Wall clock time and date at job start Sat Apr 11 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47042 * 2 1 4 4 C 1.53003 * 109.47543 * 120.00248 * 2 1 3 5 5 C 1.52999 * 109.46991 * 185.00330 * 4 2 1 6 6 N 1.46500 * 109.46673 * 179.97438 * 5 4 2 7 7 C 1.34780 * 120.00119 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99505 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00297 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.47143 * 180.02562 * 9 7 6 11 11 C 1.76196 * 99.99799 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00400 * 0.02562 * 11 10 9 13 13 C 1.38804 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00129 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99780 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47035 * 60.00307 * 15 13 11 17 17 H 1.48505 * 109.46754 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47373 * 299.99945 * 15 13 11 19 19 N 1.46506 * 109.47135 * 240.00518 * 2 1 3 20 20 C 1.34770 * 119.99967 * 84.99399 * 19 2 1 21 21 O 1.21280 * 120.00330 * 0.02562 * 20 19 2 22 22 C 1.50703 * 119.99715 * 179.97438 * 20 19 2 23 23 C 1.52994 * 119.30075 * 250.52162 * 22 20 19 24 24 C 1.52998 * 60.38115 * 248.69772 * 23 22 20 25 25 H 1.09002 * 119.29791 * 111.31096 * 24 23 22 26 26 C 1.54265 * 118.19629 * 266.38599 * 24 23 22 27 27 C 1.55466 * 103.92198 * 88.58229 * 26 24 23 28 28 C 1.54261 * 117.41191 * 46.18275 * 22 20 19 29 29 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47248 * 299.99425 * 1 2 3 31 31 H 1.08995 * 109.47625 * 60.00013 * 1 2 3 32 32 H 1.09005 * 109.46783 * 305.00234 * 4 2 1 33 33 H 1.09002 * 109.46669 * 64.99788 * 4 2 1 34 34 H 1.09002 * 109.46784 * 299.99669 * 5 4 2 35 35 H 1.09000 * 109.47348 * 60.00142 * 5 4 2 36 36 H 0.97000 * 120.00009 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47250 * 299.99981 * 9 7 6 38 38 H 1.09000 * 109.46934 * 60.00487 * 9 7 6 39 39 H 0.96996 * 120.00465 * 179.97438 * 14 13 11 40 40 H 0.96997 * 119.99677 * 264.99777 * 19 2 1 41 41 H 1.09006 * 117.46327 * 141.09709 * 23 22 20 42 42 H 1.09007 * 117.46251 * 356.29437 * 23 22 20 43 43 H 1.09003 * 110.48583 * 206.46491 * 26 24 23 44 44 H 1.09008 * 110.48838 * 329.10463 * 26 24 23 45 45 H 1.09008 * 110.50898 * 203.27072 * 27 26 24 46 46 H 1.08997 * 111.40882 * 79.80148 * 27 26 24 47 47 H 1.09004 * 110.48542 * 235.04770 * 28 22 20 48 48 H 1.08999 * 110.48952 * 357.68593 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0532 -1.3033 2.5100 7 6 5.3742 -1.3394 2.7753 8 8 6.1585 -0.8001 2.0236 9 6 5.8765 -2.0498 4.0056 10 16 7.6804 -1.9218 4.0820 11 6 7.9874 -2.8105 5.5721 12 1 7.1638 -3.2336 6.1280 13 6 9.2879 -2.9678 6.0309 14 7 10.2918 -2.4527 5.3532 15 14 9.6134 -3.9106 7.6104 16 1 9.1122 -5.3013 7.4690 17 1 11.0735 -3.9351 7.8802 18 1 8.9133 -3.2444 8.7379 19 7 2.0183 -0.6905 -1.1963 20 6 2.1469 -0.0181 -2.3572 21 8 1.8588 1.1587 -2.4115 22 6 2.6498 -0.7283 -3.5875 23 6 4.0442 -0.3995 -4.1245 24 6 2.8084 0.0094 -4.9285 25 1 2.5617 1.0666 -5.0265 26 6 2.3001 -0.9516 -6.0230 27 6 1.3195 -1.8927 -5.2683 28 6 2.0371 -2.1063 -3.9125 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0727 0.4258 35 1 3.8532 0.4371 1.3573 36 1 3.4259 -1.7350 3.1109 37 1 5.4422 -1.5901 4.8934 38 1 5.5880 -3.1000 3.9621 39 1 11.2006 -2.5622 5.6740 40 1 2.2490 -1.6317 -1.1527 41 1 4.6428 -1.2257 -4.5082 42 1 4.6022 0.3915 -3.6234 43 1 1.7651 -0.4002 -6.7963 44 1 3.1301 -1.5098 -6.4562 45 1 1.2109 -2.8376 -5.8009 46 1 0.3483 -1.4202 -5.1212 47 1 2.8199 -2.8586 -4.0094 48 1 1.3212 -2.3964 -3.1435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:34 Heat of formation + Delta-G solvation = -93.203987 kcal Electronic energy + Delta-G solvation = -26496.945113 eV Core-core repulsion = 22676.861003 eV Total energy + Delta-G solvation = -3820.084110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63308 -40.63267 -39.46813 -37.57916 -35.60965 -34.57947 -32.90195 -32.55971 -31.36764 -29.31792 -29.13592 -27.64649 -25.13237 -24.10562 -23.15273 -22.12614 -21.59606 -21.26923 -20.29697 -19.80227 -18.19918 -17.75976 -17.50085 -17.23551 -16.87222 -16.65682 -16.34001 -15.87010 -15.80262 -15.39876 -15.17232 -14.81611 -14.46601 -14.45349 -14.40909 -14.15226 -13.95812 -13.63707 -13.55713 -13.16562 -13.03840 -12.86261 -12.83177 -12.66217 -12.45792 -12.41530 -12.05540 -12.01805 -11.96197 -11.87195 -11.73637 -11.37940 -11.12373 -10.97823 -10.71178 -10.70347 -10.27174 -10.21588 -10.07082 -8.66741 -8.33930 -6.12392 1.27393 1.44558 1.46797 1.47600 1.57118 1.61133 2.10649 2.25468 2.29551 2.60540 3.00083 3.32306 3.44473 3.61963 3.65050 3.76801 3.80931 3.90537 4.02315 4.08062 4.21778 4.31085 4.38904 4.40034 4.45333 4.47592 4.51912 4.60037 4.61441 4.70936 4.78114 4.79595 4.86509 4.94466 4.97925 5.02876 5.10911 5.14589 5.17369 5.24705 5.28350 5.41692 5.42446 5.44634 5.51243 6.20144 6.50015 6.52646 7.07109 7.21191 7.25730 8.75000 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.001866 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.060619 B =15005.744543 C =15891.031432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.121 4.121 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.128 4.128 10 S -0.156 6.156 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.262 1.262 19 N -0.710 5.710 20 C 0.552 3.448 21 O -0.586 6.586 22 C -0.188 4.188 23 C -0.122 4.122 24 C -0.135 4.135 25 H 0.097 0.903 26 C -0.093 4.093 27 C -0.120 4.120 28 C -0.081 4.081 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.419 0.581 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.413 0.587 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.475 -2.702 -17.083 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.159 4.159 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.071 5.929 11 C -0.694 4.694 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.187 1.187 19 N -0.361 5.361 20 C 0.340 3.660 21 O -0.467 6.467 22 C -0.191 4.191 23 C -0.160 4.160 24 C -0.154 4.154 25 H 0.116 0.884 26 C -0.130 4.130 27 C -0.157 4.157 28 C -0.118 4.118 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.257 0.743 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.250 0.750 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.109 0.891 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.254 -0.949 -18.359 30.434 hybrid contribution -0.261 -0.943 1.966 2.196 sum -24.515 -1.892 -16.393 29.552 Atomic orbital electron populations 1.22081 0.93372 1.03314 1.02398 1.20919 0.95149 0.96574 0.83519 0.91791 1.22037 0.91832 1.03766 0.98265 1.21348 0.95495 0.96328 0.87157 1.45689 1.06029 1.57222 1.27479 1.20130 0.82986 0.79283 0.85937 1.90704 1.56767 1.46724 1.50557 1.23368 1.00866 1.04500 0.99219 1.85631 0.99877 1.73430 1.33972 1.23175 0.96205 1.40097 1.09889 0.89745 1.26153 0.94709 0.96567 1.01864 1.70178 0.99931 1.44206 1.40512 0.84996 0.77321 0.78683 0.76943 1.18502 1.20532 1.18673 1.46001 1.66558 1.14693 1.08874 1.19783 0.75894 0.85890 0.84428 1.90670 1.52230 1.17985 1.85794 1.22514 1.02976 0.99748 0.93901 1.23156 0.89026 1.03287 1.00501 1.23434 1.01177 0.99486 0.91285 0.88449 1.22134 0.99139 0.95963 0.95787 1.22781 0.98006 1.00168 0.94790 1.21976 0.99794 0.91886 0.98170 0.90436 0.89959 0.94226 0.87351 0.87624 0.92562 0.93801 0.74293 0.87137 0.86874 0.92024 0.74998 0.85939 0.89642 0.90511 0.89525 0.89019 0.91857 0.89103 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.48 71.98 0.68 -1.15 16 2 C 0.14 2.13 2.57 44.99 0.12 2.24 16 3 H 0.06 1.35 7.58 -2.39 -0.02 1.33 16 4 C -0.12 -1.31 4.87 30.59 0.15 -1.16 16 5 C 0.12 2.49 5.56 86.38 0.48 2.97 16 6 N -0.71 -16.19 5.56 -463.06 -2.57 -18.76 16 7 C 0.53 19.07 7.85 87.65 0.69 19.76 16 8 O -0.57 -26.52 15.86 -3.04 -0.05 -26.57 16 9 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 10 S -0.16 -8.64 20.57 -56.49 -1.16 -9.80 16 11 C -0.55 -30.87 9.50 67.96 0.65 -30.23 16 12 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 13 C 0.01 0.67 5.49 84.86 0.47 1.13 16 14 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 15 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 N -0.71 -11.11 4.37 -442.53 -1.93 -13.05 16 20 C 0.55 12.10 7.37 87.66 0.65 12.74 16 21 O -0.59 -17.95 16.45 -3.03 -0.05 -18.00 16 22 C -0.19 -3.18 2.67 -52.21 -0.14 -3.32 16 23 C -0.12 -2.08 9.87 30.59 0.30 -1.78 16 24 C -0.14 -2.29 6.54 -10.07 -0.07 -2.35 16 25 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 26 C -0.09 -1.02 6.65 31.87 0.21 -0.81 16 27 C -0.12 -1.13 6.94 32.09 0.22 -0.91 16 28 C -0.08 -0.84 6.20 31.67 0.20 -0.65 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.42 6.10 8.47 -92.71 -0.79 5.31 16 37 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 38 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.41 4.49 8.18 -92.71 -0.76 3.73 16 41 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.08 0.70 7.66 -2.39 -0.02 0.68 16 Total: -1.00 -84.51 410.65 1.01 -83.50 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.58 Total: 21.18 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.04 Total: -7.98 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -4.22 Total: -87.52 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -0.10 Total: -44.57 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -84.51 1.01 -83.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.701 kcal (2) G-P(sol) polarization free energy of solvation -84.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds