Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47459 * 2 1 4 4 C 1.53002 * 109.46977 * 120.00692 * 2 1 3 5 5 C 1.52998 * 109.46797 * 185.00015 * 4 2 1 6 6 N 1.46508 * 109.46740 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99731 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99892 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.47223 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00112 * 179.97438 * 10 9 7 12 12 H 1.08007 * 120.00080 * 0.02562 * 11 10 9 13 13 C 1.38804 * 120.00122 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00038 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47153 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46833 * 120.00294 * 15 13 11 18 18 H 1.48493 * 109.47139 * 240.00293 * 15 13 11 19 19 N 1.46501 * 109.47027 * 240.00145 * 2 1 3 20 20 C 1.34775 * 120.00077 * 85.00294 * 19 2 1 21 21 O 1.21278 * 120.00160 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99938 * 180.02562 * 20 19 2 23 23 C 1.53000 * 109.46895 * 180.02562 * 22 20 19 24 24 H 1.09002 * 110.34163 * 304.16323 * 23 22 20 25 25 C 1.51104 * 110.38951 * 66.45183 * 23 22 20 26 26 C 1.30527 * 111.10523 * 135.60605 * 25 23 22 27 27 C 1.51104 * 111.10149 * 359.61668 * 26 25 23 28 28 C 1.54632 * 110.48311 * 181.81364 * 23 22 20 29 29 H 1.09000 * 109.46966 * 299.99874 * 1 2 3 30 30 H 1.09001 * 109.46766 * 59.99644 * 1 2 3 31 31 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46880 * 304.99544 * 4 2 1 33 33 H 1.08996 * 109.47374 * 64.99435 * 4 2 1 34 34 H 1.08997 * 109.47576 * 299.99011 * 5 4 2 35 35 H 1.09001 * 109.47647 * 60.00048 * 5 4 2 36 36 H 0.96993 * 120.00095 * 359.97438 * 6 5 4 37 37 H 1.09003 * 109.47066 * 299.99708 * 9 7 6 38 38 H 1.09001 * 109.47430 * 59.99853 * 9 7 6 39 39 H 0.96989 * 119.99934 * 179.97438 * 14 13 11 40 40 H 0.97005 * 120.00195 * 264.99783 * 19 2 1 41 41 H 1.08994 * 109.46984 * 59.99938 * 22 20 19 42 42 H 1.08999 * 109.46960 * 299.99434 * 22 20 19 43 43 H 1.08002 * 124.44506 * 315.33615 * 25 23 22 44 44 H 1.07991 * 124.44863 * 179.73328 * 26 25 23 45 45 H 1.08996 * 110.52393 * 225.02179 * 27 26 25 46 46 H 1.08993 * 110.29475 * 102.72697 * 27 26 25 47 47 H 1.09002 * 111.03487 * 334.53448 * 28 23 22 48 48 H 1.09000 * 111.03782 * 98.43484 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5647 -0.6134 1.3136 6 7 4.0530 -1.3037 2.5101 7 6 5.3740 -1.3399 2.7753 8 8 6.1584 -0.8014 2.0232 9 6 5.8763 -2.0504 4.0057 10 16 7.6802 -1.9238 4.0813 11 6 7.9871 -2.8124 5.5715 12 1 7.1633 -3.2347 6.1279 13 6 9.2877 -2.9707 6.0299 14 7 10.2918 -2.4565 5.3516 15 14 9.6130 -3.9121 7.6102 16 1 8.3252 -4.3852 8.1786 17 1 10.4842 -5.0793 7.3206 18 1 10.2881 -3.0208 8.5873 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0182 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5878 23 6 2.7011 0.2546 -4.7588 24 1 1.7238 0.7120 -4.9133 25 6 3.7458 1.3170 -4.5078 26 6 4.4649 1.5306 -5.5759 27 6 4.0258 0.6396 -6.7146 28 6 3.1703 -0.4617 -6.0464 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -0.2619 2.1369 33 1 1.7515 -1.7716 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3574 36 1 3.4256 -1.7347 3.1113 37 1 5.4419 -1.5906 4.8935 38 1 5.5876 -3.1005 3.9622 39 1 11.2005 -2.5667 5.6721 40 1 2.2490 -1.6318 -1.1527 41 1 1.9759 -1.5505 -3.8326 42 1 3.6479 -1.1213 -3.3987 43 1 3.8771 1.8350 -3.5692 44 1 5.2694 2.2485 -5.6372 45 1 4.8907 0.1997 -7.2110 46 1 3.4266 1.2054 -7.4279 47 1 3.7751 -1.3369 -5.8090 48 1 2.3218 -0.7337 -6.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = -104.288471 kcal Electronic energy + Delta-G solvation = -26089.353810 eV Core-core repulsion = 22268.789041 eV Total energy + Delta-G solvation = -3820.564770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15522 -40.57990 -39.32507 -37.57534 -35.56331 -34.58478 -33.24895 -32.06374 -31.13920 -29.78928 -29.20314 -27.65519 -26.49003 -24.36888 -22.41828 -21.76039 -21.43760 -21.23242 -19.85499 -19.63085 -18.05935 -17.78022 -17.32147 -17.17471 -16.88055 -16.82380 -16.63338 -16.35913 -15.81062 -15.61753 -15.13111 -14.85002 -14.69950 -14.48258 -14.42182 -13.95896 -13.56200 -13.39193 -13.15969 -13.04292 -12.91734 -12.87771 -12.78438 -12.68860 -12.63608 -12.43430 -12.38314 -12.08712 -12.03777 -11.89311 -11.70254 -11.68051 -11.16024 -10.97426 -10.72810 -10.26694 -10.17783 -10.01024 -9.80252 -8.67093 -8.34866 -6.13031 1.27425 1.37269 1.41703 1.47757 1.58580 1.61145 1.72728 2.25117 2.27685 2.29712 2.99446 3.32009 3.62950 3.72425 3.75249 3.82071 3.98148 4.03063 4.04617 4.11460 4.31207 4.35741 4.43236 4.49404 4.51776 4.53844 4.58632 4.61873 4.66707 4.76852 4.82572 4.89445 4.96816 4.99509 5.05362 5.10022 5.14906 5.28204 5.31711 5.42077 5.42348 5.43068 5.58479 5.69675 5.96757 6.20101 6.52049 6.61612 7.06584 7.25860 7.34302 8.74625 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.001833 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.100974 B =15274.786549 C =16782.042529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.063 0.937 4 C -0.121 4.121 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.129 4.129 10 S -0.157 6.157 11 C -0.544 4.544 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.275 1.275 19 N -0.720 5.720 20 C 0.508 3.492 21 O -0.580 6.580 22 C -0.129 4.129 23 C -0.052 4.052 24 H 0.075 0.925 25 C -0.167 4.167 26 C -0.182 4.182 27 C -0.101 4.101 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.419 0.581 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.414 0.586 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.636 -0.942 -17.784 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.159 4.159 5 C -0.003 4.003 6 N -0.365 5.365 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.070 5.930 11 C -0.692 4.692 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.179 1.179 17 H -0.199 1.199 18 H -0.201 1.201 19 N -0.373 5.373 20 C 0.296 3.704 21 O -0.459 6.459 22 C -0.169 4.169 23 C -0.070 4.070 24 H 0.093 0.907 25 C -0.185 4.185 26 C -0.200 4.200 27 C -0.138 4.138 28 C -0.153 4.153 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.257 0.743 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.250 0.750 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.405 0.807 -19.085 30.211 hybrid contribution -0.181 -0.970 2.054 2.278 sum -23.586 -0.163 -17.031 29.093 Atomic orbital electron populations 1.22073 0.93618 1.03163 1.02285 1.20832 0.94941 0.96532 0.83769 0.91923 1.22032 0.91763 1.03733 0.98416 1.21359 0.95531 0.96262 0.87147 1.45702 1.05995 1.57235 1.27521 1.20122 0.83011 0.79276 0.85928 1.90703 1.56765 1.46761 1.50540 1.23370 1.00845 1.04508 0.99253 1.85635 0.99889 1.73460 1.33984 1.23243 0.96195 1.39950 1.09811 0.89747 1.26157 0.94726 0.96581 1.01876 1.70192 0.99932 1.44286 1.40457 0.84887 0.78826 0.77570 0.76542 1.17869 1.19949 1.20061 1.46138 1.67159 1.14709 1.09280 1.21202 0.76471 0.87043 0.85665 1.90688 1.51624 1.17881 1.85752 1.21772 1.04258 0.99576 0.91286 1.20791 0.98113 0.93705 0.94416 0.90729 1.23322 0.97324 0.99609 0.98251 1.23536 0.99737 1.00800 0.95905 1.21396 1.00017 0.95781 0.96579 1.22577 1.00169 0.97738 0.94813 0.90384 0.94050 0.90575 0.87735 0.87690 0.92384 0.93905 0.74322 0.87159 0.86880 0.92026 0.74971 0.85697 0.87912 0.88398 0.85996 0.90188 0.90233 0.89793 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.48 71.98 0.68 -1.04 16 2 C 0.14 2.00 2.57 44.99 0.12 2.11 16 3 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 4 C -0.12 -1.26 4.87 30.59 0.15 -1.11 16 5 C 0.12 2.44 5.56 86.38 0.48 2.92 16 6 N -0.71 -16.06 5.56 -463.05 -2.57 -18.63 16 7 C 0.53 19.01 7.85 87.66 0.69 19.69 16 8 O -0.57 -26.46 15.86 -3.03 -0.05 -26.50 16 9 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 10 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 11 C -0.54 -30.80 9.50 67.96 0.65 -30.15 16 12 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 13 C 0.01 0.63 5.49 84.86 0.47 1.10 16 14 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 15 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 19 N -0.72 -9.61 4.53 -442.54 -2.00 -11.61 16 20 C 0.51 9.41 7.56 87.66 0.66 10.07 16 21 O -0.58 -15.77 14.35 -3.02 -0.04 -15.82 16 22 C -0.13 -1.64 5.12 29.85 0.15 -1.49 16 23 C -0.05 -0.83 2.54 -10.86 -0.03 -0.86 16 24 H 0.07 1.38 8.01 -2.39 -0.02 1.36 16 25 C -0.17 -3.56 9.19 26.26 0.24 -3.32 16 26 C -0.18 -3.36 10.78 26.26 0.28 -3.07 16 27 C -0.10 -1.33 6.81 30.53 0.21 -1.12 16 28 C -0.12 -1.28 6.71 31.71 0.21 -1.07 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.42 6.06 8.47 -92.71 -0.79 5.27 16 37 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 38 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 39 H 0.27 15.39 8.31 -92.72 -0.77 14.62 16 40 H 0.41 3.30 8.60 -92.70 -0.80 2.50 16 41 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.10 2.59 7.31 -2.91 -0.02 2.57 16 44 H 0.12 2.13 8.06 -2.92 -0.02 2.10 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 0.78 7.92 -2.39 -0.02 0.76 16 48 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -84.68 410.82 1.25 -83.43 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.63 Total: 21.26 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.40 Total: -11.83 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -4.29 Total: -85.98 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -0.09 Total: -42.32 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -84.68 1.25 -83.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.861 kcal (2) G-P(sol) polarization free energy of solvation -84.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds