Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46879 * 2 1 4 4 C 1.52995 * 109.47080 * 119.99952 * 2 1 3 5 5 C 1.53001 * 109.47014 * 185.00246 * 4 2 1 6 6 N 1.46502 * 109.46818 * 180.02562 * 5 4 2 7 7 C 1.34776 * 119.99551 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00376 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99716 * 179.97438 * 7 6 5 10 10 S 1.81007 * 109.47027 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99993 * 180.02562 * 10 9 7 12 12 H 1.08006 * 120.00118 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99841 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00385 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99634 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47269 * 59.99877 * 15 13 11 17 17 H 1.48501 * 109.46778 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47029 * 299.99521 * 15 13 11 19 19 N 1.46498 * 109.47359 * 240.00443 * 2 1 3 20 20 C 1.34784 * 120.00131 * 84.99504 * 19 2 1 21 21 O 1.21278 * 119.99816 * 0.02562 * 20 19 2 22 22 C 1.50700 * 119.99821 * 179.97438 * 20 19 2 23 23 H 1.08996 * 109.64322 * 299.58550 * 22 20 19 24 24 C 1.53026 * 109.63999 * 60.00366 * 22 20 19 25 25 C 1.50072 * 110.14449 * 169.32992 * 24 22 20 26 26 C 1.29445 * 124.07465 * 342.86958 * 25 24 22 27 27 C 1.50062 * 124.07609 * 0.46821 * 26 25 24 28 28 C 1.53020 * 110.14863 * 342.86851 * 27 26 25 29 29 H 1.09001 * 109.47138 * 60.00538 * 1 2 3 30 30 H 1.09007 * 109.46798 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47514 * 299.99857 * 1 2 3 32 32 H 1.08994 * 109.47140 * 305.00529 * 4 2 1 33 33 H 1.09007 * 109.46790 * 65.00575 * 4 2 1 34 34 H 1.09007 * 109.47034 * 300.00004 * 5 4 2 35 35 H 1.08998 * 109.47105 * 59.99899 * 5 4 2 36 36 H 0.96992 * 120.00485 * 0.02562 * 6 5 4 37 37 H 1.08995 * 109.47430 * 299.99433 * 9 7 6 38 38 H 1.08998 * 109.47201 * 60.00232 * 9 7 6 39 39 H 0.96989 * 119.99777 * 180.02562 * 14 13 11 40 40 H 0.97001 * 119.99937 * 264.99803 * 19 2 1 41 41 H 1.09000 * 109.35986 * 289.53597 * 24 22 20 42 42 H 1.09002 * 109.36098 * 49.12700 * 24 22 20 43 43 H 1.07997 * 117.96190 * 162.84605 * 25 24 22 44 44 H 1.08000 * 117.95950 * 180.49325 * 26 25 24 45 45 H 1.09002 * 109.35957 * 222.65996 * 27 26 25 46 46 H 1.09000 * 109.24676 * 103.00622 * 27 26 25 47 47 H 1.08999 * 109.64487 * 289.74759 * 28 27 26 48 48 H 1.09002 * 109.81509 * 169.22112 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5096 7 6 5.3740 -1.3397 2.7752 8 8 6.1584 -0.7998 2.0240 9 6 5.8763 -2.0501 4.0056 10 16 7.6803 -1.9225 4.0818 11 6 7.9874 -2.8125 5.5712 12 1 7.1637 -3.2359 6.1269 13 6 9.2878 -2.9694 6.0303 14 7 10.2917 -2.4538 5.3528 15 14 9.6133 -3.9136 7.6090 16 1 9.1130 -5.3044 7.4661 17 1 11.0734 -3.9375 7.8792 18 1 8.9125 -3.2488 8.7369 19 7 2.0184 -0.6905 -1.1962 20 6 2.1471 -0.0181 -2.3572 21 8 1.8590 1.1587 -2.4115 22 6 2.6500 -0.7283 -3.5875 23 1 3.6524 -1.1148 -3.4034 24 6 1.7090 -1.8838 -3.9352 25 6 2.0445 -2.4338 -5.2906 26 6 2.7605 -1.8092 -6.1697 27 6 3.3634 -0.4523 -5.9527 28 6 2.6822 0.2446 -4.7730 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6053 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0727 0.4259 35 1 3.8531 0.4371 1.3573 36 1 3.4260 -1.7364 3.1101 37 1 5.4415 -1.5909 4.8933 38 1 5.5884 -3.1005 3.9617 39 1 11.2004 -2.5638 5.6735 40 1 2.2491 -1.6317 -1.1527 41 1 1.8136 -2.6719 -3.1895 42 1 0.6800 -1.5242 -3.9359 43 1 1.6654 -3.4116 -5.5484 44 1 2.9344 -2.2947 -7.1186 45 1 3.2326 0.1493 -6.8522 46 1 4.4274 -0.5613 -5.7425 47 1 1.6643 0.5205 -5.0484 48 1 3.2423 1.1385 -4.4982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075676007.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = -112.382998 kcal Electronic energy + Delta-G solvation = -26317.825817 eV Core-core repulsion = 22496.910042 eV Total energy + Delta-G solvation = -3820.915775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34745 -40.58530 -38.86409 -37.54732 -35.59054 -34.57781 -33.25118 -31.98832 -31.64249 -30.95648 -29.19820 -27.64499 -25.27950 -24.37600 -23.75337 -22.16889 -21.54200 -21.31819 -19.83019 -18.87735 -18.33217 -17.76449 -17.46533 -17.21831 -16.87099 -16.68842 -16.40171 -16.00863 -15.71871 -15.29867 -15.08266 -14.78081 -14.67582 -14.47920 -14.41736 -14.28442 -14.02399 -13.62641 -13.54894 -13.21486 -13.16421 -13.15840 -12.93174 -12.86054 -12.65887 -12.43470 -12.38862 -11.98911 -11.93508 -11.73757 -11.70861 -11.32834 -11.12259 -10.96757 -10.67996 -10.26917 -10.18795 -10.03977 -9.87751 -8.66535 -8.33861 -6.12280 1.27667 1.41715 1.44621 1.47825 1.57318 1.61684 1.63575 2.20250 2.26229 2.30223 3.00163 3.32623 3.56477 3.69379 3.76736 3.80524 3.87466 4.04684 4.08833 4.22878 4.29237 4.31888 4.39815 4.44005 4.47887 4.49482 4.52430 4.60048 4.62453 4.72194 4.82384 4.89355 4.91332 4.99008 5.03887 5.06142 5.14625 5.25263 5.30764 5.32764 5.42133 5.43625 5.56020 5.77002 6.05932 6.20259 6.52346 6.55351 7.07238 7.26089 7.26649 8.75073 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.001833 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.582440 B =15272.680177 C =16297.229276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.122 4.122 5 C 0.120 3.880 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.128 4.128 10 S -0.157 6.157 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.262 1.262 19 N -0.715 5.715 20 C 0.517 3.483 21 O -0.582 6.582 22 C -0.107 4.107 23 H 0.106 0.894 24 C -0.075 4.075 25 C -0.161 4.161 26 C -0.163 4.163 27 C -0.093 4.093 28 C -0.099 4.099 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.419 0.581 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.413 0.587 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.491 -2.204 -16.753 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.071 5.929 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.187 1.187 19 N -0.367 5.367 20 C 0.305 3.695 21 O -0.462 6.462 22 C -0.128 4.128 23 H 0.124 0.876 24 C -0.112 4.112 25 C -0.179 4.179 26 C -0.181 4.181 27 C -0.130 4.130 28 C -0.137 4.137 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.257 0.743 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.250 0.750 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.250 -0.447 -18.043 30.229 hybrid contribution -0.245 -1.251 1.735 2.153 sum -24.495 -1.699 -16.308 29.476 Atomic orbital electron populations 1.22080 0.93490 1.03256 1.02350 1.20881 0.95051 0.96616 0.83610 0.91722 1.22036 0.91778 1.03759 0.98370 1.21370 0.95530 0.96343 0.87152 1.45694 1.05995 1.57161 1.27579 1.20122 0.83017 0.79289 0.85916 1.90705 1.56766 1.46714 1.50579 1.23370 1.00833 1.04504 0.99264 1.85632 0.99915 1.73367 1.34032 1.23175 0.96203 1.40033 1.09923 0.89745 1.26153 0.94719 0.96577 1.01861 1.70181 0.99928 1.44215 1.40521 0.84996 0.77315 0.78681 0.76955 1.18508 1.20550 1.18659 1.46106 1.66812 1.14670 1.09144 1.20983 0.76408 0.86727 0.85392 1.90681 1.51779 1.17934 1.85778 1.21434 1.01841 0.97357 0.92215 0.87637 1.20407 0.98407 0.95983 0.96442 1.22131 1.00166 1.00500 0.95091 1.22239 0.99308 0.96645 0.99860 1.20502 0.99873 0.94368 0.98213 1.21364 1.01292 0.97185 0.93827 0.94087 0.90490 0.90220 0.87568 0.87659 0.92431 0.93761 0.74315 0.87150 0.86896 0.92030 0.74983 0.88482 0.90657 0.86113 0.86704 0.89930 0.90458 0.92191 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.48 71.98 0.68 -1.00 16 2 C 0.14 1.95 2.57 44.99 0.12 2.07 16 3 H 0.06 1.28 7.58 -2.39 -0.02 1.26 16 4 C -0.12 -1.21 4.87 30.59 0.15 -1.06 16 5 C 0.12 2.38 5.56 86.38 0.48 2.86 16 6 N -0.71 -15.84 5.56 -463.04 -2.57 -18.41 16 7 C 0.53 18.87 7.85 87.66 0.69 19.56 16 8 O -0.57 -26.30 15.86 -3.05 -0.05 -26.35 16 9 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 10 S -0.16 -8.63 20.57 -56.49 -1.16 -9.80 16 11 C -0.55 -30.80 9.50 67.95 0.65 -30.16 16 12 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 13 C 0.01 0.65 5.49 84.86 0.47 1.12 16 14 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 15 Si 1.00 43.11 29.55 68.60 2.03 45.13 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 N -0.71 -9.73 4.44 -442.54 -1.96 -11.70 16 20 C 0.52 10.03 7.11 87.66 0.62 10.66 16 21 O -0.58 -16.37 15.57 -3.02 -0.05 -16.41 16 22 C -0.11 -1.61 2.57 -11.40 -0.03 -1.64 16 23 H 0.11 1.51 8.12 -2.39 -0.02 1.49 16 24 C -0.08 -0.79 5.27 29.66 0.16 -0.63 16 25 C -0.16 -1.74 9.80 27.04 0.27 -1.47 16 26 C -0.16 -1.92 9.80 27.03 0.27 -1.66 16 27 C -0.09 -1.22 6.11 29.66 0.18 -1.04 16 28 C -0.10 -1.68 4.71 30.73 0.14 -1.53 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.06 1.27 7.75 -2.38 -0.02 1.25 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.42 5.93 8.47 -92.71 -0.79 5.14 16 37 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 38 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 39 H 0.27 15.46 8.31 -92.72 -0.77 14.69 16 40 H 0.41 3.50 8.26 -92.71 -0.77 2.73 16 41 H 0.10 0.62 7.89 -2.39 -0.02 0.60 16 42 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 43 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 48 H 0.06 1.18 7.89 -2.39 -0.02 1.16 16 Total: -1.00 -83.60 408.80 1.19 -82.40 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.60 Total: 19.20 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.27 Total: -8.39 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -4.25 Total: -85.79 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.10 Total: -42.76 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -83.60 1.19 -82.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075676007.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.979 kcal (2) G-P(sol) polarization free energy of solvation -83.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds