Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.52994 * 110.34730 * 302.28743 * 9 7 6 11 11 C 1.51108 * 110.38561 * 64.69533 * 9 7 6 12 12 C 1.30529 * 111.10045 * 135.24804 * 11 9 7 13 13 C 1.51095 * 111.10839 * 0.02562 * 12 11 9 14 14 C 1.54633 * 110.38763 * 179.97438 * 9 7 6 15 15 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 16 16 C 1.34774 * 120.00444 * 84.99314 * 15 2 1 17 17 O 1.21282 * 119.99907 * 0.02562 * 16 15 2 18 18 C 1.50696 * 120.00466 * 180.02562 * 16 15 2 19 19 S 1.80993 * 109.47673 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00460 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00121 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00458 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99692 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00435 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46801 * 89.99504 * 24 22 20 26 26 H 1.48493 * 109.47166 * 209.99972 * 24 22 20 27 27 H 1.48499 * 109.47023 * 330.00243 * 24 22 20 28 28 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 29 29 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 31 31 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 32 32 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 35 35 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 36 36 H 1.09002 * 109.47164 * 59.29610 * 10 9 7 37 37 H 1.09003 * 109.47478 * 179.29679 * 10 9 7 38 38 H 1.09003 * 109.47386 * 299.29860 * 10 9 7 39 39 H 1.08000 * 124.44942 * 315.22829 * 11 9 7 40 40 H 1.08002 * 124.44577 * 180.02562 * 12 11 9 41 41 H 1.08995 * 110.38712 * 224.75440 * 13 12 11 42 42 H 1.08994 * 110.39151 * 102.37350 * 13 12 11 43 43 H 1.09000 * 111.03779 * 334.58702 * 14 9 7 44 44 H 1.08997 * 111.03470 * 98.48395 * 14 9 7 45 45 H 0.97001 * 119.99762 * 264.99736 * 15 2 1 46 46 H 1.09004 * 109.47221 * 300.00615 * 18 16 15 47 47 H 1.09002 * 109.47090 * 59.99722 * 18 16 15 48 48 H 0.97000 * 120.00227 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 7 4.0533 -1.3044 2.5093 7 6 5.3743 -1.3407 2.7744 8 8 6.1586 -0.8015 2.0228 9 6 5.8767 -2.0512 4.0048 10 6 5.2352 -1.4581 5.2608 11 6 5.5881 -3.5316 3.9124 12 6 6.6253 -4.2361 4.2755 13 6 7.7781 -3.3431 4.6711 14 6 7.4177 -1.9562 4.0902 15 7 2.0183 -0.6904 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8588 1.1588 -2.4115 18 6 2.6487 -0.7284 -3.5878 19 16 2.7104 0.4348 -4.9731 20 6 3.3135 -0.6303 -6.2405 21 1 3.5229 -1.6667 -6.0207 22 6 3.5205 -0.1371 -7.5213 23 7 3.2658 1.1263 -7.7892 24 14 4.1606 -1.2661 -8.8649 25 1 3.0153 -1.9031 -9.5634 26 1 4.9566 -0.4758 -9.8380 27 1 5.0186 -2.3170 -8.2611 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.7517 -1.7716 1.2054 32 1 1.6054 -0.2618 2.1369 33 1 3.9995 -1.0727 0.4258 34 1 3.8532 0.4370 1.3572 35 1 3.4260 -1.7360 3.1103 36 1 4.1517 -1.5585 5.1974 37 1 5.5986 -1.9900 6.1401 38 1 5.4984 -0.4033 5.3397 39 1 4.6473 -3.9516 3.5888 40 1 6.6555 -5.3155 4.2911 41 1 8.7078 -3.7072 4.2339 42 1 7.8629 -3.2907 5.7565 43 1 7.8567 -1.8194 3.1019 44 1 7.7236 -1.1575 4.7658 45 1 2.2491 -1.6316 -1.1527 46 1 3.6479 -1.1210 -3.3988 47 1 1.9759 -1.5503 -3.8327 48 1 3.4102 1.4709 -8.6844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077866408.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -101.145854 kcal Electronic energy + Delta-G solvation = -26548.351536 eV Core-core repulsion = 22727.923041 eV Total energy + Delta-G solvation = -3820.428496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58934 -40.79142 -38.92364 -37.61652 -35.66952 -34.60037 -33.16865 -32.23956 -30.43106 -29.91444 -29.42903 -27.67473 -26.48585 -24.77236 -22.64309 -22.56170 -21.60346 -20.80673 -19.95107 -19.70367 -18.19684 -17.94049 -17.46423 -16.91228 -16.87546 -16.61636 -16.39816 -16.12664 -15.81619 -15.68004 -14.90732 -14.79577 -14.48727 -14.44377 -14.32816 -14.02320 -13.83190 -13.41959 -13.31663 -13.18420 -13.04122 -12.99127 -12.90041 -12.62612 -12.61538 -12.48156 -12.43755 -12.20327 -12.18773 -11.91344 -11.75641 -11.73497 -11.15654 -10.93134 -10.86026 -10.29622 -10.21137 -10.06278 -9.87449 -8.68223 -8.36128 -6.14277 1.21955 1.25810 1.41087 1.45683 1.56559 1.62420 1.67163 2.16797 2.25150 2.31084 2.97757 3.30934 3.44053 3.58195 3.73163 3.80700 3.96056 4.01386 4.02626 4.08885 4.27242 4.30793 4.37775 4.42614 4.47828 4.49265 4.59193 4.64564 4.77453 4.79598 4.82046 4.88736 4.96560 4.97384 5.03731 5.13724 5.17457 5.19527 5.30263 5.33657 5.39960 5.42036 5.54087 5.56019 5.93185 6.18181 6.50968 6.53692 7.04911 7.24469 7.26647 8.73161 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.002100 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.781827 B =13328.688326 C =14893.568997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.709 5.709 7 C 0.517 3.483 8 O -0.590 6.590 9 C -0.054 4.054 10 C -0.129 4.129 11 C -0.170 4.170 12 C -0.149 4.149 13 C -0.102 4.102 14 C -0.117 4.117 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.260 1.260 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.418 0.582 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.414 0.586 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -14.619 33.174 36.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.362 5.362 7 C 0.304 3.696 8 O -0.470 6.470 9 C -0.057 4.057 10 C -0.186 4.186 11 C -0.188 4.188 12 C -0.167 4.167 13 C -0.139 4.139 14 C -0.155 4.155 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.251 0.749 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.087 -12.136 32.464 34.658 hybrid contribution 0.669 -1.790 -1.161 2.236 sum 0.583 -13.926 31.303 34.266 Atomic orbital electron populations 1.22116 0.93766 1.03274 1.02305 1.20991 0.95042 0.96778 0.83531 0.91924 1.21995 0.92201 1.03613 0.97625 1.21293 0.95390 0.96488 0.87575 1.45808 1.07203 1.56408 1.26768 1.21120 0.82368 0.79012 0.87070 1.90711 1.56833 1.47922 1.51532 1.20720 0.97179 0.94655 0.93188 1.21774 1.01551 1.00552 0.94730 1.23138 1.00741 0.91887 1.03052 1.23575 0.94835 1.00370 0.97884 1.21444 0.98015 0.92627 1.01838 1.22524 0.92737 0.98658 1.01550 1.45909 1.67512 1.14498 1.08494 1.20003 0.76651 0.86581 0.84738 1.90686 1.50703 1.17688 1.85200 1.23385 1.05239 1.03288 0.96318 1.85551 1.86659 1.17438 1.02802 1.23196 1.50993 0.98400 0.96852 0.90034 1.26154 0.95082 0.97254 1.00791 1.70187 1.46857 1.15441 1.22259 0.84939 0.78460 0.77702 0.76784 1.19066 1.20258 1.18349 0.95151 0.90404 0.89277 0.87567 0.86722 0.93170 0.93701 0.74386 0.90068 0.89861 0.92560 0.83614 0.83573 0.90712 0.88599 0.92508 0.89971 0.74899 0.87875 0.87119 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 71.98 0.68 -2.07 16 2 C 0.14 2.79 2.57 44.99 0.12 2.90 16 3 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 4 C -0.12 -1.21 4.87 30.59 0.15 -1.07 16 5 C 0.12 2.07 5.56 86.38 0.48 2.55 16 6 N -0.71 -9.82 5.42 -463.07 -2.51 -12.33 16 7 C 0.52 10.71 6.55 87.66 0.57 11.28 16 8 O -0.59 -19.08 15.48 -3.01 -0.05 -19.13 16 9 C -0.05 -0.74 0.74 -52.99 -0.04 -0.78 16 10 C -0.13 -1.04 8.38 71.98 0.60 -0.44 16 11 C -0.17 -1.76 9.37 26.26 0.25 -1.52 16 12 C -0.15 -1.47 10.77 26.26 0.28 -1.18 16 13 C -0.10 -1.11 6.81 30.53 0.21 -0.90 16 14 C -0.12 -1.89 6.01 31.70 0.19 -1.70 16 15 N -0.71 -17.32 4.53 -442.55 -2.00 -19.32 16 16 C 0.53 20.04 7.81 87.66 0.68 20.72 16 17 O -0.56 -26.58 15.52 -3.03 -0.05 -26.63 16 18 C -0.13 -5.37 6.16 71.23 0.44 -4.93 16 19 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 20 C -0.55 -32.01 9.50 67.95 0.65 -31.36 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -57.08 13.22 21.65 0.29 -56.79 16 24 Si 1.00 44.58 29.55 68.60 2.03 46.60 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.42 2.39 7.81 -92.70 -0.72 1.67 16 36 H 0.08 0.33 7.50 -2.39 -0.02 0.31 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 1.31 7.00 -2.39 -0.02 1.29 16 44 H 0.08 1.18 7.90 -2.39 -0.02 1.16 16 45 H 0.41 7.33 8.60 -92.71 -0.80 6.53 16 46 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 47 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 48 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -88.21 409.76 1.71 -86.50 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -0.56 Total: 18.26 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.73 Total: -7.34 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -4.23 Total: -88.44 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.09 Total: -45.76 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -88.21 1.71 -86.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077866408.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.642 kcal (2) G-P(sol) polarization free energy of solvation -88.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds