Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47459 * 2 1 4 4 C 1.53002 * 109.46977 * 120.00692 * 2 1 3 5 5 C 1.52998 * 109.46797 * 185.00015 * 4 2 1 6 6 N 1.46508 * 109.46740 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99731 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99892 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.47223 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00112 * 179.97438 * 10 9 7 12 12 H 1.08007 * 120.00080 * 0.02562 * 11 10 9 13 13 C 1.38804 * 120.00122 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00038 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47153 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46833 * 120.00294 * 15 13 11 18 18 H 1.48493 * 109.47139 * 240.00293 * 15 13 11 19 19 N 1.46501 * 109.47027 * 240.00145 * 2 1 3 20 20 C 1.34775 * 120.00077 * 85.00294 * 19 2 1 21 21 O 1.21278 * 120.00160 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99938 * 180.02562 * 20 19 2 23 23 C 1.53000 * 109.46895 * 180.02562 * 22 20 19 24 24 H 1.09002 * 110.34163 * 304.16323 * 23 22 20 25 25 C 1.51104 * 110.38951 * 66.45183 * 23 22 20 26 26 C 1.30527 * 111.10523 * 135.60605 * 25 23 22 27 27 C 1.51104 * 111.10149 * 359.61668 * 26 25 23 28 28 C 1.54632 * 110.48311 * 181.81364 * 23 22 20 29 29 H 1.09000 * 109.46966 * 299.99874 * 1 2 3 30 30 H 1.09001 * 109.46766 * 59.99644 * 1 2 3 31 31 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46880 * 304.99544 * 4 2 1 33 33 H 1.08996 * 109.47374 * 64.99435 * 4 2 1 34 34 H 1.08997 * 109.47576 * 299.99011 * 5 4 2 35 35 H 1.09001 * 109.47647 * 60.00048 * 5 4 2 36 36 H 0.96993 * 120.00095 * 359.97438 * 6 5 4 37 37 H 1.09003 * 109.47066 * 299.99708 * 9 7 6 38 38 H 1.09001 * 109.47430 * 59.99853 * 9 7 6 39 39 H 0.96989 * 119.99934 * 179.97438 * 14 13 11 40 40 H 0.97005 * 120.00195 * 264.99783 * 19 2 1 41 41 H 1.08994 * 109.46984 * 59.99938 * 22 20 19 42 42 H 1.08999 * 109.46960 * 299.99434 * 22 20 19 43 43 H 1.08002 * 124.44506 * 315.33615 * 25 23 22 44 44 H 1.07991 * 124.44863 * 179.73328 * 26 25 23 45 45 H 1.08996 * 110.52393 * 225.02179 * 27 26 25 46 46 H 1.08993 * 110.29475 * 102.72697 * 27 26 25 47 47 H 1.09002 * 111.03487 * 334.53448 * 28 23 22 48 48 H 1.09000 * 111.03782 * 98.43484 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5647 -0.6134 1.3136 6 7 4.0530 -1.3037 2.5101 7 6 5.3740 -1.3399 2.7753 8 8 6.1584 -0.8014 2.0232 9 6 5.8763 -2.0504 4.0057 10 16 7.6802 -1.9238 4.0813 11 6 7.9871 -2.8124 5.5715 12 1 7.1633 -3.2347 6.1279 13 6 9.2877 -2.9707 6.0299 14 7 10.2918 -2.4565 5.3516 15 14 9.6130 -3.9121 7.6102 16 1 8.3252 -4.3852 8.1786 17 1 10.4842 -5.0793 7.3206 18 1 10.2881 -3.0208 8.5873 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0182 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5878 23 6 2.7011 0.2546 -4.7588 24 1 1.7238 0.7120 -4.9133 25 6 3.7458 1.3170 -4.5078 26 6 4.4649 1.5306 -5.5759 27 6 4.0258 0.6396 -6.7146 28 6 3.1703 -0.4617 -6.0464 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -0.2619 2.1369 33 1 1.7515 -1.7716 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3574 36 1 3.4256 -1.7347 3.1113 37 1 5.4419 -1.5906 4.8935 38 1 5.5876 -3.1005 3.9622 39 1 11.2005 -2.5667 5.6721 40 1 2.2490 -1.6318 -1.1527 41 1 1.9759 -1.5505 -3.8326 42 1 3.6479 -1.1213 -3.3987 43 1 3.8771 1.8350 -3.5692 44 1 5.2694 2.2485 -5.6372 45 1 4.8907 0.1997 -7.2110 46 1 3.4266 1.2054 -7.4279 47 1 3.7751 -1.3369 -5.8090 48 1 2.3218 -0.7337 -6.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = -79.037263 kcal Electronic energy + Delta-G solvation = -26088.258836 eV Core-core repulsion = 22268.789041 eV Total energy + Delta-G solvation = -3819.469795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43851 -39.24597 -38.63170 -36.74071 -34.43835 -32.51124 -32.44181 -31.22930 -30.03786 -29.17227 -28.14833 -25.87817 -25.50390 -23.50641 -21.71337 -20.90140 -20.62305 -20.30347 -18.94311 -17.87537 -17.31107 -16.69317 -16.28559 -16.14588 -15.97501 -15.67486 -15.37914 -14.93058 -14.81926 -14.19571 -14.03414 -13.97584 -13.78607 -13.42306 -13.14188 -12.75529 -12.60207 -12.39746 -12.29925 -12.18927 -12.13074 -12.11157 -11.65692 -11.57604 -11.53857 -11.42130 -11.25724 -11.08337 -11.04401 -11.03450 -10.76873 -9.98829 -9.82247 -9.47445 -9.34907 -9.10510 -9.09328 -8.91484 -8.24640 -6.51648 -6.23222 -3.93851 2.11258 2.42776 2.87826 3.00510 3.07808 3.20339 3.26862 3.31261 3.67138 4.18823 4.23229 4.32123 4.44130 4.50276 4.54854 4.67898 4.73549 4.91090 5.05525 5.07364 5.08500 5.12015 5.15201 5.21132 5.25337 5.29247 5.33638 5.37169 5.52178 5.57253 5.59106 5.61411 5.64065 5.74584 5.83762 5.87504 5.88702 5.91702 5.98254 6.11528 6.20688 6.40454 6.57292 6.71166 7.21420 7.58339 7.67277 7.99093 8.33907 8.59024 9.22179 10.84280 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.001833 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.100974 B =15274.786549 C =16782.042529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.741 5.741 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.729 5.729 20 C 0.515 3.485 21 O -0.536 6.536 22 C -0.135 4.135 23 C -0.052 4.052 24 H 0.088 0.912 25 C -0.143 4.143 26 C -0.181 4.181 27 C -0.099 4.099 28 C -0.123 4.123 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.400 0.600 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.202 1.659 -18.521 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.502 5.502 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.382 5.382 20 C 0.302 3.698 21 O -0.412 6.412 22 C -0.175 4.175 23 C -0.071 4.071 24 H 0.106 0.894 25 C -0.161 4.161 26 C -0.199 4.199 27 C -0.137 4.137 28 C -0.160 4.160 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.235 0.765 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.902 3.450 -19.840 29.024 hybrid contribution -0.849 -1.866 2.338 3.110 sum -21.751 1.585 -17.501 27.963 Atomic orbital electron populations 1.22155 0.94908 1.02160 1.02747 1.20866 0.94059 0.97771 0.83296 0.88988 1.22126 0.95433 1.01902 0.98309 1.21252 0.92614 0.97986 0.88425 1.46008 1.07824 1.58653 1.27057 1.20325 0.81486 0.79717 0.86827 1.90711 1.54947 1.44353 1.49041 1.23530 1.06882 1.02521 0.97471 1.85420 0.92140 1.72776 1.33105 1.22909 0.95476 1.40100 1.09864 0.90869 1.25004 0.95060 0.95667 0.97921 1.70025 0.99354 1.42628 1.38241 0.86109 0.78395 0.79256 0.81684 1.19625 1.20567 1.20552 1.46180 1.67983 1.14155 1.09833 1.20713 0.77084 0.87441 0.84569 1.90704 1.49591 1.15929 1.85019 1.21748 1.03385 0.99417 0.92944 1.20805 0.99524 0.93862 0.92894 0.89407 1.23317 0.95622 0.98217 0.98922 1.23266 1.00291 1.00922 0.95411 1.21332 0.99330 0.95779 0.97211 1.22566 0.99620 0.98011 0.95849 0.91488 0.91955 0.92426 0.89502 0.90574 0.91637 0.91601 0.76858 0.89227 0.89245 0.92218 0.76521 0.88787 0.88485 0.85601 0.85998 0.91259 0.90972 0.90794 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.15 1.09 2.57 -67.93 -0.17 0.91 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 C -0.14 -0.93 4.87 -26.73 -0.13 -1.06 16 5 C 0.12 1.31 5.56 -4.04 -0.02 1.28 16 6 N -0.74 -9.24 5.56 -60.29 -0.33 -9.58 16 7 C 0.53 9.72 7.85 -10.98 -0.09 9.63 16 8 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 15 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 N -0.73 -5.25 4.53 -53.81 -0.24 -5.49 16 20 C 0.52 4.73 7.56 -10.98 -0.08 4.64 16 21 O -0.54 -6.84 14.35 5.56 0.08 -6.76 16 22 C -0.14 -0.92 5.12 -27.88 -0.14 -1.06 16 23 C -0.05 -0.42 2.54 -90.72 -0.23 -0.65 16 24 H 0.09 0.79 8.01 -51.93 -0.42 0.38 16 25 C -0.14 -1.42 9.19 -35.70 -0.33 -1.75 16 26 C -0.18 -1.62 10.78 -35.70 -0.38 -2.00 16 27 C -0.10 -0.71 6.81 -26.82 -0.18 -0.89 16 28 C -0.12 -0.79 6.71 -25.01 -0.17 -0.96 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 38 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.40 2.05 8.60 -40.82 -0.35 1.70 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.13 1.46 7.31 -52.49 -0.38 1.08 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 410.82 15.07 6.19 6.19 Total: -1.00 -36.48 410.82 -10.05 -46.53 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.17 Total: 2.05 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.16 Total: -8.34 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.16 Total: -40.45 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.17 Total: -18.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.48 -10.05 -46.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.505 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds