Wall clock time and date at job start Sat Apr 11 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00119 * 179.97438 * 7 6 5 10 10 H 1.08997 * 115.55657 * 34.34167 * 9 7 6 11 11 C 1.53127 * 117.51370 * 248.60926 * 9 7 6 12 12 C 1.52458 * 117.51525 * 180.14596 * 9 7 6 13 13 C 1.53255 * 128.58337 * 349.84751 * 12 9 7 14 14 C 1.53897 * 86.87988 * 194.88802 * 13 12 9 15 15 C 1.53255 * 128.58386 * 225.04585 * 12 9 7 16 16 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 17 17 C 1.34777 * 119.99525 * 84.99977 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 35 35 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 36 36 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 37 37 H 1.08995 * 117.51191 * 359.97438 * 11 9 7 38 38 H 1.09000 * 117.51090 * 145.05729 * 11 9 7 39 39 H 1.08996 * 113.64803 * 309.38539 * 13 12 9 40 40 H 1.08997 * 113.64427 * 80.39436 * 13 12 9 41 41 H 1.08994 * 113.58973 * 270.38840 * 14 13 12 42 42 H 1.09000 * 113.65764 * 139.58292 * 14 13 12 43 43 H 1.08995 * 113.64920 * 279.60972 * 15 12 9 44 44 H 1.09008 * 113.64642 * 50.61567 * 15 12 9 45 45 H 0.97000 * 120.00580 * 265.00723 * 16 2 1 46 46 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 47 47 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 48 48 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.7998 2.0242 9 6 5.8763 -2.0499 4.0060 10 1 5.3162 -2.9383 4.2977 11 6 6.4729 -1.1910 5.1245 12 6 7.3807 -2.0520 4.2532 13 6 8.5047 -1.6065 3.3115 14 6 9.4723 -2.3443 4.2537 15 6 8.2788 -3.2211 4.6719 16 7 2.0185 -0.6908 -1.1960 17 6 2.1472 -0.0185 -2.3570 18 8 1.8591 1.1584 -2.4116 19 6 2.6554 -0.7275 -3.5859 20 16 2.7226 0.4369 -4.9699 21 6 3.3326 -0.6266 -6.2353 22 1 3.5410 -1.6633 -6.0155 23 6 3.5443 -0.1325 -7.5150 24 7 3.2888 1.1306 -7.7834 25 14 4.1903 -1.2601 -8.8567 26 1 4.3951 -2.6225 -8.3022 27 1 3.2076 -1.3203 -9.9685 28 1 5.4823 -0.7341 -9.3659 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.9995 -1.0728 0.4262 35 1 3.8531 0.4371 1.3574 36 1 3.4257 -1.7356 3.1109 37 1 6.5024 -0.1125 4.9699 38 1 6.3053 -1.5146 6.1518 39 1 8.4420 -2.0473 2.3166 40 1 8.6541 -0.5271 3.2892 41 1 9.8580 -1.7195 5.0593 42 1 10.2561 -2.8941 3.7327 43 1 8.2473 -3.4360 5.7400 44 1 8.1533 -4.1114 4.0556 45 1 2.2491 -1.6319 -1.1524 46 1 3.6539 -1.1197 -3.3923 47 1 1.9842 -1.5494 -3.8349 48 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076536089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:51 Heat of formation + Delta-G solvation = -66.742460 kcal Electronic energy + Delta-G solvation = -26195.654937 eV Core-core repulsion = 22376.718285 eV Total energy + Delta-G solvation = -3818.936652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.38095 -40.80300 -39.47195 -37.63717 -35.58451 -34.62577 -34.60355 -33.02540 -30.53888 -29.72144 -27.68188 -26.60292 -25.84990 -23.98061 -23.63252 -22.56089 -21.65803 -21.13997 -19.85872 -19.33369 -18.19148 -17.92978 -17.37398 -17.03163 -16.90025 -16.47681 -16.39088 -16.10957 -15.96240 -15.78045 -15.40507 -14.82989 -14.80346 -14.50573 -14.40789 -13.99934 -13.72771 -13.33353 -13.25070 -13.18256 -13.04760 -13.00383 -12.92841 -12.60648 -12.49927 -12.43193 -12.40404 -12.31913 -11.92740 -11.72151 -11.30237 -11.17740 -11.04206 -10.93185 -10.84088 -10.60925 -10.29745 -10.19205 -10.05767 -8.68741 -8.36782 -6.14857 1.25480 1.39689 1.45424 1.48862 1.56881 1.61625 2.09097 2.24484 2.30268 2.78030 2.97217 3.30348 3.40194 3.66532 3.72545 3.77507 3.85815 3.88065 3.96173 3.99967 4.07505 4.15079 4.26743 4.41802 4.46941 4.48423 4.50016 4.60852 4.66297 4.79633 4.81344 4.84389 4.87931 4.88328 5.00734 5.05117 5.08073 5.13297 5.14427 5.32778 5.38754 5.39819 5.41945 5.50159 5.55101 6.17950 6.50491 6.57554 7.04418 7.25765 7.28668 8.72778 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.002080 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.663435 B =13459.744937 C =15552.189593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.119 3.881 6 N -0.710 5.710 7 C 0.530 3.470 8 O -0.584 6.584 9 C -0.179 4.179 10 H 0.155 0.845 11 C -0.108 4.108 12 C -0.144 4.144 13 C -0.098 4.098 14 C -0.137 4.137 15 C -0.086 4.086 16 N -0.710 5.710 17 C 0.535 3.465 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.011 3.989 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.257 1.257 27 H -0.272 1.272 28 H -0.274 1.274 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.420 0.580 37 H 0.086 0.914 38 H 0.138 0.862 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.414 0.586 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -13.850 33.293 36.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.317 3.683 8 O -0.464 6.464 9 C -0.200 4.200 10 H 0.173 0.827 11 C -0.145 4.145 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.174 4.174 15 C -0.123 4.123 16 N -0.364 5.364 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.075 5.925 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.181 1.181 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.258 0.742 37 H 0.104 0.896 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.251 0.749 46 H 0.122 0.878 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.805 -11.384 32.573 34.552 hybrid contribution 0.479 -1.681 -1.292 2.173 sum 2.284 -13.065 31.281 33.976 Atomic orbital electron populations 1.22117 0.93766 1.03285 1.02313 1.20993 0.95053 0.96758 0.83552 0.91955 1.21991 0.92238 1.03594 0.97579 1.21265 0.95342 0.96391 0.87552 1.45772 1.07145 1.56635 1.26764 1.20337 0.82343 0.79229 0.86350 1.90734 1.56778 1.47691 1.51199 1.22234 0.98238 1.03655 0.95824 0.82717 1.22889 0.98621 0.97041 0.95914 1.22460 0.88707 1.01490 1.01759 1.22307 0.94783 0.99446 0.97065 1.22820 0.96444 0.98850 0.99292 1.22458 0.92679 0.94851 1.02293 1.45911 1.67523 1.14511 1.08477 1.20008 0.76664 0.86569 0.84726 1.90686 1.50777 1.17679 1.85160 1.23387 1.05210 1.03296 0.96340 1.85556 1.86412 1.17466 1.03042 1.23229 1.50748 0.98411 0.96968 0.90029 1.26158 0.95116 0.97264 1.00776 1.70193 1.46817 1.15450 1.22302 0.84887 0.77847 0.78147 0.76941 1.18083 1.19693 1.19968 0.90394 0.89292 0.95123 0.86782 0.87579 0.93182 0.93865 0.74236 0.89553 0.84370 0.91828 0.93479 0.89231 0.90828 0.89072 0.89375 0.74886 0.87842 0.87125 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.48 71.98 0.68 -2.11 16 2 C 0.14 2.82 2.57 45.00 0.12 2.94 16 3 H 0.06 1.65 7.58 -2.39 -0.02 1.64 16 4 C -0.12 -1.24 4.87 30.60 0.15 -1.09 16 5 C 0.12 2.12 5.56 86.38 0.48 2.60 16 6 N -0.71 -9.74 5.56 -463.04 -2.57 -12.31 16 7 C 0.53 10.71 7.61 87.66 0.67 11.38 16 8 O -0.58 -18.32 15.14 -3.04 -0.05 -18.37 16 9 C -0.18 -2.26 6.19 -11.68 -0.07 -2.33 16 10 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 11 C -0.11 -1.16 10.24 30.46 0.31 -0.85 16 12 C -0.14 -2.09 2.87 -52.37 -0.15 -2.25 16 13 C -0.10 -1.96 6.47 30.98 0.20 -1.76 16 14 C -0.14 -1.78 8.08 31.19 0.25 -1.53 16 15 C -0.09 -0.89 8.10 30.98 0.25 -0.64 16 16 N -0.71 -17.45 4.53 -442.52 -2.00 -19.45 16 17 C 0.53 20.11 7.81 87.66 0.68 20.80 16 18 O -0.56 -26.69 15.52 -3.04 -0.05 -26.74 16 19 C -0.13 -5.38 6.16 71.24 0.44 -4.94 16 20 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 21 C -0.55 -31.99 9.50 67.95 0.65 -31.34 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 23 C 0.01 0.67 5.49 84.86 0.47 1.14 16 24 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 25 Si 1.00 44.64 29.55 68.60 2.03 46.67 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 35 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.42 2.23 8.47 -92.71 -0.79 1.44 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 1.54 8.05 -2.39 -0.02 1.52 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 44 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.41 7.40 8.60 -92.71 -0.80 6.60 16 46 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 47 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 48 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -88.20 413.27 0.98 -87.22 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.62 Total: 19.66 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.12 Total: -10.00 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -4.29 Total: -88.59 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.09 Total: -45.11 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -88.20 0.98 -87.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076536089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.477 kcal (2) G-P(sol) polarization free energy of solvation -88.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds