Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46676 * 2 1 4 4 C 1.52998 * 109.47384 * 119.99944 * 2 1 3 5 5 C 1.53000 * 109.47339 * 185.00169 * 4 2 1 6 6 N 1.46501 * 109.46956 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99710 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99894 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.46938 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99725 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99704 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99692 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47397 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46970 * 120.00449 * 15 13 11 18 18 H 1.48503 * 109.47097 * 239.99873 * 15 13 11 19 19 N 1.46503 * 109.47257 * 240.00382 * 2 1 3 20 20 C 1.34778 * 120.00009 * 84.99586 * 19 2 1 21 21 O 1.21281 * 119.99666 * 0.02562 * 20 19 2 22 22 C 1.50691 * 119.99817 * 179.97438 * 20 19 2 23 23 H 1.08998 * 115.53207 * 325.49882 * 22 20 19 24 24 C 1.55467 * 117.18452 * 111.69448 * 22 20 19 25 25 H 1.09002 * 119.41966 * 356.46794 * 24 22 20 26 26 C 1.54265 * 118.30701 * 200.81824 * 24 22 20 27 27 C 1.55028 * 104.28349 * 272.89853 * 26 24 22 28 28 C 1.54894 * 102.68390 * 37.75958 * 27 26 24 29 29 C 1.53008 * 117.46020 * 180.02562 * 22 20 19 30 30 H 1.09001 * 119.29834 * 4.64485 * 29 22 20 31 31 H 1.09006 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47453 * 299.99619 * 1 2 3 33 33 H 1.09000 * 109.47455 * 60.00017 * 1 2 3 34 34 H 1.08996 * 109.47242 * 305.00604 * 4 2 1 35 35 H 1.09007 * 109.46819 * 65.00305 * 4 2 1 36 36 H 1.09005 * 109.47103 * 300.00316 * 5 4 2 37 37 H 1.08993 * 109.46559 * 60.00073 * 5 4 2 38 38 H 0.96993 * 120.00120 * 0.02562 * 6 5 4 39 39 H 1.08996 * 109.47330 * 300.00597 * 9 7 6 40 40 H 1.09000 * 109.46688 * 60.00635 * 9 7 6 41 41 H 0.97007 * 119.99931 * 179.97438 * 14 13 11 42 42 H 0.97001 * 119.99843 * 264.99916 * 19 2 1 43 43 H 1.09003 * 110.48518 * 31.48120 * 26 24 22 44 44 H 1.08999 * 110.49128 * 154.12164 * 26 24 22 45 45 H 1.09009 * 110.69793 * 279.51331 * 27 26 24 46 46 H 1.08990 * 110.87911 * 156.09758 * 27 26 24 47 47 H 1.09002 * 110.48891 * 203.48495 * 28 27 26 48 48 H 1.08998 * 110.48494 * 80.97583 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1585 -0.8007 2.0234 9 6 5.8765 -2.0510 4.0050 10 16 7.6804 -1.9234 4.0812 11 6 7.9875 -2.8134 5.5706 12 1 7.1639 -3.2368 6.1262 13 6 9.2880 -2.9712 6.0291 14 7 10.2919 -2.4556 5.3515 15 14 9.6136 -3.9154 7.6077 16 1 8.3262 -4.3908 8.1747 17 1 10.4862 -5.0812 7.3162 18 1 10.2877 -3.0253 8.5868 19 7 2.0183 -0.6905 -1.1962 20 6 2.1470 -0.0181 -2.3572 21 8 1.8589 1.1587 -2.4114 22 6 2.6499 -0.7283 -3.5874 23 1 3.3966 -1.5024 -3.4108 24 6 1.6381 -0.9403 -4.7486 25 1 0.6015 -0.6290 -4.6191 26 6 1.9320 -2.0473 -5.7820 27 6 2.8266 -1.3539 -6.8414 28 6 3.7178 -0.4258 -5.9790 29 6 2.7740 0.0909 -4.8738 30 1 2.5732 1.1618 -4.8457 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7716 1.2055 36 1 3.9995 -1.0727 0.4259 37 1 3.8531 0.4370 1.3573 38 1 3.4260 -1.7364 3.1101 39 1 5.4423 -1.5913 4.8928 40 1 5.5878 -3.1012 3.9615 41 1 11.2008 -2.5656 5.6722 42 1 2.2491 -1.6317 -1.1527 43 1 2.4685 -2.8730 -5.3144 44 1 1.0064 -2.4011 -6.2359 45 1 2.2207 -0.7715 -7.5356 46 1 3.4334 -2.0847 -7.3758 47 1 4.0953 0.4038 -6.5768 48 1 4.5439 -0.9876 -5.5431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -94.821494 kcal Electronic energy + Delta-G solvation = -26056.612763 eV Core-core repulsion = 22236.458513 eV Total energy + Delta-G solvation = -3820.154251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43822 -40.62588 -39.58459 -37.60686 -35.59738 -34.58442 -33.17085 -32.27779 -31.24909 -29.22422 -29.15188 -27.65495 -25.71031 -24.21595 -22.28810 -21.77652 -21.50063 -21.11267 -20.61161 -19.83776 -18.54731 -17.80432 -17.48525 -17.22982 -16.87982 -16.68224 -16.22348 -16.02847 -15.81297 -15.56466 -15.15387 -14.83277 -14.63191 -14.47004 -14.44309 -14.06153 -13.83468 -13.56820 -13.56142 -13.15922 -13.02319 -12.91666 -12.64563 -12.51533 -12.43284 -12.38773 -12.28801 -12.00107 -11.95126 -11.72051 -11.70287 -11.15973 -11.09975 -11.03435 -10.97495 -10.61983 -10.26717 -10.21338 -10.06861 -8.67049 -8.34790 -6.12999 1.27414 1.37982 1.41748 1.47748 1.58603 1.60941 2.08793 2.25099 2.29118 2.65948 2.99562 3.31916 3.47591 3.67901 3.70310 3.73062 3.80286 4.02792 4.05104 4.10723 4.19100 4.24017 4.31033 4.41196 4.43932 4.48604 4.51124 4.51806 4.60563 4.66208 4.79756 4.79849 4.86994 4.96069 5.01760 5.10478 5.14143 5.19874 5.20200 5.26390 5.28818 5.41845 5.42605 5.47274 5.52012 6.20143 6.50031 6.52634 7.06680 7.21116 7.25646 8.74670 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.001776 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.843261 B =15758.174638 C =16974.541394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.065 0.935 4 C -0.121 4.121 5 C 0.120 3.880 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.128 4.128 10 S -0.157 6.157 11 C -0.544 4.544 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.275 1.275 19 N -0.710 5.710 20 C 0.541 3.459 21 O -0.584 6.584 22 C -0.172 4.172 23 H 0.137 0.863 24 C -0.123 4.123 25 H 0.110 0.890 26 C -0.093 4.093 27 C -0.120 4.120 28 C -0.099 4.099 29 C -0.144 4.144 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.271 0.729 42 H 0.414 0.586 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.475 -2.277 -18.098 31.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.070 5.930 11 C -0.692 4.692 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.200 1.200 19 N -0.362 5.362 20 C 0.328 3.672 21 O -0.465 6.465 22 C -0.193 4.193 23 H 0.155 0.845 24 C -0.142 4.142 25 H 0.128 0.872 26 C -0.130 4.130 27 C -0.158 4.158 28 C -0.136 4.136 29 C -0.162 4.162 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.080 0.920 42 H 0.251 0.749 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.242 -0.521 -19.387 31.045 hybrid contribution -0.244 -1.055 2.001 2.275 sum -24.485 -1.576 -17.386 30.071 Atomic orbital electron populations 1.22083 0.93421 1.03272 1.02407 1.20910 0.95113 0.96612 0.83488 0.91688 1.22035 0.91818 1.03764 0.98281 1.21360 0.95499 0.96359 0.87171 1.45689 1.06011 1.57161 1.27557 1.20130 0.82998 0.79287 0.85927 1.90705 1.56779 1.46717 1.50577 1.23368 1.00849 1.04506 0.99234 1.85638 0.99897 1.73370 1.34066 1.23243 0.96210 1.39890 1.09872 0.89743 1.26152 0.94721 0.96581 1.01856 1.70197 0.99939 1.44271 1.40458 0.84889 0.78824 0.77571 0.76552 1.17874 1.19958 1.20048 1.45998 1.66607 1.14644 1.08976 1.19990 0.76278 0.86166 0.84738 1.90676 1.52185 1.17835 1.85767 1.22810 1.04622 1.03980 0.87919 0.84503 1.23724 0.94680 0.99729 0.96068 0.87230 1.22064 1.00830 0.95982 0.94115 1.22730 0.97420 0.98209 0.97391 1.22051 0.97135 0.99551 0.94872 1.23276 1.00733 0.97287 0.94944 0.88492 0.90518 0.89990 0.94168 0.87395 0.87643 0.92505 0.93747 0.74289 0.87124 0.86880 0.92027 0.74867 0.90222 0.89521 0.90919 0.89702 0.90718 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.48 71.98 0.68 -1.12 16 2 C 0.14 2.09 2.57 44.99 0.12 2.21 16 3 H 0.06 1.34 7.58 -2.38 -0.02 1.33 16 4 C -0.12 -1.28 4.87 30.59 0.15 -1.13 16 5 C 0.12 2.45 5.56 86.38 0.48 2.93 16 6 N -0.71 -16.13 5.56 -463.05 -2.57 -18.70 16 7 C 0.53 19.06 7.85 87.66 0.69 19.75 16 8 O -0.57 -26.54 15.86 -3.05 -0.05 -26.59 16 9 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 10 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 11 C -0.54 -30.82 9.50 67.95 0.65 -30.18 16 12 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 13 C 0.01 0.65 5.49 84.86 0.47 1.12 16 14 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 15 Si 1.00 43.26 29.55 68.60 2.03 45.28 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 19 N -0.71 -10.73 4.53 -442.54 -2.00 -12.73 16 20 C 0.54 11.45 7.58 87.65 0.66 12.11 16 21 O -0.58 -17.39 15.99 -3.03 -0.05 -17.44 16 22 C -0.17 -2.84 5.86 -10.69 -0.06 -2.90 16 23 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 24 C -0.12 -1.69 6.75 -9.20 -0.06 -1.75 16 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 26 C -0.09 -0.84 6.64 31.72 0.21 -0.63 16 27 C -0.12 -1.11 6.92 31.94 0.22 -0.89 16 28 C -0.10 -1.28 6.61 31.66 0.21 -1.07 16 29 C -0.14 -2.49 6.31 -10.06 -0.06 -2.56 16 30 H 0.10 2.13 7.79 -2.39 -0.02 2.11 16 31 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.06 1.30 7.75 -2.38 -0.02 1.28 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.42 6.07 8.47 -92.71 -0.79 5.29 16 39 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 42 H 0.41 4.13 8.60 -92.71 -0.80 3.33 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -84.21 411.34 0.64 -83.57 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.62 Total: 20.79 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 4.78 Total: -8.61 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -4.29 Total: -87.17 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.10 Total: -44.02 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -84.21 0.64 -83.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.247 kcal (2) G-P(sol) polarization free energy of solvation -84.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds