Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.51582 * 135.78312 * 2 1 4 4 C 1.53841 * 86.75503 * 154.84609 * 3 2 1 5 5 C 1.53002 * 113.65467 * 270.21922 * 4 3 2 6 6 C 1.50703 * 113.65382 * 139.27158 * 4 3 2 7 7 O 1.21281 * 120.00031 * 0.02562 * 6 4 3 8 8 N 1.34777 * 119.99435 * 179.97438 * 6 4 3 9 9 C 1.46506 * 119.99713 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47151 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47075 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.47080 * 304.99674 * 11 10 9 13 13 C 1.53000 * 109.47023 * 185.00349 * 11 10 9 14 14 N 1.46499 * 109.47455 * 65.00270 * 11 10 9 15 15 C 1.34777 * 120.00199 * 205.00257 * 14 11 10 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 11 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 11 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00384 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46990 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47522 * 119.99735 * 23 21 19 26 26 H 1.48500 * 109.47073 * 240.00101 * 23 21 19 27 27 C 1.51583 * 135.78261 * 179.97438 * 2 1 3 28 28 H 1.08002 * 119.99875 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99670 * 179.97438 * 1 2 3 30 30 H 1.09003 * 113.66390 * 40.37818 * 3 2 1 31 31 H 1.09001 * 113.74716 * 269.32433 * 3 2 1 32 32 H 1.09001 * 109.47473 * 298.33378 * 5 4 3 33 33 H 1.08998 * 109.46949 * 58.34260 * 5 4 3 34 34 H 1.09000 * 109.46550 * 178.33872 * 5 4 3 35 35 H 0.97002 * 120.00489 * 0.02562 * 8 6 4 36 36 H 1.09000 * 109.47201 * 60.00054 * 9 8 6 37 37 H 1.09000 * 109.47234 * 299.99934 * 9 8 6 38 38 H 1.09000 * 109.46867 * 60.00041 * 10 9 8 39 39 H 1.09000 * 109.47154 * 300.00175 * 10 9 8 40 40 H 1.09005 * 109.47473 * 179.97438 * 13 11 10 41 41 H 1.08998 * 109.46925 * 299.99562 * 13 11 10 42 42 H 1.08998 * 109.47598 * 59.99967 * 13 11 10 43 43 H 0.97000 * 119.99484 * 24.99354 * 14 11 10 44 44 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 45 45 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 46 46 H 0.97002 * 120.00288 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.66227 * 90.68745 * 27 2 1 48 48 H 1.08997 * 113.66892 * 319.62188 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 -0.0001 0.6529 5 6 3.2461 0.0015 2.1818 6 6 4.7130 0.0000 0.1193 7 8 5.0344 0.7883 -0.7445 8 7 5.6165 -0.8753 0.6030 9 6 6.9869 -0.8749 0.0847 10 6 7.8018 -1.9563 0.7970 11 6 9.2326 -1.9564 0.2554 12 1 9.2109 -2.0716 -0.8283 13 6 10.0129 -3.1169 0.8761 14 7 9.8849 -0.6904 0.5989 15 6 10.9077 -0.2340 -0.1509 16 8 11.2883 -0.8717 -1.1097 17 6 11.5827 1.0652 0.2062 18 16 12.9122 1.3991 -0.9757 19 6 13.5101 2.9294 -0.3393 20 1 13.0520 3.3663 0.5357 21 6 14.5706 3.5730 -0.9618 22 7 15.1300 3.0398 -2.0275 23 14 15.2051 5.1951 -0.2867 24 1 14.4121 5.5776 0.9091 25 1 16.6334 5.0489 0.0920 26 1 15.0736 6.2487 -1.3250 27 6 2.3964 -1.0571 0.0005 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.1796 1.9073 0.6468 31 1 2.7192 1.3548 -0.9976 32 1 3.5890 0.9656 2.5574 33 1 2.2202 -0.1712 2.5070 34 1 3.8883 -0.7889 2.5702 35 1 5.3596 -1.5056 1.2941 36 1 7.4424 0.0992 0.2629 37 1 6.9704 -1.0780 -0.9860 38 1 7.3464 -2.9306 0.6193 39 1 7.8182 -1.7528 1.8677 40 1 11.0322 -3.1173 0.4899 41 1 10.0346 -3.0017 1.9597 42 1 9.5277 -4.0589 0.6205 43 1 9.5806 -0.1805 1.3659 44 1 10.8537 1.8749 0.1713 45 1 11.9990 0.9942 1.2110 46 1 15.8710 3.4898 -2.4628 47 1 2.7183 -1.3541 -0.9977 48 1 2.1797 -1.9070 0.6476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078279786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = -74.360835 kcal Electronic energy + Delta-G solvation = -26342.863578 eV Core-core repulsion = 22523.596568 eV Total energy + Delta-G solvation = -3819.267010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69124 -40.79770 -39.07542 -37.61015 -35.66529 -34.60132 -33.17534 -32.41612 -30.41440 -29.66664 -28.56774 -27.67710 -26.92600 -25.39812 -23.39220 -22.55808 -21.61774 -20.65216 -19.82990 -18.71217 -18.00676 -17.87929 -17.44744 -16.99939 -16.89460 -16.57743 -16.38957 -15.99518 -15.67442 -15.44853 -15.36563 -14.85752 -14.78333 -14.49085 -14.39746 -14.30510 -13.97880 -13.44013 -13.32203 -13.17795 -13.16473 -13.03272 -12.92622 -12.87608 -12.60376 -12.48364 -12.46141 -12.31435 -11.91953 -11.83916 -11.71572 -11.17392 -11.16955 -10.92206 -10.77145 -10.29047 -10.21220 -10.07619 -10.01186 -8.68088 -8.36397 -6.14392 1.26025 1.29017 1.39863 1.45914 1.55306 1.57264 1.62783 2.15322 2.24891 2.31349 2.97677 3.30830 3.31088 3.45400 3.55835 3.73241 3.79457 3.94095 3.98383 4.03830 4.09532 4.27740 4.41906 4.44200 4.48385 4.49897 4.63133 4.65761 4.77459 4.78177 4.82282 4.88382 4.89109 4.94247 4.99905 5.03942 5.14148 5.18822 5.28820 5.33896 5.39999 5.40296 5.55114 5.56337 5.98530 6.18353 6.51292 6.53553 7.04902 7.23268 7.27052 8.73155 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.001955 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.035951 B =14317.686567 C =15705.423818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.163 4.163 3 C -0.095 4.095 4 C -0.100 4.100 5 C -0.122 4.122 6 C 0.520 3.480 7 O -0.590 6.590 8 N -0.709 5.709 9 C 0.116 3.884 10 C -0.117 4.117 11 C 0.141 3.859 12 H 0.062 0.938 13 C -0.157 4.157 14 N -0.710 5.710 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.131 4.131 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.079 4.079 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.419 0.581 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.414 0.586 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.271 0.729 47 H 0.083 0.917 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.577 -13.000 15.143 36.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C -0.133 4.133 4 C -0.103 4.103 5 C -0.179 4.179 6 C 0.308 3.692 7 O -0.470 6.470 8 N -0.361 5.361 9 C -0.008 4.008 10 C -0.155 4.155 11 C 0.037 3.963 12 H 0.081 0.919 13 C -0.215 4.215 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.116 4.116 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.257 0.743 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.251 0.749 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -29.588 -13.528 12.838 34.975 hybrid contribution 0.334 1.910 1.166 2.263 sum -29.254 -11.618 14.004 34.452 Atomic orbital electron populations 1.23146 0.92987 1.03361 0.99996 1.22724 0.94128 0.97291 1.02175 1.22243 0.93496 0.96486 1.01032 1.22024 0.88928 1.00513 0.98813 1.21606 1.04298 1.03277 0.88756 1.20938 0.87763 0.79447 0.81078 1.90725 1.81056 1.41334 1.33861 1.45829 1.10272 1.37668 1.42342 1.21308 0.81672 0.99862 0.97972 1.21996 0.91500 1.00134 1.01825 1.20991 0.92085 0.83201 1.00067 0.91936 1.22117 0.99528 0.98011 1.01824 1.45907 1.34016 1.24467 1.32007 1.20008 0.80074 0.85775 0.82126 1.90687 1.64443 1.59405 1.29770 1.23387 1.01771 0.98304 1.04772 1.85556 1.37867 1.29336 1.39712 1.23240 1.21216 1.07863 1.17120 0.90005 1.26143 0.95653 1.02538 0.94882 1.70192 1.23636 1.40602 1.20329 0.84897 0.78149 0.76352 0.78492 1.18068 1.19703 1.19998 1.22225 0.92144 0.96158 1.01114 0.87012 0.85877 0.90123 0.90434 0.92172 0.89923 0.89628 0.74287 0.93026 0.93710 0.86745 0.87500 0.95169 0.90386 0.89296 0.74865 0.87830 0.87120 0.91976 0.89881 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 14.71 67.78 1.00 -0.46 16 2 C -0.16 -1.99 6.60 -15.98 -0.11 -2.09 16 3 C -0.10 -1.57 6.98 30.41 0.21 -1.36 16 4 C -0.10 -1.31 1.27 -52.42 -0.07 -1.38 16 5 C -0.12 -0.87 8.98 71.98 0.65 -0.23 16 6 C 0.52 10.40 6.93 87.66 0.61 11.00 16 7 O -0.59 -18.67 15.90 -3.03 -0.05 -18.72 16 8 N -0.71 -9.34 5.44 -463.04 -2.52 -11.86 16 9 C 0.12 1.99 5.56 86.38 0.48 2.47 16 10 C -0.12 -1.17 4.87 30.59 0.15 -1.02 16 11 C 0.14 2.75 2.57 44.99 0.12 2.86 16 12 H 0.06 1.63 7.58 -2.38 -0.02 1.61 16 13 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 14 N -0.71 -17.08 4.53 -442.53 -2.00 -19.09 16 15 C 0.53 19.91 7.81 87.66 0.68 20.59 16 16 O -0.56 -26.49 15.53 -3.04 -0.05 -26.54 16 17 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 18 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 19 C -0.55 -31.95 9.50 67.95 0.65 -31.30 16 20 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.73 5.49 84.86 0.47 1.19 16 22 N -0.91 -56.98 13.22 21.65 0.29 -56.69 16 23 Si 1.00 44.53 29.55 68.60 2.03 46.55 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C -0.08 -0.83 7.18 30.40 0.22 -0.61 16 28 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.12 0.72 8.06 -2.91 -0.02 0.70 16 30 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.08 1.72 7.42 -2.39 -0.02 1.70 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.44 7.70 -2.39 -0.02 0.42 16 34 H 0.08 0.21 7.04 -2.39 -0.02 0.20 16 35 H 0.42 2.09 7.37 -92.71 -0.68 1.40 16 36 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.41 7.17 8.60 -92.71 -0.80 6.37 16 44 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 45 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 47 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 48 H 0.11 0.56 8.10 -2.39 -0.02 0.54 16 Total: -1.00 -87.91 413.43 2.18 -85.73 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.52 Total: 17.71 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 6.17 Total: -7.28 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -4.24 Total: -87.65 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.10 Total: -45.26 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -87.91 2.18 -85.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078279786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.371 kcal (2) G-P(sol) polarization free energy of solvation -87.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds