Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46676 * 2 1 4 4 C 1.52998 * 109.47384 * 119.99944 * 2 1 3 5 5 C 1.53000 * 109.47339 * 185.00169 * 4 2 1 6 6 N 1.46501 * 109.46956 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99710 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99894 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.46938 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99725 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99704 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99692 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47397 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46970 * 120.00449 * 15 13 11 18 18 H 1.48503 * 109.47097 * 239.99873 * 15 13 11 19 19 N 1.46503 * 109.47257 * 240.00382 * 2 1 3 20 20 C 1.34778 * 120.00009 * 84.99586 * 19 2 1 21 21 O 1.21281 * 119.99666 * 0.02562 * 20 19 2 22 22 C 1.50691 * 119.99817 * 179.97438 * 20 19 2 23 23 H 1.08998 * 115.53207 * 325.49882 * 22 20 19 24 24 C 1.55467 * 117.18452 * 111.69448 * 22 20 19 25 25 H 1.09002 * 119.41966 * 356.46794 * 24 22 20 26 26 C 1.54265 * 118.30701 * 200.81824 * 24 22 20 27 27 C 1.55028 * 104.28349 * 272.89853 * 26 24 22 28 28 C 1.54894 * 102.68390 * 37.75958 * 27 26 24 29 29 C 1.53008 * 117.46020 * 180.02562 * 22 20 19 30 30 H 1.09001 * 119.29834 * 4.64485 * 29 22 20 31 31 H 1.09006 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47453 * 299.99619 * 1 2 3 33 33 H 1.09000 * 109.47455 * 60.00017 * 1 2 3 34 34 H 1.08996 * 109.47242 * 305.00604 * 4 2 1 35 35 H 1.09007 * 109.46819 * 65.00305 * 4 2 1 36 36 H 1.09005 * 109.47103 * 300.00316 * 5 4 2 37 37 H 1.08993 * 109.46559 * 60.00073 * 5 4 2 38 38 H 0.96993 * 120.00120 * 0.02562 * 6 5 4 39 39 H 1.08996 * 109.47330 * 300.00597 * 9 7 6 40 40 H 1.09000 * 109.46688 * 60.00635 * 9 7 6 41 41 H 0.97007 * 119.99931 * 179.97438 * 14 13 11 42 42 H 0.97001 * 119.99843 * 264.99916 * 19 2 1 43 43 H 1.09003 * 110.48518 * 31.48120 * 26 24 22 44 44 H 1.08999 * 110.49128 * 154.12164 * 26 24 22 45 45 H 1.09009 * 110.69793 * 279.51331 * 27 26 24 46 46 H 1.08990 * 110.87911 * 156.09758 * 27 26 24 47 47 H 1.09002 * 110.48891 * 203.48495 * 28 27 26 48 48 H 1.08998 * 110.48494 * 80.97583 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1585 -0.8007 2.0234 9 6 5.8765 -2.0510 4.0050 10 16 7.6804 -1.9234 4.0812 11 6 7.9875 -2.8134 5.5706 12 1 7.1639 -3.2368 6.1262 13 6 9.2880 -2.9712 6.0291 14 7 10.2919 -2.4556 5.3515 15 14 9.6136 -3.9154 7.6077 16 1 8.3262 -4.3908 8.1747 17 1 10.4862 -5.0812 7.3162 18 1 10.2877 -3.0253 8.5868 19 7 2.0183 -0.6905 -1.1962 20 6 2.1470 -0.0181 -2.3572 21 8 1.8589 1.1587 -2.4114 22 6 2.6499 -0.7283 -3.5874 23 1 3.3966 -1.5024 -3.4108 24 6 1.6381 -0.9403 -4.7486 25 1 0.6015 -0.6290 -4.6191 26 6 1.9320 -2.0473 -5.7820 27 6 2.8266 -1.3539 -6.8414 28 6 3.7178 -0.4258 -5.9790 29 6 2.7740 0.0909 -4.8738 30 1 2.5732 1.1618 -4.8457 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7716 1.2055 36 1 3.9995 -1.0727 0.4259 37 1 3.8531 0.4370 1.3573 38 1 3.4260 -1.7364 3.1101 39 1 5.4423 -1.5913 4.8928 40 1 5.5878 -3.1012 3.9615 41 1 11.2008 -2.5656 5.6722 42 1 2.2491 -1.6317 -1.1527 43 1 2.4685 -2.8730 -5.3144 44 1 1.0064 -2.4011 -6.2359 45 1 2.2207 -0.7715 -7.5356 46 1 3.4334 -2.0847 -7.3758 47 1 4.0953 0.4038 -6.5768 48 1 4.5439 -0.9876 -5.5431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -69.782063 kcal Electronic energy + Delta-G solvation = -26055.526972 eV Core-core repulsion = 22236.458513 eV Total energy + Delta-G solvation = -3819.068459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71491 -39.33649 -38.81760 -36.72496 -34.44193 -32.45208 -32.43299 -31.52014 -30.07403 -28.64682 -28.14899 -25.51221 -25.01885 -23.34701 -21.60049 -21.01678 -20.51092 -20.26319 -19.99635 -17.95232 -17.72540 -16.80155 -16.25551 -16.01478 -15.61117 -15.50743 -15.20040 -14.88848 -14.81591 -14.18122 -13.99086 -13.94085 -13.75974 -13.56494 -13.26371 -13.18404 -12.86399 -12.58944 -12.39319 -12.19295 -11.93801 -11.71797 -11.65112 -11.55195 -11.54182 -11.28496 -11.25977 -11.08096 -11.03192 -10.76676 -10.46237 -10.31484 -9.93999 -9.81968 -9.48227 -9.36260 -9.09105 -8.91074 -8.24330 -6.51346 -6.22962 -3.93594 2.14766 2.75743 3.00775 3.08251 3.20516 3.27046 3.31092 3.31485 3.67341 4.05104 4.19057 4.24016 4.31043 4.43076 4.52399 4.69397 4.72393 4.75048 4.81117 4.97575 5.03670 5.06075 5.07650 5.12293 5.17130 5.21123 5.29295 5.29963 5.36639 5.41737 5.56892 5.60358 5.61329 5.66416 5.68161 5.74719 5.83541 5.84341 5.87903 5.92003 5.98395 6.11906 6.19598 6.57680 7.19319 7.58576 7.67775 7.95350 8.34144 8.59516 9.22446 10.84501 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.001776 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.843261 B =15758.174638 C =16974.541394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.721 5.721 20 C 0.547 3.453 21 O -0.539 6.539 22 C -0.168 4.168 23 H 0.123 0.877 24 C -0.138 4.138 25 H 0.114 0.886 26 C -0.097 4.097 27 C -0.124 4.124 28 C -0.100 4.100 29 C -0.126 4.126 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.402 0.598 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.108 0.246 -19.152 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.373 5.373 20 C 0.334 3.666 21 O -0.416 6.416 22 C -0.189 4.189 23 H 0.141 0.859 24 C -0.157 4.157 25 H 0.132 0.868 26 C -0.134 4.134 27 C -0.161 4.161 28 C -0.137 4.137 29 C -0.144 4.144 30 H 0.139 0.861 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.237 0.763 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.804 2.048 -20.462 29.971 hybrid contribution -0.865 -1.907 2.381 3.171 sum -22.669 0.141 -18.081 28.997 Atomic orbital electron populations 1.22159 0.94808 1.02247 1.02771 1.20898 0.94140 0.97788 0.83144 0.88912 1.22126 0.95465 1.01935 0.98226 1.21255 0.92593 0.98025 0.88456 1.46001 1.07829 1.58571 1.27121 1.20329 0.81483 0.79734 0.86819 1.90713 1.54960 1.44305 1.49072 1.23529 1.06877 1.02522 0.97462 1.85423 0.92158 1.72682 1.33181 1.22909 0.95487 1.40029 1.09927 0.90867 1.25001 0.95058 0.95668 0.97912 1.70029 0.99359 1.42616 1.38245 0.86111 0.78394 0.79267 0.81680 1.19626 1.20569 1.20550 1.46030 1.67626 1.14140 1.09522 1.19579 0.76822 0.86576 0.83635 1.90700 1.49994 1.15865 1.84992 1.22773 1.03689 1.03816 0.88620 0.85929 1.23649 0.95399 0.99781 0.96822 0.86768 1.22023 1.00062 0.96551 0.94757 1.22726 0.97559 0.98269 0.97562 1.22033 0.97227 0.99221 0.95259 1.23257 0.98966 0.98151 0.94058 0.86112 0.92338 0.91380 0.91987 0.89398 0.90515 0.91641 0.91545 0.76850 0.89219 0.89244 0.92222 0.76344 0.91018 0.90851 0.91154 0.91003 0.90750 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16 2 C 0.15 1.14 2.57 -67.93 -0.17 0.97 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C 0.12 1.33 5.56 -4.04 -0.02 1.31 16 6 N -0.74 -9.34 5.56 -60.29 -0.33 -9.67 16 7 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 8 O -0.52 -11.80 15.86 5.55 0.09 -11.71 16 9 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 15 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 N -0.72 -5.73 4.53 -53.81 -0.24 -5.97 16 20 C 0.55 5.64 7.58 -10.99 -0.08 5.55 16 21 O -0.54 -7.52 15.99 5.56 0.09 -7.43 16 22 C -0.17 -1.38 5.86 -90.46 -0.53 -1.91 16 23 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 24 C -0.14 -0.98 6.75 -88.17 -0.60 -1.58 16 25 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 26 C -0.10 -0.53 6.64 -25.00 -0.17 -0.69 16 27 C -0.12 -0.66 6.92 -24.66 -0.17 -0.84 16 28 C -0.10 -0.66 6.61 -25.08 -0.17 -0.83 16 29 C -0.13 -1.05 6.31 -89.48 -0.56 -1.61 16 30 H 0.12 1.18 7.79 -51.93 -0.40 0.78 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.40 2.38 8.60 -40.82 -0.35 2.03 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 411.34 15.07 6.20 6.20 Total: -1.00 -36.55 411.34 -10.83 -47.37 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.21 Total: 1.72 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.92 Total: -7.53 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.15 Total: -41.06 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.55 -10.83 -47.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.407 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds