Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00119 * 179.97438 * 7 6 5 10 10 C 1.53887 * 113.59009 * 279.21950 * 9 7 6 11 11 C 1.53419 * 86.82646 * 220.45415 * 10 9 7 12 12 C 1.52461 * 128.60990 * 165.09663 * 11 10 9 13 13 C 1.52464 * 128.51817 * 245.01468 * 11 10 9 14 14 C 1.53259 * 87.71972 * 25.01246 * 11 10 9 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.08997 * 112.83102 * 50.32874 * 9 7 6 37 37 H 1.09001 * 113.64630 * 334.92207 * 10 9 7 38 38 H 1.08998 * 113.64876 * 105.92311 * 10 9 7 39 39 H 1.08998 * 117.51613 * 224.95753 * 12 11 10 40 40 H 1.09005 * 117.51006 * 10.06396 * 12 11 10 41 41 H 1.09003 * 117.51301 * 349.80304 * 13 11 10 42 42 H 1.08999 * 117.51242 * 134.85992 * 13 11 10 43 43 H 1.08998 * 113.64643 * 220.48630 * 14 11 10 44 44 H 1.09004 * 113.72433 * 89.50120 * 14 11 10 45 45 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 46 46 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 47 47 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 48 48 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.7998 2.0242 9 6 5.8763 -2.0499 4.0060 10 6 5.7545 -1.2141 5.2924 11 6 7.1337 -1.7639 5.6786 12 6 8.0891 -1.2647 6.7568 13 6 7.5001 -2.6754 6.8445 14 6 7.4027 -1.9691 4.1838 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.9995 -0.9271 -8.4604 24 14 3.1831 1.6604 -7.8954 25 1 4.4006 2.4739 -7.6484 26 1 2.7796 1.7929 -9.3185 27 1 2.0819 2.1397 -7.0220 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 5.4787 -3.0601 4.1031 37 1 5.7464 -0.1385 5.1158 38 1 4.9516 -1.5421 5.9525 39 1 9.1429 -1.1745 6.4934 40 1 7.7131 -0.5178 7.4561 41 1 6.7368 -2.8564 7.6013 42 1 8.1660 -3.5134 6.6385 43 1 7.9193 -2.9016 3.9565 44 1 7.8544 -1.1049 3.6968 45 1 2.2491 -1.6319 -1.1524 46 1 3.6539 -1.1197 -3.3923 47 1 1.9842 -1.5494 -3.8349 48 1 4.1478 -0.5816 -9.3546 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078297650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -67.714070 kcal Electronic energy + Delta-G solvation = -26067.399085 eV Core-core repulsion = 22248.420300 eV Total energy + Delta-G solvation = -3818.978785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46860 -40.83222 -39.44669 -37.65994 -35.60960 -34.68925 -34.54591 -33.04833 -30.58616 -29.74572 -27.86568 -26.75227 -26.13801 -23.86107 -23.28607 -22.57786 -21.67179 -21.11933 -19.89684 -19.31347 -18.24758 -17.97193 -17.43170 -17.12113 -16.94839 -16.63907 -16.43289 -16.07772 -16.00536 -15.69292 -15.44446 -15.00752 -14.76541 -14.68563 -14.46483 -14.05013 -13.63691 -13.42511 -13.36738 -13.33686 -13.08638 -13.02931 -13.01806 -12.64306 -12.59758 -12.38976 -12.33605 -12.31304 -11.91003 -11.87011 -11.34378 -11.25887 -11.18859 -10.97255 -10.76302 -10.55617 -10.52320 -10.20875 -10.06061 -9.01152 -8.53133 -6.23952 0.97805 1.30138 1.45305 1.54777 1.57440 1.59466 2.15154 2.22145 2.26928 2.70743 2.84503 2.85029 3.37910 3.54009 3.63752 3.72393 3.80291 3.89519 3.92464 3.98675 4.08237 4.20394 4.23938 4.39718 4.43771 4.44762 4.49573 4.64712 4.74510 4.78077 4.80914 4.82291 4.83586 4.89534 5.00238 5.04055 5.04950 5.14193 5.24147 5.29422 5.33220 5.34374 5.44323 5.54127 5.69041 6.09480 6.47590 6.57139 6.91968 7.21388 7.27927 8.59314 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.001852 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.059404 B =15118.282245 C =16358.536037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.065 0.935 4 C -0.117 4.117 5 C 0.116 3.884 6 N -0.711 5.711 7 C 0.513 3.487 8 O -0.593 6.593 9 C -0.122 4.122 10 C -0.072 4.072 11 C -0.174 4.174 12 C -0.175 4.175 13 C -0.136 4.136 14 C -0.089 4.089 15 N -0.709 5.709 16 C 0.536 3.464 17 O -0.562 6.562 18 C -0.113 4.113 19 S -0.176 6.176 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.915 3.085 25 H -0.264 1.264 26 H -0.257 1.257 27 H -0.237 1.237 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.420 0.580 36 H 0.144 0.856 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.415 0.585 46 H 0.107 0.893 47 H 0.115 0.885 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -6.650 37.138 37.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.009 4.009 6 N -0.363 5.363 7 C 0.301 3.699 8 O -0.473 6.473 9 C -0.142 4.142 10 C -0.109 4.109 11 C -0.175 4.175 12 C -0.212 4.212 13 C -0.172 4.172 14 C -0.127 4.127 15 N -0.363 5.363 16 C 0.321 3.679 17 O -0.440 6.440 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.181 1.181 27 H -0.160 1.160 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.258 0.742 36 H 0.162 0.838 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.252 0.748 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.403 -4.365 36.347 36.687 hybrid contribution 0.657 -1.255 -0.960 1.711 sum -1.746 -5.620 35.387 35.873 Atomic orbital electron populations 1.22119 0.93740 1.03266 1.02387 1.21009 0.95038 0.96833 0.83409 0.91647 1.22002 0.92252 1.03611 0.97652 1.21299 0.95362 0.96520 0.87678 1.45843 1.07312 1.56472 1.26707 1.21151 0.82323 0.79481 0.86960 1.90730 1.56979 1.48069 1.51500 1.22686 0.98007 1.01804 0.91751 1.22377 0.95936 0.98720 0.93902 1.22188 0.97705 1.06618 0.90943 1.22897 0.98638 0.98404 1.01291 1.22894 1.03036 0.93462 0.97834 1.22361 0.94568 1.02221 0.93506 1.45909 1.67337 1.14601 1.08481 1.19899 0.76781 0.86582 0.84617 1.90685 1.50819 1.17379 1.85113 1.23292 1.05860 1.02376 0.94884 1.84684 1.86677 1.18831 1.04749 1.22467 1.50142 0.98239 0.96946 0.92050 1.25570 0.93210 1.02315 0.94893 1.70017 1.44310 1.37743 1.03350 0.85862 0.80958 0.79894 0.79615 1.18879 1.18112 1.16040 0.94934 0.90519 0.89319 0.86734 0.87645 0.93141 0.93708 0.74171 0.83849 0.90669 0.87755 0.89080 0.87955 0.86886 0.88125 0.90645 0.91253 0.74824 0.87447 0.86728 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.51 2.57 45.00 0.12 2.63 16 3 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 4 C -0.12 -1.05 4.87 30.60 0.15 -0.90 16 5 C 0.12 1.87 5.56 86.38 0.48 2.35 16 6 N -0.71 -8.66 5.56 -463.04 -2.57 -11.23 16 7 C 0.51 9.70 7.35 87.66 0.64 10.34 16 8 O -0.59 -18.33 15.90 -3.04 -0.05 -18.37 16 9 C -0.12 -1.41 4.14 -10.94 -0.05 -1.46 16 10 C -0.07 -0.65 7.66 31.03 0.24 -0.42 16 11 C -0.17 -1.91 3.09 -52.31 -0.16 -2.08 16 12 C -0.18 -1.78 10.53 30.46 0.32 -1.46 16 13 C -0.14 -1.01 10.53 30.46 0.32 -0.69 16 14 C -0.09 -1.37 7.42 30.98 0.23 -1.14 16 15 N -0.71 -15.81 4.53 -442.52 -2.00 -17.82 16 16 C 0.54 18.46 7.81 87.66 0.68 19.15 16 17 O -0.56 -24.12 15.52 -3.04 -0.05 -24.17 16 18 C -0.11 -4.37 6.16 71.24 0.44 -3.93 16 19 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 20 C -0.53 -31.58 10.04 67.95 0.68 -30.90 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 22 C 0.05 2.73 5.50 84.86 0.47 3.19 16 23 N -0.92 -56.68 13.97 21.65 0.30 -56.38 16 24 Si 0.91 45.95 27.74 68.60 1.90 47.86 16 25 H -0.26 -13.02 7.11 99.48 0.71 -12.32 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.42 1.57 8.47 -92.71 -0.79 0.78 16 36 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.49 7.44 -2.39 -0.02 1.48 16 45 H 0.41 6.67 8.60 -92.71 -0.80 5.87 16 46 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 47 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 48 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -85.21 411.84 1.07 -84.14 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.66 Total: 13.24 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.25 Total: -7.10 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -4.27 Total: -85.42 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.10 Total: -42.54 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.86 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -85.21 1.07 -84.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078297650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.423 kcal (2) G-P(sol) polarization free energy of solvation -85.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds