Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46833 * 2 1 4 4 C 1.52989 * 109.47149 * 120.00536 * 2 1 3 5 5 C 1.53006 * 109.47130 * 185.00096 * 4 2 1 6 6 N 1.46500 * 109.47373 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00241 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99850 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00466 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.47238 * 179.97438 * 9 7 6 11 11 C 1.76205 * 99.99610 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00040 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99527 * 179.97438 * 11 10 9 14 14 N 1.31638 * 119.99705 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00469 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47396 * 89.99459 * 15 13 11 17 17 H 1.48500 * 109.47341 * 210.00010 * 15 13 11 18 18 H 1.48511 * 109.46852 * 329.99621 * 15 13 11 19 19 N 1.46501 * 109.46715 * 240.00304 * 2 1 3 20 20 C 1.34785 * 120.00085 * 84.99961 * 19 2 1 21 21 O 1.21287 * 119.99601 * 359.97438 * 20 19 2 22 22 C 1.50690 * 119.99986 * 179.97438 * 20 19 2 23 23 H 1.08993 * 115.56396 * 325.58686 * 22 20 19 24 24 C 1.53130 * 117.51226 * 111.32041 * 22 20 19 25 25 C 1.52467 * 117.51314 * 179.84790 * 22 20 19 26 26 C 1.53247 * 128.58446 * 134.95463 * 25 22 20 27 27 C 1.53888 * 86.88761 * 194.88860 * 26 25 22 28 28 C 1.53249 * 128.58416 * 10.15398 * 25 22 20 29 29 H 1.08998 * 109.46851 * 60.00024 * 1 2 3 30 30 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46604 * 299.99468 * 1 2 3 32 32 H 1.08993 * 109.47772 * 65.00131 * 4 2 1 33 33 H 1.09000 * 109.47099 * 304.99772 * 4 2 1 34 34 H 1.09004 * 109.47107 * 59.99710 * 5 4 2 35 35 H 1.09000 * 109.46866 * 299.99819 * 5 4 2 36 36 H 0.97003 * 119.99532 * 359.97438 * 6 5 4 37 37 H 1.09004 * 109.46923 * 59.99646 * 9 7 6 38 38 H 1.09004 * 109.46818 * 300.00196 * 9 7 6 39 39 H 0.96996 * 119.99710 * 180.02562 * 14 13 11 40 40 H 0.96997 * 120.00469 * 264.99588 * 19 2 1 41 41 H 1.09001 * 117.51250 * 214.89824 * 24 22 20 42 42 H 1.09002 * 117.50827 * 0.02562 * 24 22 20 43 43 H 1.09004 * 113.65023 * 309.38472 * 26 25 22 44 44 H 1.08999 * 113.65082 * 80.39042 * 26 25 22 45 45 H 1.08997 * 113.58970 * 270.39945 * 27 26 25 46 46 H 1.08997 * 113.66801 * 139.57795 * 27 26 25 47 47 H 1.08998 * 113.65258 * 279.61343 * 28 25 22 48 48 H 1.09003 * 113.64556 * 50.61192 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 7 4.0533 -1.3035 2.5100 7 6 5.3741 -1.3388 2.7757 8 8 6.1584 -0.7995 2.0241 9 6 5.8764 -2.0482 4.0067 10 16 7.6803 -1.9205 4.0828 11 6 7.9871 -2.8081 5.5738 12 1 7.1634 -3.2305 6.1300 13 6 9.2876 -2.9652 6.0326 14 7 9.5169 -3.6287 7.1462 15 14 10.7124 -2.2353 5.0701 16 1 10.9754 -0.8536 5.5465 17 1 11.9251 -3.0681 5.2729 18 1 10.3694 -2.2040 3.6255 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0181 -2.3573 21 8 1.8581 1.1586 -2.4117 22 6 2.6498 -0.7283 -3.5876 23 1 3.3953 -1.5036 -3.4114 24 6 1.6569 -0.9489 -4.7324 25 6 2.7700 0.0858 -4.8711 26 6 3.9249 0.1179 -5.8779 27 6 3.2871 1.4000 -6.4414 28 6 2.6485 1.6022 -5.0559 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.7518 -1.7715 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8533 0.4370 1.3573 35 1 3.9995 -1.0728 0.4258 36 1 3.4259 -1.7345 3.1112 37 1 5.5883 -3.0986 3.9637 38 1 5.4414 -1.5882 4.8941 39 1 10.4256 -3.7382 7.4671 40 1 2.2491 -1.6317 -1.1528 41 1 1.7501 -1.8689 -5.3094 42 1 0.6405 -0.5798 -4.5954 43 1 4.9004 0.2801 -5.4193 44 1 3.9182 -0.7177 -6.5777 45 1 2.5613 1.2145 -7.2332 46 1 4.0120 2.1703 -6.7042 47 1 1.6185 1.9566 -5.0967 48 1 3.2686 2.1775 -4.3685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -41.147075 kcal Electronic energy + Delta-G solvation = -26225.000822 eV Core-core repulsion = 22407.174069 eV Total energy + Delta-G solvation = -3817.826753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75094 -39.44171 -38.89365 -36.76295 -34.51520 -34.04365 -32.45274 -31.84678 -30.19444 -28.24583 -25.99453 -25.63542 -25.00541 -23.47524 -23.32091 -21.42073 -20.61417 -20.39958 -18.70989 -17.90472 -17.52757 -16.73978 -16.30529 -16.06503 -15.72238 -15.54973 -15.30847 -15.15093 -14.96342 -14.54550 -14.16529 -13.87731 -13.79819 -13.38540 -13.18400 -12.91130 -12.80917 -12.63493 -12.47903 -12.34395 -12.29610 -11.89690 -11.80031 -11.71274 -11.62290 -11.32195 -11.26997 -11.01915 -10.69431 -10.61945 -10.44880 -10.16678 -9.90549 -9.87118 -9.57872 -9.40213 -9.04198 -8.98703 -8.51725 -6.93550 -6.30348 -4.02259 2.22382 2.73879 2.76771 2.94964 3.27724 3.32959 3.37140 3.49566 3.62307 3.98880 4.24568 4.31832 4.33923 4.39385 4.44124 4.49001 4.54603 4.67869 4.72868 4.76770 5.03187 5.04223 5.06313 5.08727 5.18292 5.23424 5.26464 5.32704 5.34515 5.38759 5.49380 5.52254 5.57050 5.58058 5.69313 5.75838 5.79081 5.80687 5.86020 5.97216 5.98639 6.09824 6.18410 6.47643 7.19259 7.56749 7.92713 7.96591 8.39960 8.46158 9.15842 10.78814 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.001916 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.123772 B =14612.519453 C =16041.068455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.724 5.724 20 C 0.547 3.453 21 O -0.534 6.534 22 C -0.182 4.182 23 H 0.124 0.876 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.100 4.100 27 C -0.143 4.143 28 C -0.082 4.082 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.401 0.599 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.550 4.755 -23.071 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.376 5.376 20 C 0.333 3.667 21 O -0.410 6.410 22 C -0.203 4.203 23 H 0.142 0.858 24 C -0.159 4.159 25 C -0.126 4.126 26 C -0.137 4.137 27 C -0.180 4.180 28 C -0.119 4.119 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.235 0.765 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.310 6.457 -24.222 32.263 hybrid contribution -0.363 -1.325 1.280 1.878 sum -20.673 5.132 -22.943 31.307 Atomic orbital electron populations 1.22158 0.94827 1.02234 1.02758 1.20873 0.94131 0.97731 0.83156 0.88969 1.22127 0.95329 1.02007 0.98331 1.21268 0.92733 0.97977 0.88299 1.45963 1.07722 1.58504 1.27095 1.20298 0.81652 0.79755 0.86780 1.90709 1.54996 1.44475 1.49129 1.23281 1.03066 1.03245 0.97882 1.84811 0.98101 1.73993 1.34687 1.22314 0.97286 1.39601 1.07718 0.89386 1.24719 0.98314 0.93882 0.94425 1.69941 1.21727 1.39475 1.20513 0.86730 0.82138 0.79898 0.83062 1.19196 1.19932 1.15930 1.46074 1.67838 1.14108 1.09577 1.19631 0.76852 0.86684 0.83522 1.90695 1.49762 1.15707 1.84839 1.22179 1.04732 1.04445 0.88979 0.85844 1.22807 0.94782 0.99948 0.98344 1.22329 0.99409 0.95313 0.95562 1.22521 0.96552 0.98350 0.96276 1.22817 1.00214 0.97756 0.97242 1.22325 1.01525 0.92313 0.95737 0.91974 0.92361 0.91419 0.90482 0.89385 0.91532 0.91593 0.76671 0.88472 0.88490 0.91936 0.76455 0.87600 0.88145 0.89405 0.91208 0.90202 0.91153 0.91360 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.69 16 2 C 0.15 1.08 2.57 -67.93 -0.17 0.90 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 4 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 5 C 0.12 1.25 5.56 -4.04 -0.02 1.23 16 6 N -0.74 -8.74 5.56 -60.29 -0.33 -9.08 16 7 C 0.53 9.21 7.85 -10.99 -0.09 9.12 16 8 O -0.52 -11.19 15.86 5.56 0.09 -11.10 16 9 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 10 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 11 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 12 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 13 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 14 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 15 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 19 N -0.72 -5.39 4.53 -53.81 -0.24 -5.64 16 20 C 0.55 5.31 7.58 -10.99 -0.08 5.22 16 21 O -0.53 -6.92 14.80 5.55 0.08 -6.84 16 22 C -0.18 -1.42 6.19 -91.98 -0.57 -1.99 16 23 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.12 -0.79 10.24 -26.87 -0.28 -1.06 16 25 C -0.13 -1.00 2.88 -154.73 -0.45 -1.45 16 26 C -0.10 -0.69 8.10 -26.14 -0.21 -0.90 16 27 C -0.14 -0.97 8.08 -25.81 -0.21 -1.18 16 28 C -0.08 -0.72 6.47 -26.14 -0.17 -0.89 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 36 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 37 H 0.10 1.70 8.14 -51.91 -0.42 1.27 16 38 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.40 2.20 8.60 -40.82 -0.35 1.85 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 LS Contribution 410.59 15.07 6.19 6.19 Total: -1.00 -35.88 410.59 -9.99 -45.88 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.25 Total: 1.62 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.59 Total: -6.81 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.20 Total: -40.39 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.17 Total: -17.94 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.88 -9.99 -45.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.731 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds