Wall clock time and date at job start Sat Apr 11 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00119 * 179.97438 * 7 6 5 10 10 H 1.08997 * 115.55657 * 34.34167 * 9 7 6 11 11 C 1.53127 * 117.51370 * 248.60926 * 9 7 6 12 12 C 1.52458 * 117.51525 * 180.14596 * 9 7 6 13 13 C 1.53255 * 128.58337 * 349.84751 * 12 9 7 14 14 C 1.53897 * 86.87988 * 194.88802 * 13 12 9 15 15 C 1.53255 * 128.58386 * 225.04585 * 12 9 7 16 16 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 17 17 C 1.34777 * 119.99525 * 84.99977 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 35 35 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 36 36 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 37 37 H 1.08995 * 117.51191 * 359.97438 * 11 9 7 38 38 H 1.09000 * 117.51090 * 145.05729 * 11 9 7 39 39 H 1.08996 * 113.64803 * 309.38539 * 13 12 9 40 40 H 1.08997 * 113.64427 * 80.39436 * 13 12 9 41 41 H 1.08994 * 113.58973 * 270.38840 * 14 13 12 42 42 H 1.09000 * 113.65764 * 139.58292 * 14 13 12 43 43 H 1.08995 * 113.64920 * 279.60972 * 15 12 9 44 44 H 1.09008 * 113.64642 * 50.61567 * 15 12 9 45 45 H 0.97000 * 120.00580 * 265.00723 * 16 2 1 46 46 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 47 47 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 48 48 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.7998 2.0242 9 6 5.8763 -2.0499 4.0060 10 1 5.3162 -2.9383 4.2977 11 6 6.4729 -1.1910 5.1245 12 6 7.3807 -2.0520 4.2532 13 6 8.5047 -1.6065 3.3115 14 6 9.4723 -2.3443 4.2537 15 6 8.2788 -3.2211 4.6719 16 7 2.0185 -0.6908 -1.1960 17 6 2.1472 -0.0185 -2.3570 18 8 1.8591 1.1584 -2.4116 19 6 2.6554 -0.7275 -3.5859 20 16 2.7226 0.4369 -4.9699 21 6 3.3326 -0.6266 -6.2353 22 1 3.5410 -1.6633 -6.0155 23 6 3.5443 -0.1325 -7.5150 24 7 3.2888 1.1306 -7.7834 25 14 4.1903 -1.2601 -8.8567 26 1 4.3951 -2.6225 -8.3022 27 1 3.2076 -1.3203 -9.9685 28 1 5.4823 -0.7341 -9.3659 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.9995 -1.0728 0.4262 35 1 3.8531 0.4371 1.3574 36 1 3.4257 -1.7356 3.1109 37 1 6.5024 -0.1125 4.9699 38 1 6.3053 -1.5146 6.1518 39 1 8.4420 -2.0473 2.3166 40 1 8.6541 -0.5271 3.2892 41 1 9.8580 -1.7195 5.0593 42 1 10.2561 -2.8941 3.7327 43 1 8.2473 -3.4360 5.7400 44 1 8.1533 -4.1114 4.0556 45 1 2.2491 -1.6319 -1.1524 46 1 3.6539 -1.1197 -3.3923 47 1 1.9842 -1.5494 -3.8349 48 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076536089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:52 Heat of formation + Delta-G solvation = -40.718811 kcal Electronic energy + Delta-G solvation = -26194.526467 eV Core-core repulsion = 22376.718285 eV Total energy + Delta-G solvation = -3817.808182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.66953 -39.50410 -38.71193 -36.57494 -34.60590 -34.02259 -32.40745 -31.80778 -29.49057 -28.46122 -26.00055 -25.47047 -25.13606 -23.43324 -22.85800 -21.59860 -20.45643 -20.28619 -18.74026 -17.84790 -17.40418 -16.59842 -16.41808 -16.05773 -15.56824 -15.45862 -15.26627 -14.91521 -14.78435 -14.60864 -14.20750 -13.74795 -13.62803 -13.23655 -13.06085 -12.89138 -12.68559 -12.63280 -12.38982 -12.14315 -11.93660 -11.91160 -11.82427 -11.70687 -11.52232 -11.08960 -11.04815 -10.99507 -10.73549 -10.69385 -10.45365 -10.17264 -9.89697 -9.78324 -9.37024 -9.33915 -9.05762 -8.90199 -8.20773 -6.47340 -6.19704 -3.89805 2.25127 2.78938 3.04930 3.11604 3.23261 3.29806 3.34613 3.37131 3.72953 3.97859 4.22407 4.23288 4.33995 4.42324 4.46511 4.55137 4.61033 4.74858 4.77727 5.02726 5.15153 5.15595 5.17209 5.22986 5.24581 5.31419 5.33996 5.37268 5.48838 5.53268 5.56389 5.57108 5.62292 5.68081 5.77374 5.84820 5.91469 5.97562 6.00660 6.10287 6.14497 6.16136 6.18035 6.66302 7.21509 7.62039 7.71547 8.00398 8.37607 8.63435 9.25805 10.87791 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.002080 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.663435 B =13459.744937 C =15552.189593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.730 5.730 7 C 0.539 3.461 8 O -0.528 6.528 9 C -0.181 4.181 10 H 0.122 0.878 11 C -0.122 4.122 12 C -0.126 4.126 13 C -0.083 4.083 14 C -0.143 4.143 15 C -0.099 4.099 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.397 0.603 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -10.290 30.432 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.382 5.382 7 C 0.325 3.675 8 O -0.404 6.404 9 C -0.202 4.202 10 H 0.140 0.860 11 C -0.159 4.159 12 C -0.127 4.127 13 C -0.121 4.121 14 C -0.180 4.180 15 C -0.136 4.136 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.231 0.769 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.545 -7.761 29.635 30.740 hybrid contribution 0.279 -2.823 -0.507 2.881 sum 2.824 -10.584 29.128 31.120 Atomic orbital electron populations 1.22172 0.95025 1.02080 1.02828 1.20777 0.94144 0.97747 0.83240 0.89084 1.22102 0.94597 1.02013 0.98783 1.21411 0.93551 0.98005 0.87662 1.45960 1.07429 1.57563 1.27201 1.19668 0.82068 0.79823 0.85903 1.90747 1.55268 1.45221 1.49132 1.22154 0.98388 1.02675 0.97019 0.86020 1.22797 1.00361 0.98009 0.94766 1.22321 0.88591 1.00285 1.01458 1.22343 0.91735 1.00789 0.97195 1.22818 0.96356 0.98956 0.99886 1.22513 0.94355 0.95710 1.01021 1.46126 1.69505 1.13868 1.09561 1.20296 0.76732 0.87208 0.83752 1.90699 1.48297 1.15701 1.84352 1.23539 1.03634 1.04861 0.98449 1.85384 1.86017 1.12956 0.99008 1.22908 1.50672 0.98170 0.96489 0.90906 1.24998 0.95146 0.95549 0.97968 1.70031 1.45609 1.13187 1.21469 0.86114 0.78535 0.80134 0.80693 1.19634 1.20584 1.20558 0.92549 0.91885 0.91426 0.89774 0.90662 0.90908 0.91160 0.76706 0.88020 0.87603 0.89280 0.91181 0.90147 0.91128 0.91262 0.89552 0.76941 0.89244 0.89290 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 2 C 0.15 1.56 2.57 -67.93 -0.17 1.39 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C 0.12 1.10 5.56 -4.04 -0.02 1.08 16 6 N -0.73 -5.73 5.56 -60.29 -0.33 -6.07 16 7 C 0.54 5.61 7.61 -10.99 -0.08 5.53 16 8 O -0.53 -7.85 15.14 5.55 0.08 -7.76 16 9 C -0.18 -1.35 6.19 -91.98 -0.57 -1.92 16 10 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 11 C -0.12 -0.80 10.24 -26.94 -0.28 -1.07 16 12 C -0.13 -1.00 2.87 -154.80 -0.45 -1.44 16 13 C -0.08 -0.78 6.47 -26.13 -0.17 -0.95 16 14 C -0.14 -0.98 8.08 -25.80 -0.21 -1.19 16 15 C -0.10 -0.62 8.10 -26.14 -0.21 -0.83 16 16 N -0.74 -9.42 4.53 -53.80 -0.24 -9.67 16 17 C 0.53 9.89 7.81 -10.98 -0.09 9.80 16 18 O -0.52 -11.64 15.52 5.55 0.09 -11.55 16 19 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 25 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.40 1.84 8.47 -40.82 -0.35 1.49 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 45 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 46 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 47 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -37.00 413.27 -10.51 -47.50 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.22 Total: 2.25 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.60 Total: -8.02 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.16 Total: -41.47 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.17 Total: -19.32 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.00 -10.51 -47.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076536089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.783 kcal (2) G-P(sol) polarization free energy of solvation -36.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds