Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47040 * 2 1 4 4 C 1.53006 * 109.46948 * 119.99975 * 2 1 3 5 5 C 1.53003 * 109.46644 * 185.00220 * 4 2 1 6 6 N 1.46508 * 109.46765 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99877 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99984 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99836 * 180.02562 * 7 6 5 10 10 S 1.81006 * 109.47214 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00045 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99909 * 359.97438 * 11 10 9 13 13 C 1.38791 * 119.99936 * 180.02562 * 11 10 9 14 14 N 1.31637 * 120.00268 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00177 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46752 * 60.00004 * 15 13 11 17 17 H 1.48498 * 109.47473 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47184 * 299.99924 * 15 13 11 19 19 N 1.46501 * 109.47218 * 239.99822 * 2 1 3 20 20 C 1.34778 * 120.00269 * 84.99959 * 19 2 1 21 21 O 1.21285 * 119.99457 * 0.02562 * 20 19 2 22 22 C 1.50698 * 120.00389 * 179.97438 * 20 19 2 23 23 H 1.08998 * 110.66974 * 303.23995 * 22 20 19 24 24 C 1.54888 * 110.91069 * 66.57755 * 22 20 19 25 25 C 1.54266 * 104.19408 * 156.33247 * 24 22 20 26 26 H 1.09003 * 117.06675 * 115.99202 * 25 24 22 27 27 C 1.55472 * 118.30148 * 272.80756 * 25 24 22 28 28 C 1.53000 * 59.84143 * 93.29278 * 27 25 24 29 29 H 1.09002 * 119.30055 * 111.71184 * 28 27 25 30 30 C 1.54264 * 118.19605 * 265.85193 * 28 27 25 31 31 H 1.09000 * 109.46937 * 60.00581 * 1 2 3 32 32 H 1.09005 * 109.46841 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47113 * 300.00218 * 1 2 3 34 34 H 1.09002 * 109.46899 * 304.99712 * 4 2 1 35 35 H 1.08994 * 109.47360 * 64.99832 * 4 2 1 36 36 H 1.09002 * 109.47058 * 299.99394 * 5 4 2 37 37 H 1.08992 * 109.47166 * 60.00094 * 5 4 2 38 38 H 0.96997 * 119.99835 * 359.97438 * 6 5 4 39 39 H 1.09001 * 109.47357 * 299.99485 * 9 7 6 40 40 H 1.09000 * 109.47740 * 59.99602 * 9 7 6 41 41 H 0.96996 * 120.00207 * 180.02562 * 14 13 11 42 42 H 0.96999 * 120.00003 * 264.99946 * 19 2 1 43 43 H 1.08999 * 110.48880 * 275.00712 * 24 22 20 44 44 H 1.09004 * 110.48864 * 37.52420 * 24 22 20 45 45 H 1.08999 * 117.28680 * 345.81037 * 27 25 24 46 46 H 1.09001 * 117.95232 * 200.47464 * 27 25 24 47 47 H 1.09001 * 110.48918 * 207.67837 * 30 28 27 48 48 H 1.08996 * 110.48854 * 330.32647 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5103 7 6 5.3739 -1.3385 2.7760 8 8 6.1583 -0.7993 2.0244 9 6 5.8762 -2.0489 4.0065 10 16 7.6801 -1.9210 4.0829 11 6 7.9870 -2.8096 5.5731 12 1 7.1633 -3.2319 6.1294 13 6 9.2873 -2.9660 6.0326 14 7 10.2914 -2.4509 5.3548 15 14 9.6127 -3.9075 7.6128 16 1 9.1121 -5.2985 7.4722 17 1 11.0728 -3.9323 7.8827 18 1 8.9119 -3.2407 8.7396 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0184 -2.3572 21 8 1.8591 1.1585 -2.4115 22 6 2.6500 -0.7286 -3.5875 23 1 3.6254 -1.1778 -3.4007 24 6 1.6351 -1.7982 -4.0620 25 6 1.9500 -1.9796 -5.5612 26 1 2.3133 -2.9576 -5.8769 27 6 1.2537 -1.0342 -6.5804 28 6 2.6359 -0.6830 -6.0264 29 1 3.4989 -0.7056 -6.6919 30 6 2.7138 0.2410 -4.7936 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 1.7516 -1.7715 1.2057 36 1 3.9995 -1.0728 0.4260 37 1 3.8531 0.4370 1.3574 38 1 3.4257 -1.7342 3.1116 39 1 5.4412 -1.5897 4.8942 40 1 5.5883 -3.0993 3.9628 41 1 11.2001 -2.5606 5.6757 42 1 2.2491 -1.6318 -1.1526 43 1 1.7876 -2.7339 -3.5243 44 1 0.6139 -1.4424 -3.9250 45 1 0.4055 -0.4510 -6.2220 46 1 1.1960 -1.3571 -7.6199 47 1 3.6535 0.7934 -4.7896 48 1 1.8669 0.9269 -4.7768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -68.432198 kcal Electronic energy + Delta-G solvation = -26256.617423 eV Core-core repulsion = 22437.607498 eV Total energy + Delta-G solvation = -3819.009925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76107 -39.33324 -38.84891 -36.77663 -34.45848 -32.74005 -32.43982 -31.32650 -30.04055 -28.63641 -28.15247 -25.50780 -24.74502 -23.35727 -21.74411 -21.18981 -20.39301 -20.24369 -19.96905 -17.87857 -17.40877 -16.86809 -16.54983 -16.20274 -16.00826 -15.38131 -15.24714 -14.81522 -14.49719 -14.24620 -14.00836 -13.80498 -13.68369 -13.52938 -13.44372 -13.18985 -12.80887 -12.58686 -12.40937 -12.20421 -12.02283 -11.71115 -11.65965 -11.60288 -11.51526 -11.45831 -11.26850 -11.05899 -11.04897 -10.77865 -10.43576 -10.21083 -9.87863 -9.83942 -9.48807 -9.36796 -9.07648 -8.91793 -8.25461 -6.51549 -6.22606 -3.93597 2.35104 2.82084 3.00321 3.07580 3.16804 3.22411 3.26464 3.29618 3.66800 3.99279 4.18958 4.19339 4.35645 4.42866 4.51438 4.65792 4.69762 4.74894 4.80099 4.96107 5.03936 5.06232 5.07748 5.12363 5.16437 5.20729 5.28482 5.29214 5.35720 5.36983 5.48568 5.58103 5.61159 5.70355 5.73897 5.77966 5.79925 5.83122 5.87391 5.91255 5.96675 6.11443 6.19743 6.56951 7.18303 7.57891 7.67036 7.94546 8.33731 8.58790 9.22425 10.84735 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.001756 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.514250 B =15943.465706 C =16845.870938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.725 5.725 20 C 0.524 3.476 21 O -0.538 6.538 22 C -0.116 4.116 23 H 0.106 0.894 24 C -0.082 4.082 25 C -0.170 4.170 26 H 0.114 0.886 27 C -0.152 4.152 28 C -0.163 4.163 29 H 0.111 0.889 30 C -0.078 4.078 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.401 0.599 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.075 0.925 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.671 0.255 -18.266 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.377 5.377 20 C 0.311 3.689 21 O -0.414 6.414 22 C -0.138 4.138 23 H 0.124 0.876 24 C -0.120 4.120 25 C -0.188 4.188 26 H 0.132 0.868 27 C -0.189 4.189 28 C -0.181 4.181 29 H 0.129 0.871 30 C -0.115 4.115 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.235 0.765 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.094 0.906 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.344 2.061 -19.558 29.766 hybrid contribution -0.787 -1.999 2.231 3.097 sum -23.131 0.062 -17.327 28.901 Atomic orbital electron populations 1.22157 0.94846 1.02205 1.02764 1.20891 0.94117 0.97795 0.83254 0.88937 1.22126 0.95444 1.01913 0.98273 1.21255 0.92608 0.98016 0.88432 1.46004 1.07833 1.58655 1.27033 1.20325 0.81483 0.79715 0.86824 1.90711 1.54954 1.44332 1.49077 1.23532 1.06901 1.02520 0.97463 1.85415 0.92134 1.72743 1.33072 1.22825 0.95464 1.40293 1.09915 0.90974 1.24993 0.95040 0.95635 0.97900 1.70008 0.99414 1.42519 1.38326 0.86223 0.77383 0.79916 0.81961 1.19952 1.20797 1.19933 1.46144 1.67747 1.14144 1.09691 1.20486 0.77006 0.87145 0.84299 1.90704 1.49764 1.15958 1.84961 1.22535 1.00906 0.97133 0.93191 0.87589 1.21869 0.98505 0.97881 0.93755 1.23577 1.06403 0.95301 0.93545 0.86810 1.23444 0.95509 1.01840 0.98110 1.23292 0.96785 0.97714 1.00356 0.87064 1.21800 1.03655 0.96200 0.89878 0.91979 0.92376 0.91428 0.89445 0.90548 0.91648 0.91566 0.76849 0.89225 0.89243 0.92110 0.76463 0.90440 0.90985 0.88907 0.88248 0.90601 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.14 1.09 2.57 -67.93 -0.17 0.91 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.12 1.30 5.56 -4.04 -0.02 1.28 16 6 N -0.74 -9.22 5.56 -60.29 -0.33 -9.55 16 7 C 0.53 9.71 7.85 -10.99 -0.09 9.62 16 8 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 15 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 19 N -0.73 -5.36 4.53 -53.80 -0.24 -5.60 16 20 C 0.52 5.03 7.11 -10.99 -0.08 4.95 16 21 O -0.54 -7.18 15.39 5.55 0.09 -7.09 16 22 C -0.12 -0.88 3.28 -89.78 -0.29 -1.17 16 23 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 24 C -0.08 -0.49 6.08 -25.07 -0.15 -0.65 16 25 C -0.17 -1.04 7.04 -88.18 -0.62 -1.66 16 26 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 27 C -0.15 -0.92 10.21 -25.42 -0.26 -1.18 16 28 C -0.16 -1.11 6.85 -89.50 -0.61 -1.73 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 C -0.08 -0.64 5.69 -25.07 -0.14 -0.78 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.40 2.16 8.60 -40.82 -0.35 1.81 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 0.79 7.44 -51.93 -0.39 0.40 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -36.33 409.89 -10.72 -47.05 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.18 Total: 1.52 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.80 Total: -7.90 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.16 Total: -40.53 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.17 Total: -18.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.33 -10.72 -47.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.385 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds