Wall clock time and date at job start Sat Apr 11 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47042 * 2 1 4 4 C 1.53003 * 109.47543 * 120.00248 * 2 1 3 5 5 C 1.52999 * 109.46991 * 185.00330 * 4 2 1 6 6 N 1.46500 * 109.46673 * 179.97438 * 5 4 2 7 7 C 1.34780 * 120.00119 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99505 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00297 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.47143 * 180.02562 * 9 7 6 11 11 C 1.76196 * 99.99799 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00400 * 0.02562 * 11 10 9 13 13 C 1.38804 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00129 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99780 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47035 * 60.00307 * 15 13 11 17 17 H 1.48505 * 109.46754 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47373 * 299.99945 * 15 13 11 19 19 N 1.46506 * 109.47135 * 240.00518 * 2 1 3 20 20 C 1.34770 * 119.99967 * 84.99399 * 19 2 1 21 21 O 1.21280 * 120.00330 * 0.02562 * 20 19 2 22 22 C 1.50703 * 119.99715 * 179.97438 * 20 19 2 23 23 C 1.52994 * 119.30075 * 250.52162 * 22 20 19 24 24 C 1.52998 * 60.38115 * 248.69772 * 23 22 20 25 25 H 1.09002 * 119.29791 * 111.31096 * 24 23 22 26 26 C 1.54265 * 118.19629 * 266.38599 * 24 23 22 27 27 C 1.55466 * 103.92198 * 88.58229 * 26 24 23 28 28 C 1.54261 * 117.41191 * 46.18275 * 22 20 19 29 29 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47248 * 299.99425 * 1 2 3 31 31 H 1.08995 * 109.47625 * 60.00013 * 1 2 3 32 32 H 1.09005 * 109.46783 * 305.00234 * 4 2 1 33 33 H 1.09002 * 109.46669 * 64.99788 * 4 2 1 34 34 H 1.09002 * 109.46784 * 299.99669 * 5 4 2 35 35 H 1.09000 * 109.47348 * 60.00142 * 5 4 2 36 36 H 0.97000 * 120.00009 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47250 * 299.99981 * 9 7 6 38 38 H 1.09000 * 109.46934 * 60.00487 * 9 7 6 39 39 H 0.96996 * 120.00465 * 179.97438 * 14 13 11 40 40 H 0.96997 * 119.99677 * 264.99777 * 19 2 1 41 41 H 1.09006 * 117.46327 * 141.09709 * 23 22 20 42 42 H 1.09007 * 117.46251 * 356.29437 * 23 22 20 43 43 H 1.09003 * 110.48583 * 206.46491 * 26 24 23 44 44 H 1.09008 * 110.48838 * 329.10463 * 26 24 23 45 45 H 1.09008 * 110.50898 * 203.27072 * 27 26 24 46 46 H 1.08997 * 111.40882 * 79.80148 * 27 26 24 47 47 H 1.09004 * 110.48542 * 235.04770 * 28 22 20 48 48 H 1.08999 * 110.48952 * 357.68593 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0532 -1.3033 2.5100 7 6 5.3742 -1.3394 2.7753 8 8 6.1585 -0.8001 2.0236 9 6 5.8765 -2.0498 4.0056 10 16 7.6804 -1.9218 4.0820 11 6 7.9874 -2.8105 5.5721 12 1 7.1638 -3.2336 6.1280 13 6 9.2879 -2.9678 6.0309 14 7 10.2918 -2.4527 5.3532 15 14 9.6134 -3.9106 7.6104 16 1 9.1122 -5.3013 7.4690 17 1 11.0735 -3.9351 7.8802 18 1 8.9133 -3.2444 8.7379 19 7 2.0183 -0.6905 -1.1963 20 6 2.1469 -0.0181 -2.3572 21 8 1.8588 1.1587 -2.4115 22 6 2.6498 -0.7283 -3.5875 23 6 4.0442 -0.3995 -4.1245 24 6 2.8084 0.0094 -4.9285 25 1 2.5617 1.0666 -5.0265 26 6 2.3001 -0.9516 -6.0230 27 6 1.3195 -1.8927 -5.2683 28 6 2.0371 -2.1063 -3.9125 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0727 0.4258 35 1 3.8532 0.4371 1.3573 36 1 3.4259 -1.7350 3.1109 37 1 5.4422 -1.5901 4.8934 38 1 5.5880 -3.1000 3.9621 39 1 11.2006 -2.5622 5.6740 40 1 2.2490 -1.6317 -1.1527 41 1 4.6428 -1.2257 -4.5082 42 1 4.6022 0.3915 -3.6234 43 1 1.7651 -0.4002 -6.7963 44 1 3.1301 -1.5098 -6.4562 45 1 1.2109 -2.8376 -5.8009 46 1 0.3483 -1.4202 -5.1212 47 1 2.8199 -2.8586 -4.0094 48 1 1.3212 -2.3964 -3.1435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:35 Heat of formation + Delta-G solvation = -68.041815 kcal Electronic energy + Delta-G solvation = -26495.853999 eV Core-core repulsion = 22676.861003 eV Total energy + Delta-G solvation = -3818.992997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91109 -39.31328 -38.68032 -36.67231 -34.44662 -32.43854 -32.09596 -31.93875 -30.13845 -28.68039 -28.14343 -25.50267 -24.37895 -23.28344 -22.52866 -21.31023 -20.70070 -20.32722 -19.53920 -17.86857 -17.45999 -16.75399 -16.24868 -16.03281 -15.66213 -15.40991 -15.06773 -14.81427 -14.73277 -14.15779 -13.96151 -13.83662 -13.75492 -13.57737 -13.38150 -13.20018 -12.93142 -12.59341 -12.37998 -12.21621 -12.15905 -11.64740 -11.57606 -11.55443 -11.47511 -11.37639 -11.25927 -11.05536 -11.04661 -10.77603 -10.75173 -10.09369 -9.90455 -9.83568 -9.47133 -9.35200 -9.07332 -8.90569 -8.24981 -6.51136 -6.22290 -3.93147 2.27896 2.79755 3.01002 3.08585 3.22641 3.26433 3.26678 3.29922 3.67537 4.01170 4.19661 4.21852 4.32272 4.43203 4.48516 4.57558 4.73028 4.79346 4.91238 5.00762 5.06018 5.07695 5.12664 5.13798 5.21530 5.25652 5.29618 5.36659 5.38981 5.42718 5.47554 5.57582 5.61260 5.62328 5.67564 5.75574 5.80604 5.84134 5.88161 5.92448 5.96793 6.12029 6.21130 6.58041 7.22023 7.58257 7.68078 7.98170 8.34078 8.59804 9.22720 10.85066 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.001866 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.060619 B =15005.744543 C =15891.031432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.721 5.721 20 C 0.560 3.440 21 O -0.540 6.540 22 C -0.183 4.183 23 C -0.120 4.120 24 C -0.128 4.128 25 H 0.119 0.881 26 C -0.097 4.097 27 C -0.122 4.122 28 C -0.086 4.086 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.401 0.599 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.999 0.020 -18.225 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.373 5.373 20 C 0.347 3.653 21 O -0.416 6.416 22 C -0.186 4.186 23 C -0.157 4.157 24 C -0.147 4.147 25 H 0.137 0.863 26 C -0.135 4.135 27 C -0.160 4.160 28 C -0.123 4.123 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.236 0.764 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.705 1.817 -19.523 29.250 hybrid contribution -0.928 -1.871 2.371 3.159 sum -22.633 -0.053 -17.153 28.399 Atomic orbital electron populations 1.22159 0.94824 1.02223 1.02787 1.20899 0.94127 0.97775 0.83189 0.88965 1.22125 0.95480 1.01914 0.98219 1.21254 0.92592 0.98007 0.88460 1.46003 1.07830 1.58626 1.27058 1.20324 0.81481 0.79727 0.86821 1.90711 1.54954 1.44328 1.49060 1.23530 1.06890 1.02517 0.97465 1.85413 0.92148 1.72735 1.33067 1.22825 0.95450 1.40254 1.09946 0.90978 1.24996 0.95046 0.95652 0.97901 1.70002 0.99414 1.42529 1.38315 0.86223 0.77376 0.79926 0.81959 1.19941 1.20802 1.19945 1.46034 1.67592 1.14243 1.09400 1.19328 0.76440 0.86291 0.83250 1.90697 1.50015 1.15951 1.84980 1.22385 1.03046 0.98407 0.94802 1.23145 0.88919 1.03199 1.00463 1.23379 1.01194 0.99908 0.90201 0.86314 1.22106 0.98620 0.96307 0.96446 1.22775 0.98675 0.99525 0.95016 1.21922 0.99373 0.93380 0.97654 0.92369 0.91383 0.91963 0.89410 0.90540 0.91589 0.91585 0.76863 0.89232 0.89249 0.92111 0.76380 0.87810 0.87670 0.90955 0.90773 0.90975 0.91139 0.90427 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 2 C 0.14 1.16 2.57 -67.93 -0.17 0.99 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 C -0.14 -0.96 4.87 -26.73 -0.13 -1.10 16 5 C 0.12 1.34 5.56 -4.04 -0.02 1.31 16 6 N -0.74 -9.36 5.56 -60.29 -0.33 -9.69 16 7 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 8 O -0.52 -11.78 15.86 5.55 0.09 -11.69 16 9 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 15 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.72 -5.92 4.37 -53.80 -0.23 -6.16 16 20 C 0.56 5.96 7.37 -10.99 -0.08 5.87 16 21 O -0.54 -7.72 16.45 5.56 0.09 -7.63 16 22 C -0.18 -1.55 2.67 -154.55 -0.41 -1.96 16 23 C -0.12 -0.99 9.87 -26.74 -0.26 -1.25 16 24 C -0.13 -1.05 6.54 -89.50 -0.58 -1.64 16 25 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 26 C -0.10 -0.59 6.65 -24.76 -0.16 -0.75 16 27 C -0.12 -0.70 6.94 -24.43 -0.17 -0.87 16 28 C -0.09 -0.53 6.20 -25.08 -0.16 -0.68 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.80 7.75 -51.93 -0.40 0.39 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.40 2.57 8.18 -40.82 -0.33 2.24 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 45 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.40 7.66 -51.93 -0.40 0.00 16 LS Contribution 410.65 15.07 6.19 6.19 Total: -1.00 -36.50 410.65 -10.36 -46.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.18 Total: 2.00 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.47 Total: -6.92 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.16 Total: -41.25 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.18 Total: -19.32 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.50 -10.36 -46.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.178 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds