Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.51582 * 135.78312 * 2 1 4 4 C 1.53841 * 86.75503 * 154.84609 * 3 2 1 5 5 C 1.53002 * 113.65467 * 270.21922 * 4 3 2 6 6 C 1.50703 * 113.65382 * 139.27158 * 4 3 2 7 7 O 1.21281 * 120.00031 * 0.02562 * 6 4 3 8 8 N 1.34777 * 119.99435 * 179.97438 * 6 4 3 9 9 C 1.46506 * 119.99713 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47151 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47075 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.47080 * 304.99674 * 11 10 9 13 13 C 1.53000 * 109.47023 * 185.00349 * 11 10 9 14 14 N 1.46499 * 109.47455 * 65.00270 * 11 10 9 15 15 C 1.34777 * 120.00199 * 205.00257 * 14 11 10 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 11 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 11 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00384 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46990 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47522 * 119.99735 * 23 21 19 26 26 H 1.48500 * 109.47073 * 240.00101 * 23 21 19 27 27 C 1.51583 * 135.78261 * 179.97438 * 2 1 3 28 28 H 1.08002 * 119.99875 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99670 * 179.97438 * 1 2 3 30 30 H 1.09003 * 113.66390 * 40.37818 * 3 2 1 31 31 H 1.09001 * 113.74716 * 269.32433 * 3 2 1 32 32 H 1.09001 * 109.47473 * 298.33378 * 5 4 3 33 33 H 1.08998 * 109.46949 * 58.34260 * 5 4 3 34 34 H 1.09000 * 109.46550 * 178.33872 * 5 4 3 35 35 H 0.97002 * 120.00489 * 0.02562 * 8 6 4 36 36 H 1.09000 * 109.47201 * 60.00054 * 9 8 6 37 37 H 1.09000 * 109.47234 * 299.99934 * 9 8 6 38 38 H 1.09000 * 109.46867 * 60.00041 * 10 9 8 39 39 H 1.09000 * 109.47154 * 300.00175 * 10 9 8 40 40 H 1.09005 * 109.47473 * 179.97438 * 13 11 10 41 41 H 1.08998 * 109.46925 * 299.99562 * 13 11 10 42 42 H 1.08998 * 109.47598 * 59.99967 * 13 11 10 43 43 H 0.97000 * 119.99484 * 24.99354 * 14 11 10 44 44 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 45 45 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 46 46 H 0.97002 * 120.00288 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.66227 * 90.68745 * 27 2 1 48 48 H 1.08997 * 113.66892 * 319.62188 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 -0.0001 0.6529 5 6 3.2461 0.0015 2.1818 6 6 4.7130 0.0000 0.1193 7 8 5.0344 0.7883 -0.7445 8 7 5.6165 -0.8753 0.6030 9 6 6.9869 -0.8749 0.0847 10 6 7.8018 -1.9563 0.7970 11 6 9.2326 -1.9564 0.2554 12 1 9.2109 -2.0716 -0.8283 13 6 10.0129 -3.1169 0.8761 14 7 9.8849 -0.6904 0.5989 15 6 10.9077 -0.2340 -0.1509 16 8 11.2883 -0.8717 -1.1097 17 6 11.5827 1.0652 0.2062 18 16 12.9122 1.3991 -0.9757 19 6 13.5101 2.9294 -0.3393 20 1 13.0520 3.3663 0.5357 21 6 14.5706 3.5730 -0.9618 22 7 15.1300 3.0398 -2.0275 23 14 15.2051 5.1951 -0.2867 24 1 14.4121 5.5776 0.9091 25 1 16.6334 5.0489 0.0920 26 1 15.0736 6.2487 -1.3250 27 6 2.3964 -1.0571 0.0005 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.1796 1.9073 0.6468 31 1 2.7192 1.3548 -0.9976 32 1 3.5890 0.9656 2.5574 33 1 2.2202 -0.1712 2.5070 34 1 3.8883 -0.7889 2.5702 35 1 5.3596 -1.5056 1.2941 36 1 7.4424 0.0992 0.2629 37 1 6.9704 -1.0780 -0.9860 38 1 7.3464 -2.9306 0.6193 39 1 7.8182 -1.7528 1.8677 40 1 11.0322 -3.1173 0.4899 41 1 10.0346 -3.0017 1.9597 42 1 9.5277 -4.0589 0.6205 43 1 9.5806 -0.1805 1.3659 44 1 10.8537 1.8749 0.1713 45 1 11.9990 0.9942 1.2110 46 1 15.8710 3.4898 -2.4628 47 1 2.7183 -1.3541 -0.9977 48 1 2.1797 -1.9070 0.6476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078279786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -47.944310 kcal Electronic energy + Delta-G solvation = -26341.718072 eV Core-core repulsion = 22523.596568 eV Total energy + Delta-G solvation = -3818.121503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01477 -39.49129 -38.34420 -36.56522 -34.70198 -32.41107 -32.24659 -31.61335 -29.38920 -28.46961 -28.13620 -26.38187 -25.46959 -24.67546 -22.63075 -21.60011 -20.34940 -19.91397 -18.20007 -17.82791 -17.27793 -16.62463 -16.47159 -15.97784 -15.72575 -15.16058 -15.01436 -14.87533 -14.78673 -14.62800 -14.24465 -13.94075 -13.72110 -13.57654 -13.23543 -12.96843 -12.89865 -12.64204 -12.62540 -12.30810 -12.14633 -11.96462 -11.91491 -11.73743 -11.56033 -11.33340 -11.09387 -11.05082 -10.99777 -10.73703 -10.67479 -9.98161 -9.78598 -9.53445 -9.38295 -9.36908 -9.06021 -8.90757 -8.21089 -6.47595 -6.19958 -3.90108 1.76829 2.32776 2.84783 3.04579 3.11156 3.23053 3.29619 3.34355 3.72518 3.84855 3.97957 4.06284 4.22155 4.40670 4.43970 4.48667 4.69803 4.73442 4.87086 5.10353 5.15294 5.16553 5.19924 5.21938 5.26072 5.27376 5.30628 5.35575 5.42904 5.50039 5.55022 5.60967 5.65248 5.67714 5.73799 5.76828 5.91131 5.98073 5.99964 6.11212 6.15506 6.17504 6.46028 6.65731 7.16655 7.61804 7.71029 7.93873 8.37350 8.62991 9.25589 10.87539 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.001955 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.035951 B =14317.686567 C =15705.423818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.148 4.148 3 C -0.083 4.083 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.526 3.474 7 O -0.531 6.531 8 N -0.729 5.729 9 C 0.115 3.885 10 C -0.137 4.137 11 C 0.147 3.853 12 H 0.091 0.909 13 C -0.163 4.163 14 N -0.736 5.736 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.088 4.088 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.399 0.601 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.096 0.904 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.291 -12.097 11.518 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.120 4.120 4 C -0.109 4.109 5 C -0.183 4.183 6 C 0.312 3.688 7 O -0.407 6.407 8 N -0.381 5.381 9 C -0.008 4.008 10 C -0.175 4.175 11 C 0.041 3.959 12 H 0.109 0.891 13 C -0.221 4.221 14 N -0.391 5.391 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.125 4.125 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.247 -12.576 9.130 31.367 hybrid contribution -0.230 1.693 2.291 2.858 sum -27.477 -10.883 11.421 31.684 Atomic orbital electron populations 1.22890 0.93354 1.02270 1.02179 1.22764 0.93849 0.97962 1.00280 1.22261 0.91869 0.95504 1.02337 1.21974 0.91224 1.00464 0.97285 1.21577 1.02968 1.02781 0.91005 1.20304 0.86401 0.80156 0.81934 1.90748 1.79898 1.38845 1.31160 1.46024 1.11332 1.38104 1.42607 1.21437 0.80561 0.99987 0.98840 1.22102 0.94995 0.99600 1.00811 1.20774 0.89749 0.84231 1.01147 0.89081 1.22172 1.01734 0.97356 1.00840 1.46125 1.36259 1.23813 1.32863 1.20298 0.79029 0.86568 0.82097 1.90699 1.62555 1.58293 1.27488 1.23538 1.04071 0.96553 1.06319 1.85386 1.33921 1.28500 1.35550 1.22912 1.20794 1.07762 1.16822 0.90895 1.24993 0.95575 0.98297 0.94750 1.70030 1.22943 1.38587 1.18731 0.86118 0.78608 0.81924 0.78853 1.19631 1.20580 1.20561 1.22280 0.93092 0.95738 1.01368 0.87491 0.87608 0.90256 0.87478 0.91438 0.91132 0.91899 0.76684 0.90838 0.91097 0.89787 0.90646 0.91421 0.92545 0.91893 0.76942 0.89251 0.89281 0.92253 0.88573 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 14.71 29.01 0.43 -0.53 16 2 C -0.15 -1.00 6.60 -100.28 -0.66 -1.66 16 3 C -0.08 -0.66 6.98 -27.01 -0.19 -0.85 16 4 C -0.11 -0.76 1.27 -154.88 -0.20 -0.96 16 5 C -0.13 -0.63 8.98 37.16 0.33 -0.29 16 6 C 0.53 5.32 6.93 -10.98 -0.08 5.25 16 7 O -0.53 -7.94 15.90 5.56 0.09 -7.85 16 8 N -0.73 -5.51 5.44 -60.29 -0.33 -5.84 16 9 C 0.12 1.05 5.56 -4.04 -0.02 1.03 16 10 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 11 C 0.15 1.54 2.57 -67.93 -0.17 1.36 16 12 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 13 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 14 N -0.74 -9.30 4.53 -53.81 -0.24 -9.54 16 15 C 0.53 9.82 7.81 -10.98 -0.09 9.74 16 16 O -0.52 -11.58 15.53 5.55 0.09 -11.49 16 17 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 23 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.09 -0.54 7.18 -27.03 -0.19 -0.73 16 28 H 0.11 0.53 8.06 -52.49 -0.42 0.10 16 29 H 0.11 0.47 8.06 -52.49 -0.42 0.05 16 30 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.11 1.06 7.42 -51.93 -0.39 0.67 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.31 7.70 -51.93 -0.40 -0.09 16 34 H 0.06 0.21 7.04 -51.93 -0.37 -0.15 16 35 H 0.40 1.77 7.37 -40.82 -0.30 1.47 16 36 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.40 3.94 8.60 -40.82 -0.35 3.59 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 48 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 LS Contribution 413.43 15.07 6.23 6.23 Total: -1.00 -37.08 413.43 -8.92 -46.00 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.06 Total: 1.37 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.20 Total: -5.98 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.16 Total: -41.08 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.08 -8.92 -46.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078279786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.943 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds