Wall clock time and date at job start Sat Apr 11 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 N 1.46501 * 109.46843 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99967 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99932 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47103 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00059 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00520 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99953 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47043 * 90.00367 * 15 13 11 17 17 H 1.48499 * 109.47308 * 210.00272 * 15 13 11 18 18 H 1.48499 * 109.46951 * 330.00634 * 15 13 11 19 19 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 84.72116 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 C 1.52990 * 109.47398 * 180.02562 * 22 20 19 24 24 H 1.09010 * 110.34379 * 55.83548 * 23 22 20 25 25 C 1.51102 * 110.39209 * 293.54724 * 23 22 20 26 26 C 1.30523 * 111.10522 * 224.75244 * 25 23 22 27 27 C 1.51100 * 111.10653 * 359.97438 * 26 25 23 28 28 C 1.54632 * 104.72459 * 16.43616 * 27 26 25 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 35 35 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 36 36 H 0.96997 * 120.00090 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47320 * 300.00084 * 9 7 6 38 38 H 1.08998 * 109.47063 * 60.00511 * 9 7 6 39 39 H 0.96992 * 120.00530 * 179.97438 * 14 13 11 40 40 H 0.97001 * 120.00384 * 265.00562 * 19 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 42 42 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 43 43 H 1.08001 * 124.44361 * 44.72647 * 25 23 22 44 44 H 1.08004 * 124.44506 * 180.02562 * 26 25 23 45 45 H 1.08996 * 110.38759 * 135.24836 * 27 26 25 46 46 H 1.08999 * 110.38283 * 257.51253 * 27 26 25 47 47 H 1.09001 * 111.03538 * 217.33823 * 28 27 26 48 48 H 1.08993 * 111.04047 * 93.40248 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3396 2.7753 8 8 6.1585 -0.8005 2.0236 9 6 5.8764 -2.0500 4.0057 10 16 7.6803 -1.9223 4.0820 11 6 7.9874 -2.8122 5.5714 12 1 7.1637 -3.2357 6.1271 13 6 9.2878 -2.9699 6.0300 14 7 10.2918 -2.4543 5.3525 15 14 9.6134 -3.9128 7.6094 16 1 9.8140 -5.3503 7.2953 17 1 10.8323 -3.3746 8.2650 18 1 8.4526 -3.7632 8.5234 19 7 2.0184 -0.6906 -1.1962 20 6 2.1417 -0.0196 -2.3585 21 8 1.8533 1.1572 -2.4129 22 6 2.6382 -0.7314 -3.5905 23 6 2.6849 0.2505 -4.7628 24 1 3.2975 1.1155 -4.5085 25 6 1.2884 0.6871 -5.1400 26 6 1.1233 0.6673 -6.4346 27 6 2.3824 0.2149 -7.1368 28 6 3.2342 -0.4469 -6.0289 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.4259 -1.7350 3.1110 37 1 5.4421 -1.5902 4.8935 38 1 5.5877 -3.1002 3.9622 39 1 11.2006 -2.5642 5.6732 40 1 2.2490 -1.6318 -1.1527 41 1 3.6381 -1.1236 -3.4054 42 1 1.9643 -1.5536 -3.8314 43 1 0.5267 0.9769 -4.4313 44 1 0.2072 0.9395 -6.9378 45 1 2.1435 -0.5092 -7.9156 46 1 2.9077 1.0698 -7.5625 47 1 4.2933 -0.2295 -6.1673 48 1 3.0590 -1.5219 -5.9901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:27 Heat of formation + Delta-G solvation = -79.039596 kcal Electronic energy + Delta-G solvation = -25977.179189 eV Core-core repulsion = 22157.709293 eV Total energy + Delta-G solvation = -3819.469896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44828 -39.25307 -38.66181 -36.74471 -34.44043 -32.52039 -32.44128 -31.24296 -30.03973 -29.22412 -28.15023 -25.89670 -25.50281 -23.51213 -21.72384 -20.90851 -20.64226 -20.30688 -18.98703 -17.87451 -17.30930 -16.77604 -16.32036 -16.10468 -15.97363 -15.67669 -15.21710 -15.14559 -14.81721 -14.19833 -14.04935 -13.96274 -13.80008 -13.39440 -13.14386 -12.76711 -12.59017 -12.43563 -12.31438 -12.19967 -12.17256 -12.14129 -11.65783 -11.58387 -11.54935 -11.44392 -11.27106 -11.07588 -11.07480 -11.03885 -10.77309 -9.98758 -9.83205 -9.47605 -9.35324 -9.17763 -9.08508 -8.91624 -8.25192 -6.51678 -6.22970 -3.93814 2.02666 2.42610 2.87568 3.00406 3.07558 3.21161 3.26707 3.30610 3.66996 4.19045 4.21367 4.29305 4.43241 4.51867 4.52119 4.66395 4.73160 4.90073 5.03298 5.06258 5.07541 5.11106 5.12182 5.21196 5.22756 5.29232 5.32988 5.36934 5.49511 5.53914 5.58176 5.61167 5.63253 5.74518 5.83095 5.84774 5.87423 5.91753 5.96174 6.11446 6.19786 6.30878 6.57144 6.63481 7.21276 7.58020 7.67079 7.98902 8.33707 8.58773 9.22271 10.84445 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.001674 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.882566 B =16717.906748 C =17881.627853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.741 5.741 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.729 5.729 20 C 0.515 3.485 21 O -0.536 6.536 22 C -0.135 4.135 23 C -0.054 4.054 24 H 0.091 0.909 25 C -0.141 4.141 26 C -0.183 4.183 27 C -0.100 4.100 28 C -0.123 4.123 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.150 1.389 -18.767 29.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.381 5.381 20 C 0.302 3.698 21 O -0.413 6.413 22 C -0.175 4.175 23 C -0.073 4.073 24 H 0.109 0.891 25 C -0.159 4.159 26 C -0.201 4.201 27 C -0.137 4.137 28 C -0.160 4.160 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.235 0.765 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.827 3.192 -20.077 29.828 hybrid contribution -0.983 -1.899 2.303 3.143 sum -22.810 1.293 -17.774 28.946 Atomic orbital electron populations 1.22155 0.94924 1.02161 1.02736 1.20866 0.94044 0.97784 0.83301 0.88973 1.22124 0.95439 1.01897 0.98301 1.21250 0.92611 0.97999 0.88420 1.46007 1.07826 1.58630 1.27072 1.20326 0.81484 0.79715 0.86822 1.90710 1.54959 1.44342 1.49071 1.23531 1.06894 1.02520 0.97467 1.85414 0.92142 1.72673 1.33165 1.22869 0.95480 1.40135 1.09971 0.90925 1.24993 0.95042 0.95632 0.97900 1.70014 0.99386 1.42496 1.38364 0.86166 0.77979 0.79610 0.81726 1.20272 1.20735 1.19703 1.46176 1.68021 1.14210 1.09732 1.20713 0.77141 0.87437 0.84519 1.90706 1.49543 1.15952 1.85055 1.21741 1.03363 0.99560 0.92795 1.20820 0.95473 0.97613 0.93362 0.89141 1.23302 0.97065 0.99164 0.96355 1.23259 0.98472 1.02472 0.95856 1.21335 0.94313 1.00026 0.97986 1.22561 0.99709 0.99905 0.93866 0.92430 0.91490 0.91968 0.89500 0.90579 0.91635 0.91587 0.76854 0.89225 0.89243 0.92163 0.76519 0.88448 0.88802 0.85776 0.86164 0.91376 0.90842 0.90663 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.15 1.09 2.57 -67.93 -0.17 0.91 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.12 1.30 5.56 -4.04 -0.02 1.28 16 6 N -0.74 -9.21 5.56 -60.30 -0.33 -9.54 16 7 C 0.53 9.69 7.85 -10.99 -0.09 9.61 16 8 O -0.52 -11.71 15.86 5.56 0.09 -11.62 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.81 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 15 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 N -0.73 -5.24 4.53 -53.81 -0.24 -5.48 16 20 C 0.52 4.72 7.56 -10.98 -0.08 4.63 16 21 O -0.54 -6.83 14.35 5.55 0.08 -6.75 16 22 C -0.13 -0.91 5.12 -27.89 -0.14 -1.06 16 23 C -0.05 -0.44 2.54 -90.73 -0.23 -0.67 16 24 H 0.09 0.88 8.01 -51.92 -0.42 0.47 16 25 C -0.14 -1.23 9.19 -35.70 -0.33 -1.56 16 26 C -0.18 -1.40 10.77 -35.70 -0.38 -1.78 16 27 C -0.10 -0.65 6.81 -26.83 -0.18 -0.84 16 28 C -0.12 -0.79 6.71 -25.02 -0.17 -0.96 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.76 7.75 -51.94 -0.40 0.35 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 3.66 8.47 -40.82 -0.35 3.32 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 40 H 0.40 2.05 8.60 -40.82 -0.35 1.70 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.12 1.22 7.31 -52.49 -0.38 0.83 16 44 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.40 7.91 -51.93 -0.41 -0.01 16 LS Contribution 410.80 15.07 6.19 6.19 Total: -1.00 -36.37 410.80 -10.05 -46.42 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.17 Total: 1.65 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.16 Total: -7.90 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.15 Total: -40.37 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.37 -10.05 -46.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.623 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds