Wall clock time and date at job start Sat Apr 11 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 N 1.46501 * 109.46843 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99967 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99932 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47103 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00059 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00520 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99953 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47043 * 90.00367 * 15 13 11 17 17 H 1.48499 * 109.47308 * 210.00272 * 15 13 11 18 18 H 1.48499 * 109.46951 * 330.00634 * 15 13 11 19 19 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 84.72116 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 C 1.52990 * 109.47398 * 180.02562 * 22 20 19 24 24 H 1.09010 * 110.34379 * 55.83548 * 23 22 20 25 25 C 1.51102 * 110.39209 * 293.54724 * 23 22 20 26 26 C 1.30523 * 111.10522 * 224.75244 * 25 23 22 27 27 C 1.51100 * 111.10653 * 359.97438 * 26 25 23 28 28 C 1.54632 * 104.72459 * 16.43616 * 27 26 25 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 35 35 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 36 36 H 0.96997 * 120.00090 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47320 * 300.00084 * 9 7 6 38 38 H 1.08998 * 109.47063 * 60.00511 * 9 7 6 39 39 H 0.96992 * 120.00530 * 179.97438 * 14 13 11 40 40 H 0.97001 * 120.00384 * 265.00562 * 19 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 42 42 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 43 43 H 1.08001 * 124.44361 * 44.72647 * 25 23 22 44 44 H 1.08004 * 124.44506 * 180.02562 * 26 25 23 45 45 H 1.08996 * 110.38759 * 135.24836 * 27 26 25 46 46 H 1.08999 * 110.38283 * 257.51253 * 27 26 25 47 47 H 1.09001 * 111.03538 * 217.33823 * 28 27 26 48 48 H 1.08993 * 111.04047 * 93.40248 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3396 2.7753 8 8 6.1585 -0.8005 2.0236 9 6 5.8764 -2.0500 4.0057 10 16 7.6803 -1.9223 4.0820 11 6 7.9874 -2.8122 5.5714 12 1 7.1637 -3.2357 6.1271 13 6 9.2878 -2.9699 6.0300 14 7 10.2918 -2.4543 5.3525 15 14 9.6134 -3.9128 7.6094 16 1 9.8140 -5.3503 7.2953 17 1 10.8323 -3.3746 8.2650 18 1 8.4526 -3.7632 8.5234 19 7 2.0184 -0.6906 -1.1962 20 6 2.1417 -0.0196 -2.3585 21 8 1.8533 1.1572 -2.4129 22 6 2.6382 -0.7314 -3.5905 23 6 2.6849 0.2505 -4.7628 24 1 3.2975 1.1155 -4.5085 25 6 1.2884 0.6871 -5.1400 26 6 1.1233 0.6673 -6.4346 27 6 2.3824 0.2149 -7.1368 28 6 3.2342 -0.4469 -6.0289 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.4259 -1.7350 3.1110 37 1 5.4421 -1.5902 4.8935 38 1 5.5877 -3.1002 3.9622 39 1 11.2006 -2.5642 5.6732 40 1 2.2490 -1.6318 -1.1527 41 1 3.6381 -1.1236 -3.4054 42 1 1.9643 -1.5536 -3.8314 43 1 0.5267 0.9769 -4.4313 44 1 0.2072 0.9395 -6.9378 45 1 2.1435 -0.5092 -7.9156 46 1 2.9077 1.0698 -7.5625 47 1 4.2933 -0.2295 -6.1673 48 1 3.0590 -1.5219 -5.9901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:26 Heat of formation + Delta-G solvation = -104.075586 kcal Electronic energy + Delta-G solvation = -25978.264831 eV Core-core repulsion = 22157.709293 eV Total energy + Delta-G solvation = -3820.555538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15782 -40.57461 -39.32390 -37.57370 -35.55943 -34.57859 -33.24930 -32.06057 -31.13565 -29.78714 -29.20290 -27.64745 -26.48732 -24.36924 -22.42176 -21.75561 -21.43611 -21.23973 -19.84589 -19.59895 -18.05699 -17.76933 -17.39643 -17.16434 -16.87264 -16.79681 -16.68014 -16.11622 -15.90158 -15.69267 -15.13356 -14.84389 -14.71414 -14.47000 -14.41958 -13.92946 -13.55569 -13.41114 -13.16025 -13.03063 -12.89621 -12.88493 -12.77654 -12.67979 -12.64422 -12.43276 -12.38412 -12.09766 -12.01791 -11.91613 -11.71792 -11.67360 -11.13705 -10.96906 -10.72822 -10.26605 -10.17330 -10.01070 -9.79306 -8.66440 -8.34081 -6.12406 1.27847 1.39139 1.43227 1.48134 1.58301 1.61705 1.72369 2.25667 2.27532 2.30289 3.00175 3.32569 3.62898 3.73323 3.75007 3.82713 3.97114 4.04136 4.05136 4.11383 4.31709 4.36587 4.43899 4.46943 4.52366 4.53829 4.57713 4.62503 4.66909 4.78172 4.82089 4.89471 4.97928 4.98649 5.05173 5.09551 5.14892 5.28365 5.31148 5.41187 5.42328 5.43659 5.58185 5.68917 6.00476 6.20341 6.52531 6.61298 7.07255 7.26349 7.33871 8.75111 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.001674 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.882566 B =16717.906748 C =17881.627853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.064 0.936 4 C -0.121 4.121 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.129 4.129 10 S -0.156 6.156 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.258 1.258 19 N -0.720 5.720 20 C 0.509 3.491 21 O -0.580 6.580 22 C -0.129 4.129 23 C -0.057 4.057 24 H 0.064 0.936 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.102 4.102 28 C -0.119 4.119 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.419 0.581 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.414 0.586 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.321 -1.017 -17.916 31.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.159 4.159 5 C -0.003 4.003 6 N -0.365 5.365 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.071 5.929 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.181 1.181 19 N -0.373 5.373 20 C 0.297 3.703 21 O -0.459 6.459 22 C -0.168 4.168 23 C -0.075 4.075 24 H 0.082 0.918 25 C -0.179 4.179 26 C -0.194 4.194 27 C -0.139 4.139 28 C -0.156 4.156 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.257 0.743 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.250 0.750 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.148 0.852 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.068 0.743 -19.208 30.802 hybrid contribution -0.440 -1.086 1.964 2.287 sum -24.507 -0.344 -17.244 29.968 Atomic orbital electron populations 1.22076 0.93725 1.03109 1.02271 1.20833 0.94862 0.96590 0.83773 0.91819 1.22028 0.91841 1.03691 0.98377 1.21360 0.95467 0.96320 0.87168 1.45703 1.05995 1.57216 1.27543 1.20117 0.83008 0.79279 0.85919 1.90702 1.56765 1.46738 1.50557 1.23372 1.00868 1.04508 0.99253 1.85622 0.99874 1.73350 1.34020 1.23214 0.96222 1.40005 1.09952 0.89774 1.26136 0.94695 0.96526 1.01824 1.70184 0.99933 1.44167 1.40552 0.84946 0.78161 0.78043 0.76776 1.19244 1.20442 1.18139 1.46135 1.67190 1.14764 1.09180 1.21188 0.76527 0.87048 0.85586 1.90688 1.51551 1.17917 1.85776 1.21761 1.04445 0.99489 0.91155 1.20802 0.94706 0.97265 0.94767 0.91806 1.23250 0.97283 1.00781 0.96625 1.23513 0.99302 1.01035 0.95579 1.21395 0.93668 1.00487 0.98302 1.22572 0.99828 1.00542 0.92648 0.90666 0.90356 0.94100 0.87746 0.87749 0.92290 0.93828 0.74339 0.87189 0.86884 0.92023 0.74975 0.87147 0.86563 0.87546 0.85191 0.89825 0.90759 0.90256 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.48 71.98 0.68 -1.08 16 2 C 0.14 2.00 2.57 44.99 0.12 2.11 16 3 H 0.06 1.28 7.58 -2.39 -0.02 1.26 16 4 C -0.12 -1.24 4.87 30.60 0.15 -1.10 16 5 C 0.12 2.40 5.56 86.38 0.48 2.88 16 6 N -0.71 -15.91 5.56 -463.07 -2.57 -18.48 16 7 C 0.53 18.89 7.85 87.66 0.69 19.58 16 8 O -0.57 -26.28 15.86 -3.04 -0.05 -26.33 16 9 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 10 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 11 C -0.55 -30.85 9.50 67.95 0.65 -30.20 16 12 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 13 C 0.01 0.73 5.49 84.86 0.47 1.19 16 14 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 15 Si 1.00 43.10 29.55 68.60 2.03 45.12 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 N -0.72 -9.62 4.53 -442.53 -2.00 -11.63 16 20 C 0.51 9.45 7.56 87.66 0.66 10.11 16 21 O -0.58 -15.77 14.35 -3.04 -0.04 -15.81 16 22 C -0.13 -1.67 5.12 29.85 0.15 -1.52 16 23 C -0.06 -0.93 2.54 -10.86 -0.03 -0.96 16 24 H 0.06 1.36 8.01 -2.38 -0.02 1.34 16 25 C -0.16 -2.92 9.19 26.27 0.24 -2.68 16 26 C -0.18 -2.62 10.77 26.26 0.28 -2.34 16 27 C -0.10 -1.21 6.81 30.53 0.21 -1.00 16 28 C -0.12 -1.39 6.71 31.70 0.21 -1.17 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 34 H 0.06 1.29 7.75 -2.39 -0.02 1.27 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.42 6.00 8.47 -92.71 -0.79 5.21 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.41 3.32 8.60 -92.71 -0.80 2.52 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 2.27 7.31 -2.91 -0.02 2.25 16 44 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.09 0.77 7.91 -2.39 -0.02 0.75 16 Total: -1.00 -83.86 410.80 1.25 -82.60 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.63 Total: 20.47 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.40 Total: -10.64 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -4.29 Total: -85.68 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.09 Total: -42.14 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -83.86 1.25 -82.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.471 kcal (2) G-P(sol) polarization free energy of solvation -83.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds