Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46833 * 2 1 4 4 C 1.52989 * 109.47149 * 120.00536 * 2 1 3 5 5 C 1.53006 * 109.47130 * 185.00096 * 4 2 1 6 6 N 1.46500 * 109.47373 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00241 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99850 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00466 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.47238 * 179.97438 * 9 7 6 11 11 C 1.76205 * 99.99610 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00040 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99527 * 179.97438 * 11 10 9 14 14 N 1.31638 * 119.99705 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00469 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47396 * 89.99459 * 15 13 11 17 17 H 1.48500 * 109.47341 * 210.00010 * 15 13 11 18 18 H 1.48511 * 109.46852 * 329.99621 * 15 13 11 19 19 N 1.46501 * 109.46715 * 240.00304 * 2 1 3 20 20 C 1.34785 * 120.00085 * 84.99961 * 19 2 1 21 21 O 1.21287 * 119.99601 * 359.97438 * 20 19 2 22 22 C 1.50690 * 119.99986 * 179.97438 * 20 19 2 23 23 H 1.08993 * 115.56396 * 325.58686 * 22 20 19 24 24 C 1.53130 * 117.51226 * 111.32041 * 22 20 19 25 25 C 1.52467 * 117.51314 * 179.84790 * 22 20 19 26 26 C 1.53247 * 128.58446 * 134.95463 * 25 22 20 27 27 C 1.53888 * 86.88761 * 194.88860 * 26 25 22 28 28 C 1.53249 * 128.58416 * 10.15398 * 25 22 20 29 29 H 1.08998 * 109.46851 * 60.00024 * 1 2 3 30 30 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46604 * 299.99468 * 1 2 3 32 32 H 1.08993 * 109.47772 * 65.00131 * 4 2 1 33 33 H 1.09000 * 109.47099 * 304.99772 * 4 2 1 34 34 H 1.09004 * 109.47107 * 59.99710 * 5 4 2 35 35 H 1.09000 * 109.46866 * 299.99819 * 5 4 2 36 36 H 0.97003 * 119.99532 * 359.97438 * 6 5 4 37 37 H 1.09004 * 109.46923 * 59.99646 * 9 7 6 38 38 H 1.09004 * 109.46818 * 300.00196 * 9 7 6 39 39 H 0.96996 * 119.99710 * 180.02562 * 14 13 11 40 40 H 0.96997 * 120.00469 * 264.99588 * 19 2 1 41 41 H 1.09001 * 117.51250 * 214.89824 * 24 22 20 42 42 H 1.09002 * 117.50827 * 0.02562 * 24 22 20 43 43 H 1.09004 * 113.65023 * 309.38472 * 26 25 22 44 44 H 1.08999 * 113.65082 * 80.39042 * 26 25 22 45 45 H 1.08997 * 113.58970 * 270.39945 * 27 26 25 46 46 H 1.08997 * 113.66801 * 139.57795 * 27 26 25 47 47 H 1.08998 * 113.65258 * 279.61343 * 28 25 22 48 48 H 1.09003 * 113.64556 * 50.61192 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 7 4.0533 -1.3035 2.5100 7 6 5.3741 -1.3388 2.7757 8 8 6.1584 -0.7995 2.0241 9 6 5.8764 -2.0482 4.0067 10 16 7.6803 -1.9205 4.0828 11 6 7.9871 -2.8081 5.5738 12 1 7.1634 -3.2305 6.1300 13 6 9.2876 -2.9652 6.0326 14 7 9.5169 -3.6287 7.1462 15 14 10.7124 -2.2353 5.0701 16 1 10.9754 -0.8536 5.5465 17 1 11.9251 -3.0681 5.2729 18 1 10.3694 -2.2040 3.6255 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0181 -2.3573 21 8 1.8581 1.1586 -2.4117 22 6 2.6498 -0.7283 -3.5876 23 1 3.3953 -1.5036 -3.4114 24 6 1.6569 -0.9489 -4.7324 25 6 2.7700 0.0858 -4.8711 26 6 3.9249 0.1179 -5.8779 27 6 3.2871 1.4000 -6.4414 28 6 2.6485 1.6022 -5.0559 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.7518 -1.7715 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8533 0.4370 1.3573 35 1 3.9995 -1.0728 0.4258 36 1 3.4259 -1.7345 3.1112 37 1 5.5883 -3.0986 3.9637 38 1 5.4414 -1.5882 4.8941 39 1 10.4256 -3.7382 7.4671 40 1 2.2491 -1.6317 -1.1528 41 1 1.7501 -1.8689 -5.3094 42 1 0.6405 -0.5798 -4.5954 43 1 4.9004 0.2801 -5.4193 44 1 3.9182 -0.7177 -6.5777 45 1 2.5613 1.2145 -7.2332 46 1 4.0120 2.1703 -6.7042 47 1 1.6185 1.9566 -5.0967 48 1 3.2686 2.1775 -4.3685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075678406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -65.617019 kcal Electronic energy + Delta-G solvation = -26226.061918 eV Core-core repulsion = 22407.174069 eV Total energy + Delta-G solvation = -3818.887850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42627 -40.67321 -39.62962 -37.58235 -35.59341 -34.67315 -34.65427 -32.67637 -31.34221 -29.24875 -27.84504 -26.60829 -25.66027 -24.21821 -23.94041 -22.19116 -21.57716 -21.29269 -19.89801 -19.30231 -18.25029 -17.86145 -17.38617 -17.21074 -17.03168 -16.71585 -16.16888 -16.10732 -15.92845 -15.63443 -15.30467 -15.07555 -14.94932 -14.75262 -14.42620 -13.84504 -13.64419 -13.58243 -13.34963 -13.25198 -13.04733 -13.02354 -12.95579 -12.72527 -12.48204 -12.43485 -12.37592 -12.32734 -11.94734 -11.85883 -11.29652 -11.17571 -11.04200 -11.03085 -10.81326 -10.58009 -10.53413 -10.20792 -10.04359 -9.00086 -8.51862 -6.22605 0.98929 1.30988 1.46468 1.51518 1.55394 1.55925 2.15023 2.21012 2.25744 2.71701 2.77223 2.86386 3.41331 3.66881 3.70815 3.75579 3.79911 3.87576 3.94799 3.98874 4.05240 4.15781 4.24239 4.41795 4.46398 4.47527 4.49633 4.60282 4.63446 4.77440 4.81278 4.83266 4.87153 4.87669 5.00015 5.03806 5.06747 5.12527 5.13599 5.29564 5.38055 5.39403 5.49622 5.55793 5.70592 6.11308 6.47267 6.57146 6.93536 7.19908 7.28691 8.60333 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.001916 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.123772 B =14612.519453 C =16041.068455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.065 0.935 4 C -0.123 4.123 5 C 0.121 3.879 6 N -0.709 5.709 7 C 0.532 3.468 8 O -0.566 6.566 9 C -0.110 4.110 10 S -0.181 6.181 11 C -0.527 4.527 12 H 0.064 0.936 13 C 0.045 3.955 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.264 1.264 17 H -0.259 1.259 18 H -0.237 1.237 19 N -0.714 5.714 20 C 0.539 3.461 21 O -0.575 6.575 22 C -0.190 4.190 23 H 0.139 0.861 24 C -0.102 4.102 25 C -0.143 4.143 26 C -0.095 4.095 27 C -0.135 4.135 28 C -0.091 4.091 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.420 0.580 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.413 0.587 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.971 3.552 -24.145 33.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.161 4.161 5 C -0.003 4.003 6 N -0.363 5.363 7 C 0.318 3.682 8 O -0.445 6.445 9 C -0.261 4.261 10 S 0.046 5.954 11 C -0.675 4.675 12 H 0.082 0.918 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.189 1.189 17 H -0.183 1.183 18 H -0.161 1.161 19 N -0.366 5.366 20 C 0.326 3.674 21 O -0.455 6.455 22 C -0.211 4.211 23 H 0.157 0.843 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.132 4.132 27 C -0.172 4.172 28 C -0.128 4.128 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.257 0.743 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.250 0.750 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.788 5.207 -25.267 33.768 hybrid contribution -0.108 -0.927 1.639 1.886 sum -21.896 4.280 -23.628 32.497 Atomic orbital electron populations 1.22082 0.93644 1.03147 1.02325 1.20858 0.94938 0.96585 0.83549 0.91683 1.22038 0.91954 1.03716 0.98344 1.21367 0.95419 0.96415 0.87060 1.45689 1.06017 1.57113 1.27519 1.20012 0.83113 0.79321 0.85772 1.90702 1.56622 1.46718 1.50456 1.23273 0.98016 1.05106 0.99727 1.84773 1.04472 1.73474 1.32697 1.22453 0.96803 1.39464 1.08787 0.91789 1.25555 1.00810 0.94322 0.95324 1.70015 1.22720 1.40740 1.21903 0.85877 0.79595 0.79403 0.81557 1.18855 1.18318 1.16116 1.46037 1.66938 1.14604 1.09046 1.20049 0.76377 0.86342 0.84591 1.90679 1.51722 1.17522 1.85559 1.22250 1.05818 1.04685 0.88299 0.84303 1.22885 0.93874 1.00087 0.97068 1.22481 1.00839 0.94771 0.96264 1.22488 0.95759 0.98833 0.96091 1.22810 1.00264 0.97910 0.96214 1.22264 1.00486 0.93183 0.96892 0.94126 0.90672 0.90195 0.87777 0.87568 0.93567 0.92304 0.74266 0.86500 0.86766 0.91383 0.75018 0.85056 0.88674 0.90050 0.89494 0.88963 0.90858 0.92580 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.48 71.99 0.68 -1.02 16 2 C 0.15 1.95 2.57 44.99 0.12 2.07 16 3 H 0.06 1.26 7.58 -2.39 -0.02 1.24 16 4 C -0.12 -1.17 4.87 30.59 0.15 -1.02 16 5 C 0.12 2.26 5.56 86.38 0.48 2.74 16 6 N -0.71 -14.80 5.56 -463.05 -2.57 -17.37 16 7 C 0.53 17.60 7.85 87.66 0.69 18.28 16 8 O -0.57 -24.14 15.86 -3.04 -0.05 -24.19 16 9 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16 10 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 11 C -0.53 -30.41 10.04 67.95 0.68 -29.73 16 12 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 13 C 0.05 2.65 5.50 84.86 0.47 3.11 16 14 N -0.92 -55.40 13.97 21.65 0.30 -55.10 16 15 Si 0.91 44.94 27.74 68.60 1.90 46.84 16 16 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 19 N -0.71 -9.77 4.53 -442.53 -2.00 -11.78 16 20 C 0.54 10.45 7.58 87.65 0.66 11.11 16 21 O -0.58 -15.71 14.80 -3.05 -0.05 -15.75 16 22 C -0.19 -2.78 6.19 -11.68 -0.07 -2.85 16 23 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 24 C -0.10 -1.15 10.24 30.50 0.31 -0.84 16 25 C -0.14 -2.21 2.88 -52.33 -0.15 -2.36 16 26 C -0.09 -1.20 8.10 30.98 0.25 -0.95 16 27 C -0.13 -1.76 8.08 31.19 0.25 -1.51 16 28 C -0.09 -1.69 6.47 30.98 0.20 -1.49 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 36 H 0.42 5.56 8.47 -92.71 -0.79 4.77 16 37 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.41 3.59 8.60 -92.71 -0.80 2.79 16 41 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.06 1.47 8.05 -2.39 -0.02 1.45 16 Total: -1.00 -80.59 410.59 0.99 -79.60 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.66 Total: 15.86 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.16 Total: -8.02 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -4.27 Total: -84.24 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.09 Total: -39.94 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -80.59 0.99 -79.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.987 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds