Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47040 * 2 1 4 4 C 1.53006 * 109.46948 * 119.99975 * 2 1 3 5 5 C 1.53003 * 109.46644 * 185.00220 * 4 2 1 6 6 N 1.46508 * 109.46765 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99877 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99984 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99836 * 180.02562 * 7 6 5 10 10 S 1.81006 * 109.47214 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00045 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99909 * 359.97438 * 11 10 9 13 13 C 1.38791 * 119.99936 * 180.02562 * 11 10 9 14 14 N 1.31637 * 120.00268 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00177 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46752 * 60.00004 * 15 13 11 17 17 H 1.48498 * 109.47473 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47184 * 299.99924 * 15 13 11 19 19 N 1.46501 * 109.47218 * 239.99822 * 2 1 3 20 20 C 1.34778 * 120.00269 * 84.99959 * 19 2 1 21 21 O 1.21285 * 119.99457 * 0.02562 * 20 19 2 22 22 C 1.50698 * 120.00389 * 179.97438 * 20 19 2 23 23 H 1.08998 * 110.66974 * 303.23995 * 22 20 19 24 24 C 1.54888 * 110.91069 * 66.57755 * 22 20 19 25 25 C 1.54266 * 104.19408 * 156.33247 * 24 22 20 26 26 H 1.09003 * 117.06675 * 115.99202 * 25 24 22 27 27 C 1.55472 * 118.30148 * 272.80756 * 25 24 22 28 28 C 1.53000 * 59.84143 * 93.29278 * 27 25 24 29 29 H 1.09002 * 119.30055 * 111.71184 * 28 27 25 30 30 C 1.54264 * 118.19605 * 265.85193 * 28 27 25 31 31 H 1.09000 * 109.46937 * 60.00581 * 1 2 3 32 32 H 1.09005 * 109.46841 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47113 * 300.00218 * 1 2 3 34 34 H 1.09002 * 109.46899 * 304.99712 * 4 2 1 35 35 H 1.08994 * 109.47360 * 64.99832 * 4 2 1 36 36 H 1.09002 * 109.47058 * 299.99394 * 5 4 2 37 37 H 1.08992 * 109.47166 * 60.00094 * 5 4 2 38 38 H 0.96997 * 119.99835 * 359.97438 * 6 5 4 39 39 H 1.09001 * 109.47357 * 299.99485 * 9 7 6 40 40 H 1.09000 * 109.47740 * 59.99602 * 9 7 6 41 41 H 0.96996 * 120.00207 * 180.02562 * 14 13 11 42 42 H 0.96999 * 120.00003 * 264.99946 * 19 2 1 43 43 H 1.08999 * 110.48880 * 275.00712 * 24 22 20 44 44 H 1.09004 * 110.48864 * 37.52420 * 24 22 20 45 45 H 1.08999 * 117.28680 * 345.81037 * 27 25 24 46 46 H 1.09001 * 117.95232 * 200.47464 * 27 25 24 47 47 H 1.09001 * 110.48918 * 207.67837 * 30 28 27 48 48 H 1.08996 * 110.48854 * 330.32647 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5103 7 6 5.3739 -1.3385 2.7760 8 8 6.1583 -0.7993 2.0244 9 6 5.8762 -2.0489 4.0065 10 16 7.6801 -1.9210 4.0829 11 6 7.9870 -2.8096 5.5731 12 1 7.1633 -3.2319 6.1294 13 6 9.2873 -2.9660 6.0326 14 7 10.2914 -2.4509 5.3548 15 14 9.6127 -3.9075 7.6128 16 1 9.1121 -5.2985 7.4722 17 1 11.0728 -3.9323 7.8827 18 1 8.9119 -3.2407 8.7396 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0184 -2.3572 21 8 1.8591 1.1585 -2.4115 22 6 2.6500 -0.7286 -3.5875 23 1 3.6254 -1.1778 -3.4007 24 6 1.6351 -1.7982 -4.0620 25 6 1.9500 -1.9796 -5.5612 26 1 2.3133 -2.9576 -5.8769 27 6 1.2537 -1.0342 -6.5804 28 6 2.6359 -0.6830 -6.0264 29 1 3.4989 -0.7056 -6.6919 30 6 2.7138 0.2410 -4.7936 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 1.7516 -1.7715 1.2057 36 1 3.9995 -1.0728 0.4260 37 1 3.8531 0.4370 1.3574 38 1 3.4257 -1.7342 3.1116 39 1 5.4412 -1.5897 4.8942 40 1 5.5883 -3.0993 3.9628 41 1 11.2001 -2.5606 5.6757 42 1 2.2491 -1.6318 -1.1526 43 1 1.7876 -2.7339 -3.5243 44 1 0.6139 -1.4424 -3.9250 45 1 0.4055 -0.4510 -6.2220 46 1 1.1960 -1.3571 -7.6199 47 1 3.6535 0.7934 -4.7896 48 1 1.8669 0.9269 -4.7768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075679145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = -93.330232 kcal Electronic energy + Delta-G solvation = -26257.697083 eV Core-core repulsion = 22437.607498 eV Total energy + Delta-G solvation = -3820.089585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44931 -40.61340 -39.57003 -37.62570 -35.58811 -34.57693 -33.45141 -32.15590 -31.15228 -29.20599 -29.19575 -27.64506 -25.40115 -24.18948 -22.37104 -21.94686 -21.52606 -20.95485 -20.54543 -19.82363 -18.16689 -17.80105 -17.40025 -17.22400 -17.12235 -16.87041 -16.59291 -16.07797 -15.73731 -15.32012 -15.10869 -14.78352 -14.53297 -14.44739 -14.25061 -14.11377 -14.00008 -13.55467 -13.49015 -13.16406 -13.01561 -12.86059 -12.66597 -12.59665 -12.44511 -12.38944 -12.27110 -12.13679 -12.02996 -11.91152 -11.73358 -11.12213 -10.98789 -10.96244 -10.83331 -10.51547 -10.26938 -10.19433 -10.04754 -8.66491 -8.33819 -6.12307 1.27679 1.44638 1.47861 1.57331 1.60299 1.61908 2.18358 2.26137 2.30116 2.64502 3.00259 3.32578 3.43092 3.66290 3.73891 3.79198 3.83225 4.04274 4.05874 4.12157 4.19414 4.24277 4.31684 4.42132 4.43373 4.47713 4.51859 4.52352 4.61847 4.62994 4.72816 4.81601 4.89019 4.89953 4.99821 5.05052 5.11223 5.13455 5.18469 5.30577 5.30961 5.40318 5.42111 5.43401 5.55410 6.20229 6.52096 6.54870 7.07302 7.25240 7.26412 8.75091 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.001756 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.514250 B =15943.465706 C =16845.870938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.121 4.121 5 C 0.120 3.880 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.129 4.129 10 S -0.156 6.156 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.262 1.262 19 N -0.714 5.714 20 C 0.520 3.480 21 O -0.583 6.583 22 C -0.114 4.114 23 H 0.115 0.885 24 C -0.077 4.077 25 C -0.165 4.165 26 H 0.128 0.872 27 C -0.152 4.152 28 C -0.174 4.174 29 H 0.117 0.883 30 C -0.081 4.081 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.419 0.581 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.271 0.729 42 H 0.414 0.586 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.065 0.935 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.040 -2.343 -17.000 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.071 5.929 11 C -0.694 4.694 12 H 0.103 0.897 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.187 1.187 19 N -0.366 5.366 20 C 0.307 3.693 21 O -0.463 6.463 22 C -0.135 4.135 23 H 0.133 0.867 24 C -0.115 4.115 25 C -0.183 4.183 26 H 0.146 0.854 27 C -0.189 4.189 28 C -0.192 4.192 29 H 0.135 0.865 30 C -0.119 4.119 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.257 0.743 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.080 0.920 42 H 0.251 0.749 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.132 0.868 47 H 0.084 0.916 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.786 -0.582 -18.271 30.798 hybrid contribution -0.162 -1.124 1.776 2.108 sum -24.948 -1.706 -16.495 29.957 Atomic orbital electron populations 1.22080 0.93522 1.03244 1.02332 1.20884 0.95033 0.96614 0.83636 0.91740 1.22034 0.91797 1.03757 0.98333 1.21368 0.95510 0.96347 0.87161 1.45695 1.05995 1.57236 1.27497 1.20118 0.83014 0.79275 0.85920 1.90704 1.56774 1.46742 1.50573 1.23372 1.00852 1.04509 0.99260 1.85629 0.99899 1.73427 1.33951 1.23179 0.96221 1.40140 1.09877 0.89748 1.26142 0.94698 0.96534 1.01845 1.70184 0.99928 1.44204 1.40523 0.84999 0.77324 0.78675 0.76967 1.18537 1.20533 1.18655 1.46094 1.66764 1.14671 1.09100 1.20875 0.76391 0.86686 0.85326 1.90684 1.51926 1.17961 1.85709 1.22548 1.01767 0.97231 0.91927 0.86693 1.21869 0.97509 0.98068 0.94011 1.23702 1.05648 0.95446 0.93475 0.85400 1.23515 0.94694 1.01675 0.98966 1.23271 0.97646 0.98049 1.00202 0.86482 1.21758 1.02210 0.96451 0.91443 0.94149 0.90500 0.90192 0.87572 0.87644 0.92384 0.93790 0.74307 0.87153 0.86884 0.92031 0.74930 0.88233 0.91586 0.89544 0.86823 0.91622 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.48 71.98 0.68 -1.02 16 2 C 0.14 1.96 2.57 44.99 0.12 2.08 16 3 H 0.06 1.28 7.58 -2.39 -0.02 1.27 16 4 C -0.12 -1.21 4.87 30.60 0.15 -1.06 16 5 C 0.12 2.38 5.56 86.38 0.48 2.86 16 6 N -0.71 -15.82 5.56 -463.05 -2.57 -18.39 16 7 C 0.53 18.87 7.85 87.66 0.69 19.56 16 8 O -0.57 -26.32 15.86 -3.04 -0.05 -26.37 16 9 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 10 S -0.16 -8.61 20.57 -56.49 -1.16 -9.77 16 11 C -0.55 -30.84 9.50 67.95 0.65 -30.20 16 12 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 13 C 0.01 0.71 5.49 84.85 0.47 1.17 16 14 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 15 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 N -0.71 -9.76 4.53 -442.53 -2.00 -11.76 16 20 C 0.52 10.13 7.11 87.66 0.62 10.75 16 21 O -0.58 -16.53 15.39 -3.05 -0.05 -16.58 16 22 C -0.11 -1.69 3.28 -10.25 -0.03 -1.72 16 23 H 0.12 1.50 8.14 -2.39 -0.02 1.49 16 24 C -0.08 -0.80 6.08 31.67 0.19 -0.61 16 25 C -0.16 -1.75 7.04 -9.22 -0.06 -1.82 16 26 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 27 C -0.15 -1.71 10.21 31.45 0.32 -1.39 16 28 C -0.17 -2.31 6.85 -10.07 -0.07 -2.38 16 29 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 30 C -0.08 -1.41 5.69 31.67 0.18 -1.23 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 1.28 7.75 -2.39 -0.02 1.26 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 5.92 8.47 -92.71 -0.79 5.13 16 39 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 40 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.41 3.48 8.60 -92.71 -0.80 2.68 16 43 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.79 8.04 -2.38 -0.02 0.77 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.30 7.44 -2.39 -0.02 1.29 16 Total: -1.00 -83.73 409.89 0.67 -83.05 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.62 Total: 19.82 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 4.82 Total: -9.47 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -4.29 Total: -85.78 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.10 Total: -42.94 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -83.73 0.67 -83.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.277 kcal (2) G-P(sol) polarization free energy of solvation -83.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds