.49807 -12.31956 -12.16836 -11.79897 -11.77389 -11.68310 -11.64642 -11.10537 -11.03109 -10.92460 -10.23764 -10.21180 -10.19715 -9.74566 -8.62747 -8.32221 -6.09321 1.28010 1.40605 1.45370 1.47412 1.52479 1.57214 1.61329 1.83723 2.28708 2.34154 3.02117 3.22220 3.36853 3.46618 3.65562 3.80845 3.82462 3.96671 4.01128 4.15402 4.19342 4.28063 4.34762 4.36383 4.42393 4.54614 4.57276 4.60895 4.61807 4.68863 4.72308 4.78311 4.85238 4.90252 4.96464 5.04268 5.09068 5.17044 5.19748 5.33297 5.36324 5.44574 5.47619 5.77385 5.90164 6.22097 6.36115 6.50827 7.04684 7.09602 7.25414 8.76368 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.002113 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.693503 B =13246.686439 C =15271.750380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C -0.093 4.093 4 C -0.092 4.092 5 C -0.135 4.135 6 C 0.524 3.476 7 O -0.581 6.581 8 N -0.618 5.618 9 C 0.110 3.890 10 C -0.093 4.093 11 H 0.118 0.882 12 C -0.142 4.142 13 C 0.137 3.863 14 H 0.084 0.916 15 N -0.698 5.698 16 C 0.540 3.460 17 O -0.560 6.560 18 C -0.130 4.130 19 S -0.151 6.151 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.262 1.262 28 C 0.089 3.911 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.421 0.579 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.270 0.730 47 H 0.095 0.905 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 -13.919 17.063 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.183 4.183 3 C -0.130 4.130 4 C -0.130 4.130 5 C -0.174 4.174 6 C 0.315 3.685 7 O -0.462 6.462 8 N -0.352 5.352 9 C -0.013 4.013 10 C -0.112 4.112 11 H 0.136 0.864 12 C -0.200 4.200 13 C 0.031 3.969 14 H 0.102 0.898 15 N -0.352 5.352 16 C 0.326 3.674 17 O -0.438 6.438 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.187 1.187 26 H -0.207 1.207 27 H -0.186 1.186 28 C -0.035 4.035 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.259 0.741 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.723 -15.758 15.817 24.352 hybrid contribution -0.198 1.909 0.792 2.076 sum -9.921 -13.849 16.609 23.793 Atomic orbital electron populations 1.24024 0.95913 1.02552 1.00931 1.23062 0.96408 0.98753 1.00120 1.20780 0.98075 0.95803 0.98335 1.21192 0.97479 0.95703 0.98637 1.21750 0.97906 1.01322 0.96432 1.20940 0.80640 0.80209 0.86682 1.90681 1.69922 1.36107 1.49446 1.48483 1.39775 1.17126 1.29773 1.22094 0.91212 0.97211 0.90768 1.22476 0.98075 0.96649 0.93992 0.86398 1.21765 0.92939 1.02451 1.02803 1.22059 0.96472 0.81136 0.97281 0.89777 1.45510 1.70379 1.07226 1.12115 1.20047 0.75304 0.89579 0.82464 1.90714 1.48363 1.59228 1.45474 1.23379 1.06783 0.95508 1.02490 1.85584 1.89972 1.08226 1.08569 1.23178 1.53859 0.91621 1.00674 0.89812 1.26092 0.93886 1.05039 0.94135 1.70172 1.44283 1.38318 1.01974 0.85046 0.79364 0.76203 0.77653 1.18717 1.20664 1.18635 1.22801 0.98411 0.86370 0.95907 0.87788 0.88035 0.87373 0.90520 0.90287 0.92450 0.92292 0.86874 0.87692 0.91773 0.90370 0.91812 0.90255 0.93107 0.74094 0.87102 0.86863 0.92083 0.88664 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 14.32 67.78 0.97 -1.62 16 2 C -0.17 -2.40 9.52 25.65 0.24 -2.15 16 3 C -0.09 -1.28 5.66 29.85 0.17 -1.11 16 4 C -0.09 -1.55 4.48 30.59 0.14 -1.42 16 5 C -0.13 -2.16 4.71 29.85 0.14 -2.02 16 6 C 0.52 11.56 7.85 87.66 0.69 12.25 16 7 O -0.58 -17.10 16.31 -3.02 -0.05 -17.15 16 8 N -0.62 -11.55 3.33 -811.83 -2.70 -14.25 16 9 C 0.11 1.75 6.47 86.73 0.56 2.31 16 10 C -0.09 -1.13 3.19 -9.61 -0.03 -1.16 16 11 H 0.12 0.90 8.00 -2.39 -0.02 0.88 16 12 C -0.14 -1.74 9.17 71.98 0.66 -1.08 16 13 C 0.14 2.49 2.87 46.38 0.13 2.62 16 14 H 0.08 2.04 7.45 -2.39 -0.02 2.02 16 15 N -0.70 -13.51 5.20 -436.01 -2.27 -15.78 16 16 C 0.54 17.07 7.85 87.66 0.69 17.76 16 17 O -0.56 -23.25 15.50 -3.02 -0.05 -23.29 16 18 C -0.13 -4.59 6.16 71.24 0.44 -4.15 16 19 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 20 C -0.55 -29.88 9.50 67.95 0.65 -29.23 16 21 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 22 C 0.01 0.74 5.49 84.86 0.47 1.20 16 23 N -0.91 -54.67 13.22 21.65 0.29 -54.38 16 24 Si 1.00 42.27 29.55 68.60 2.03 44.29 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 28 C 0.09 1.51 6.38 86.85 0.55 2.06 16 29 H 0.10 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.10 1.19 7.84 -2.91 -0.02 1.17 16 31 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.08 0.93 7.79 -2.38 -0.02 0.91 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.12 8.10 -2.38 -0.02 1.10 16 35 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.53 7.85 -2.39 -0.02 1.51 16 38 H 0.06 1.15 7.78 -2.38 -0.02 1.13 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.05 0.74 8.07 -2.39 -0.02 0.72 16 43 H 0.42 5.07 8.57 -92.70 -0.79 4.28 16 44 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 45 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 46 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 47 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.08 1.50 7.48 -2.39 -0.02 1.48 16 Total: -1.00 -78.02 413.00 2.69 -75.33 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.14 Total: 20.04 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.47 Total: -5.74 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -4.68 Total: -84.41 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.10 Total: -40.44 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -78.02 2.69 -75.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072630272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.857 kcal (2) G-P(sol) polarization free energy of solvation -78.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds