Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 N 1.46501 * 109.46843 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99967 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99932 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47103 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00059 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00520 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99953 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47043 * 90.00367 * 15 13 11 17 17 H 1.48499 * 109.47308 * 210.00272 * 15 13 11 18 18 H 1.48499 * 109.46951 * 330.00634 * 15 13 11 19 19 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 84.72116 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 H 1.09001 * 115.54758 * 34.32883 * 22 20 19 24 24 C 1.52998 * 117.49753 * 248.62813 * 22 20 19 25 25 C 1.52992 * 117.50304 * 180.02562 * 22 20 19 26 26 H 1.09007 * 117.49555 * 0.02562 * 25 22 20 27 27 C 1.52997 * 117.50273 * 215.00513 * 25 22 20 28 28 C 1.52995 * 117.50225 * 128.74405 * 27 25 22 29 29 C 1.52999 * 117.49805 * 60.08109 * 27 25 22 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 34 34 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 35 35 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 36 36 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 37 37 H 0.96997 * 120.00090 * 0.02562 * 6 5 4 38 38 H 1.09002 * 109.47320 * 300.00084 * 9 7 6 39 39 H 1.08998 * 109.47063 * 60.00511 * 9 7 6 40 40 H 0.96992 * 120.00530 * 179.97438 * 14 13 11 41 41 H 0.97001 * 120.00384 * 265.00562 * 19 2 1 42 42 H 1.08998 * 117.50110 * 359.97438 * 24 22 20 43 43 H 1.09004 * 117.49475 * 145.02172 * 24 22 20 44 44 H 1.09002 * 115.54898 * 274.42026 * 27 25 22 45 45 H 1.08997 * 117.50168 * 0.02562 * 28 27 25 46 46 H 1.08999 * 117.49878 * 145.02163 * 28 27 25 47 47 H 1.09004 * 117.50253 * 214.97774 * 29 27 25 48 48 H 1.08995 * 117.50249 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3396 2.7753 8 8 6.1585 -0.8005 2.0236 9 6 5.8764 -2.0500 4.0057 10 16 7.6803 -1.9223 4.0820 11 6 7.9874 -2.8122 5.5714 12 1 7.1637 -3.2357 6.1271 13 6 9.2878 -2.9699 6.0300 14 7 10.2918 -2.4543 5.3525 15 14 9.6134 -3.9128 7.6094 16 1 9.8140 -5.3503 7.2953 17 1 10.8323 -3.3746 8.2650 18 1 8.4526 -3.7632 8.5234 19 7 2.0184 -0.6906 -1.1962 20 6 2.1417 -0.0196 -2.3585 21 8 1.8533 1.1572 -2.4129 22 6 2.6382 -0.7314 -3.5905 23 1 2.3401 -1.7758 -3.6822 24 6 4.0176 -0.3405 -4.1246 25 6 2.7568 0.0853 -4.8788 26 1 2.4762 1.1377 -4.8351 27 6 2.4474 -0.6262 -6.1974 28 6 1.4519 0.0449 -7.1457 29 6 1.0447 -1.2116 -6.3721 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4259 36 1 3.8532 0.4369 1.3573 37 1 3.4259 -1.7350 3.1110 38 1 5.4421 -1.5902 4.8935 39 1 5.5877 -3.1002 3.9622 40 1 11.2006 -2.5642 5.6732 41 1 2.2490 -1.6318 -1.1527 42 1 4.5658 0.4318 -3.5852 43 1 4.6273 -1.1279 -4.5679 44 1 3.2792 -1.1709 -6.6441 45 1 1.0177 0.9936 -6.8304 46 1 1.6286 -0.0584 -8.2163 47 1 0.9535 -2.1411 -6.9342 48 1 0.3421 -1.0894 -5.5478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075677897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = -66.870581 kcal Electronic energy + Delta-G solvation = -25918.670932 eV Core-core repulsion = 22099.728724 eV Total energy + Delta-G solvation = -3818.942208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.27228 -40.58835 -39.10605 -37.63885 -35.85382 -35.56289 -34.57876 -32.77593 -31.31719 -29.22088 -27.64817 -26.24607 -24.53855 -24.10226 -23.25125 -22.20700 -21.60758 -21.45008 -20.63115 -19.82604 -18.42074 -17.79800 -17.42256 -17.19916 -16.87277 -16.69744 -16.56054 -15.98341 -15.88206 -15.64670 -15.32261 -14.95560 -14.77217 -14.47403 -14.43654 -14.09025 -13.58969 -13.54400 -13.40410 -13.16048 -13.03265 -12.88686 -12.64888 -12.55086 -12.44932 -12.40782 -12.31283 -11.96629 -11.88831 -11.82088 -11.71847 -11.13722 -11.05757 -10.96742 -10.87886 -10.55554 -10.26631 -10.20426 -10.05863 -8.66463 -8.34083 -6.12421 1.27761 1.43210 1.45334 1.48064 1.58238 1.61557 2.09485 2.25757 2.29801 2.68119 3.00175 3.04823 3.32451 3.55716 3.68024 3.76357 3.80819 3.84148 4.02919 4.03934 4.09280 4.14585 4.21966 4.31456 4.34061 4.41435 4.46928 4.52261 4.52721 4.61223 4.78372 4.80211 4.81148 4.87343 4.95775 5.02423 5.03612 5.12163 5.18003 5.27376 5.29086 5.33388 5.42200 5.43047 5.53006 6.20328 6.51423 6.53730 7.07242 7.23269 7.26182 8.75115 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.001710 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.902508 B =16370.690241 C =17449.149927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.064 0.936 4 C -0.121 4.121 5 C 0.120 3.880 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.129 4.129 10 S -0.156 6.156 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.257 1.257 19 N -0.711 5.711 20 C 0.538 3.462 21 O -0.585 6.585 22 C -0.184 4.184 23 H 0.149 0.851 24 C -0.141 4.141 25 C -0.093 4.093 26 H 0.094 0.906 27 C -0.130 4.130 28 C -0.180 4.180 29 C -0.171 4.171 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.419 0.581 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.271 0.729 41 H 0.415 0.585 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.359 -1.564 -17.805 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.159 4.159 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.447 6.447 9 C -0.280 4.280 10 S 0.071 5.929 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.181 1.181 19 N -0.363 5.363 20 C 0.326 3.674 21 O -0.466 6.466 22 C -0.205 4.205 23 H 0.167 0.833 24 C -0.179 4.179 25 C -0.112 4.112 26 H 0.112 0.888 27 C -0.148 4.148 28 C -0.217 4.217 29 C -0.208 4.208 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.257 0.743 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.252 0.748 42 H 0.102 0.898 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.125 0.196 -19.074 30.755 hybrid contribution -0.326 -1.177 1.913 2.270 sum -24.451 -0.981 -17.161 29.889 Atomic orbital electron populations 1.22086 0.93491 1.03268 1.02389 1.20895 0.95045 0.96602 0.83566 0.91742 1.22033 0.91851 1.03751 0.98276 1.21356 0.95470 0.96344 0.87177 1.45692 1.06009 1.57223 1.27505 1.20124 0.83001 0.79283 0.85928 1.90703 1.56763 1.46731 1.50551 1.23370 1.00873 1.04502 0.99238 1.85626 0.99869 1.73347 1.34026 1.23215 0.96225 1.40008 1.09945 0.89769 1.26136 0.94692 0.96524 1.01825 1.70185 0.99933 1.44169 1.40554 0.84945 0.78164 0.78038 0.76775 1.19250 1.20440 1.18130 1.46007 1.66616 1.14815 1.08863 1.20113 0.76186 0.86246 0.84838 1.90678 1.52098 1.17981 1.85840 1.22373 1.03677 1.01805 0.92622 0.83294 1.23105 0.89363 1.03609 1.01806 1.21726 1.01397 0.98302 0.89731 0.88832 1.21792 0.94336 1.03616 0.95018 1.23064 1.03160 0.97105 0.98338 1.23024 0.96843 0.97965 1.02995 0.94165 0.90509 0.90055 0.87474 0.87649 0.92419 0.93790 0.74310 0.87162 0.86888 0.92024 0.74849 0.89758 0.85498 0.86053 0.89578 0.87396 0.87231 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.48 71.98 0.68 -1.11 16 2 C 0.14 2.05 2.57 44.99 0.12 2.17 16 3 H 0.06 1.32 7.58 -2.39 -0.02 1.30 16 4 C -0.12 -1.26 4.87 30.60 0.15 -1.11 16 5 C 0.12 2.43 5.56 86.38 0.48 2.91 16 6 N -0.71 -16.00 5.56 -463.07 -2.57 -18.58 16 7 C 0.53 18.96 7.85 87.66 0.69 19.65 16 8 O -0.57 -26.37 15.86 -3.04 -0.05 -26.42 16 9 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 10 S -0.16 -8.59 20.57 -56.49 -1.16 -9.76 16 11 C -0.55 -30.87 9.50 67.95 0.65 -30.23 16 12 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 13 C 0.01 0.73 5.49 84.86 0.47 1.20 16 14 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 15 Si 1.00 43.13 29.55 68.60 2.03 45.15 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 19 N -0.71 -10.35 4.53 -442.53 -2.00 -12.35 16 20 C 0.54 10.98 7.58 87.66 0.66 11.64 16 21 O -0.59 -17.05 15.92 -3.04 -0.05 -17.10 16 22 C -0.18 -2.80 5.84 -11.54 -0.07 -2.86 16 23 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 24 C -0.14 -2.22 9.95 30.58 0.30 -1.91 16 25 C -0.09 -1.52 5.38 -10.81 -0.06 -1.58 16 26 H 0.09 2.01 7.67 -2.38 -0.02 2.00 16 27 C -0.13 -1.58 5.87 -10.80 -0.06 -1.64 16 28 C -0.18 -2.11 10.25 30.62 0.31 -1.80 16 29 C -0.17 -1.83 10.18 30.62 0.31 -1.52 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.42 6.02 8.47 -92.71 -0.79 5.23 16 38 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 41 H 0.41 3.87 8.60 -92.71 -0.80 3.07 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -83.88 419.52 0.93 -82.95 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.62 Total: 22.39 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.07 Total: -10.68 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -4.29 Total: -86.54 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.10 Total: -43.52 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -83.88 0.93 -82.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.084 kcal (2) G-P(sol) polarization free energy of solvation -83.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds