Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00260 * 2 1 4 4 C 1.52997 * 109.46940 * 125.00042 * 3 2 1 5 5 C 1.53004 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.47426 * 125.64311 * 179.44245 * 8 6 5 10 10 C 1.55133 * 104.71908 * 155.81228 * 9 8 6 11 11 H 1.08994 * 111.22907 * 279.17677 * 10 9 8 12 12 C 1.53001 * 110.90207 * 155.27214 * 10 9 8 13 13 C 1.55156 * 101.48303 * 37.29714 * 10 9 8 14 14 H 1.09003 * 110.71620 * 205.96724 * 13 10 9 15 15 N 1.46500 * 110.87483 * 82.76835 * 13 10 9 16 16 C 1.34774 * 120.00000 * 159.93702 * 15 13 10 17 17 O 1.21278 * 120.00345 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99757 * 179.97438 * 16 15 13 19 19 S 1.81008 * 109.47239 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99957 * 179.97438 * 19 18 16 21 21 H 1.07991 * 120.00162 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99617 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00084 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00187 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47262 * 90.00116 * 24 22 20 26 26 H 1.48501 * 109.47224 * 210.00369 * 24 22 20 27 27 H 1.48500 * 109.47371 * 330.00015 * 24 22 20 28 28 C 1.47016 * 125.64953 * 359.74753 * 8 6 5 29 29 H 1.08006 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00348 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.99803 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46839 * 4.99654 * 3 2 1 33 33 H 1.09001 * 109.46310 * 244.99417 * 3 2 1 34 34 H 1.09000 * 109.47849 * 59.99708 * 4 3 2 35 35 H 1.08998 * 109.47443 * 299.99576 * 4 3 2 36 36 H 1.09009 * 109.46730 * 59.99606 * 5 4 3 37 37 H 1.08998 * 109.46846 * 300.00150 * 5 4 3 38 38 H 1.08999 * 110.36638 * 274.74255 * 9 8 6 39 39 H 1.09000 * 110.36899 * 37.07072 * 9 8 6 40 40 H 1.08999 * 109.47466 * 307.97613 * 12 10 9 41 41 H 1.08997 * 109.47357 * 67.98418 * 12 10 9 42 42 H 1.09008 * 109.46855 * 187.98039 * 12 10 9 43 43 H 0.97003 * 119.99529 * 339.93059 * 15 13 10 44 44 H 1.08995 * 109.47518 * 299.99652 * 18 16 15 45 45 H 1.09006 * 109.47491 * 59.99783 * 18 16 15 46 46 H 0.96998 * 120.00532 * 180.02562 * 23 22 20 47 47 H 1.09004 * 109.88101 * 300.43815 * 28 8 6 48 48 H 1.08996 * 109.88464 * 61.60840 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8006 2.6577 1.1813 6 6 4.7571 2.6855 2.3455 7 8 4.8200 1.7391 3.1014 8 7 5.5383 3.7646 2.5502 9 6 6.5051 3.9289 3.6510 10 6 7.5355 4.9599 3.1199 11 1 8.2702 4.4846 2.4700 12 6 8.2215 5.6910 4.2757 13 6 6.6226 5.9232 2.3162 14 1 7.1866 6.4200 1.5268 15 7 5.9956 6.9080 3.2012 16 6 5.5056 8.0558 2.6922 17 8 5.5842 8.2736 1.5017 18 6 4.8601 9.0686 3.6025 19 16 4.3080 10.4905 2.6279 20 6 3.6128 11.4854 3.9051 21 1 3.6247 11.1377 4.9274 22 6 3.0498 12.7162 3.5972 23 7 2.5308 13.4598 4.5513 24 14 3.0299 13.3180 1.8289 25 1 1.7832 12.8607 1.1644 26 1 3.0850 14.8019 1.8104 27 1 4.2057 12.7700 1.1062 28 6 5.5628 4.9752 1.7164 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.7400 0.5064 1.0922 35 1 2.4773 1.2356 2.1130 36 1 3.0959 3.4846 1.2705 37 1 4.3584 2.7547 0.2498 38 1 6.0054 4.3122 4.5406 39 1 6.9961 2.9806 3.8694 40 1 7.4659 6.0984 4.9475 41 1 8.8552 4.9927 4.8223 42 1 8.8321 6.5029 3.8806 43 1 5.9329 6.7339 4.1534 44 1 4.0037 8.6151 4.1013 45 1 5.5825 9.3987 4.3491 46 1 2.1371 14.3197 4.3361 47 1 5.8347 4.7152 0.6933 48 1 4.5846 5.4557 1.7315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072630274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = -67.165159 kcal Electronic energy + Delta-G solvation = -26730.700495 eV Core-core repulsion = 22911.745513 eV Total energy + Delta-G solvation = -3818.954982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.80107 -39.40883 -37.87656 -36.24886 -34.25903 -32.96322 -32.48060 -32.34853 -30.20779 -28.38636 -28.11699 -26.23340 -25.65549 -23.53679 -22.16784 -21.13481 -20.27537 -20.20699 -19.26835 -18.02602 -17.34825 -16.91875 -16.48669 -16.23364 -15.81589 -15.53284 -15.11378 -14.97545 -14.68704 -14.55627 -14.01110 -13.93983 -13.75128 -13.52513 -13.30240 -13.07811 -12.85220 -12.81996 -12.60743 -12.55311 -12.17478 -12.03736 -11.86353 -11.73295 -11.38508 -11.30738 -11.21755 -11.08586 -11.04801 -11.02547 -10.64760 -10.11682 -9.90448 -9.66230 -9.64665 -9.22176 -9.04156 -8.92926 -8.56179 -6.97160 -6.32747 -4.05216 1.95866 2.38510 2.62424 2.70268 2.82183 3.21857 3.29770 3.46167 3.57756 3.87072 4.19124 4.28914 4.35500 4.43497 4.45643 4.63101 4.66564 4.82173 4.85460 4.93960 4.99730 5.01988 5.06250 5.13554 5.16073 5.20279 5.24182 5.31241 5.35909 5.44230 5.47011 5.48041 5.59138 5.64700 5.67783 5.70839 5.82038 5.84678 5.93953 5.94448 6.01886 6.31150 6.39660 6.44814 7.19047 7.45244 7.89629 7.90159 8.34620 8.37928 9.13118 10.76447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.002421 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.576828 B =11561.190802 C =13614.255323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.097 4.097 4 C -0.099 4.099 5 C -0.138 4.138 6 C 0.530 3.470 7 O -0.543 6.543 8 N -0.620 5.620 9 C 0.107 3.893 10 C -0.111 4.111 11 H 0.099 0.901 12 C -0.142 4.142 13 C 0.141 3.859 14 H 0.111 0.889 15 N -0.727 5.727 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.125 4.125 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.087 3.913 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.079 0.921 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.007 -24.231 -5.659 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.178 4.178 6 C 0.319 3.681 7 O -0.420 6.420 8 N -0.355 5.355 9 C -0.015 4.015 10 C -0.130 4.130 11 H 0.118 0.882 12 C -0.199 4.199 13 C 0.034 3.966 14 H 0.129 0.871 15 N -0.383 5.383 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.037 4.037 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.236 0.764 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.015 -24.257 -7.204 26.259 hybrid contribution -0.384 0.236 1.249 1.328 sum 6.631 -24.021 -5.954 25.621 Atomic orbital electron populations 1.23878 0.96005 1.01894 1.01530 1.22945 0.96029 0.98496 0.99560 1.20806 0.98272 0.95639 0.98683 1.21284 0.97672 0.95963 0.98731 1.21709 0.98126 1.00855 0.97130 1.20438 0.80344 0.80712 0.86569 1.90706 1.68220 1.35091 1.48019 1.48541 1.40659 1.17013 1.29248 1.22378 0.89450 0.99722 0.89963 1.22721 0.96589 0.95387 0.98328 0.88248 1.21668 1.00645 1.00510 0.97121 1.21835 0.92543 0.88562 0.93631 0.87134 1.46040 1.62011 1.18879 1.11358 1.20317 0.77306 0.81337 0.89049 1.90705 1.55524 1.76918 1.15911 1.23285 1.03336 0.98978 1.01992 1.84774 1.76774 1.14968 1.14865 1.22304 1.44065 1.05664 0.94955 0.89380 1.24722 0.93443 0.95287 0.97896 1.69935 1.37101 1.12036 1.32508 0.86732 0.81170 0.79030 0.84885 1.19210 1.19927 1.15928 1.22626 1.01141 0.85064 0.94851 0.88522 0.88597 0.87428 0.91259 0.90854 0.91114 0.91055 0.88679 0.88799 0.91249 0.90076 0.92111 0.91800 0.91365 0.76371 0.88514 0.88385 0.91902 0.90231 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 14.32 29.01 0.42 -0.98 16 2 C -0.15 -1.12 9.52 -36.02 -0.34 -1.46 16 3 C -0.10 -0.68 5.66 -27.88 -0.16 -0.84 16 4 C -0.10 -0.82 4.49 -26.73 -0.12 -0.94 16 5 C -0.14 -1.13 4.89 -27.88 -0.14 -1.26 16 6 C 0.53 5.83 7.85 -10.98 -0.09 5.74 16 7 O -0.54 -7.83 16.24 5.55 0.09 -7.74 16 8 N -0.62 -5.92 3.32 -170.38 -0.57 -6.48 16 9 C 0.11 0.90 6.36 -2.41 -0.02 0.88 16 10 C -0.11 -0.75 3.53 -88.35 -0.31 -1.06 16 11 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 12 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 13 C 0.14 1.27 3.00 -66.10 -0.20 1.07 16 14 H 0.11 1.10 7.69 -51.93 -0.40 0.70 16 15 N -0.73 -7.82 4.57 -52.03 -0.24 -8.05 16 16 C 0.53 8.37 7.84 -10.99 -0.09 8.28 16 17 O -0.52 -9.89 15.59 5.56 0.09 -9.80 16 18 C -0.13 -2.25 6.16 36.00 0.22 -2.03 16 19 S -0.14 -3.40 18.55 -107.50 -1.99 -5.39 16 20 C -0.52 -14.67 10.04 30.94 0.31 -14.36 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 23 N -0.88 -26.14 13.97 55.49 0.78 -25.37 16 24 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 28 C 0.09 0.78 6.22 -3.07 -0.02 0.77 16 29 H 0.10 0.66 7.84 -52.48 -0.41 0.25 16 30 H 0.10 0.59 8.06 -52.49 -0.42 0.16 16 31 H 0.11 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.58 7.99 -51.93 -0.41 0.16 16 39 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 40 H 0.06 0.37 6.39 -51.93 -0.33 0.04 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.40 3.51 6.92 -40.82 -0.28 3.23 16 44 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 45 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -34.45 407.78 -8.86 -43.31 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.15 Total: 0.88 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.29 Total: -4.10 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.03 Total: -39.91 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.18 Total: -17.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.45 -8.86 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072630274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.855 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds