Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 108.67949 * 2 1 4 4 C 1.45826 * 108.72381 * 241.81844 * 2 1 3 5 5 S 1.82209 * 112.65357 * 173.89419 * 4 2 1 6 6 C 1.79943 * 103.24663 * 73.95175 * 5 4 2 7 7 C 1.53820 * 111.13962 * 276.00466 * 6 5 4 8 8 N 1.46394 * 114.95342 * 43.04423 * 7 6 5 9 9 C 1.34777 * 119.72634 * 222.50139 * 8 7 6 10 10 O 1.21349 * 120.00150 * 3.72945 * 9 8 7 11 11 C 1.49446 * 120.00048 * 183.73053 * 9 8 7 12 12 O 1.21350 * 120.00045 * 6.14006 * 11 9 8 13 13 N 1.34770 * 120.00292 * 186.14723 * 11 9 8 14 14 C 1.46928 * 120.63587 * 175.35526 * 13 11 9 15 15 C 1.53193 * 108.89309 * 233.68181 * 14 13 11 16 16 C 1.53039 * 109.31161 * 305.28715 * 15 14 13 17 17 C 1.50699 * 109.46326 * 181.38625 * 16 15 14 18 18 H 1.08002 * 119.99428 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00323 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00004 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46942 * 60.00139 * 21 19 17 23 23 H 1.48496 * 109.46994 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46847 * 299.99830 * 21 19 17 25 25 C 1.53045 * 109.53886 * 61.36671 * 16 15 14 26 26 C 1.47209 * 120.81481 * 355.49513 * 13 11 9 27 27 C 1.44678 * 120.54640 * 42.77487 * 8 7 6 28 28 H 1.09005 * 109.47001 * 178.18218 * 1 2 3 29 29 H 1.09000 * 109.47291 * 298.17982 * 1 2 3 30 30 H 1.09004 * 109.47262 * 58.18833 * 1 2 3 31 31 H 1.08998 * 108.84216 * 53.07005 * 4 2 1 32 32 H 1.09002 * 108.75999 * 294.65665 * 4 2 1 33 33 H 1.09002 * 109.14863 * 155.57602 * 6 5 4 34 34 H 1.09000 * 109.09977 * 36.39970 * 6 5 4 35 35 H 1.09004 * 108.39075 * 281.62369 * 7 6 5 36 36 H 1.09006 * 108.38944 * 164.46691 * 7 6 5 37 37 H 1.08993 * 109.59307 * 113.81879 * 14 13 11 38 38 H 1.08998 * 109.58424 * 353.53470 * 14 13 11 39 39 H 1.08994 * 109.49981 * 65.23832 * 15 14 13 40 40 H 1.09004 * 109.49948 * 185.30950 * 15 14 13 41 41 H 1.09002 * 109.46377 * 301.36167 * 16 15 14 42 42 H 0.97007 * 119.99644 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.49468 * 58.58426 * 25 16 15 44 44 H 1.08996 * 109.50014 * 178.68300 * 25 16 15 45 45 H 1.09002 * 109.53363 * 6.53946 * 26 13 11 46 46 H 1.09002 * 109.68102 * 246.23187 * 26 13 11 47 47 H 1.08996 * 109.47839 * 21.23905 * 27 8 7 48 48 H 1.08997 * 109.47367 * 141.25953 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8791 1.0326 0.0000 4 6 1.9981 -0.6522 -1.2174 5 16 3.8068 -0.5550 -1.4146 6 6 4.4179 -1.7357 -0.2020 7 6 4.5166 -1.0967 1.1937 8 7 3.3769 -0.2591 1.5715 9 6 3.5896 0.9194 2.1898 10 8 4.7228 1.3141 2.3705 11 6 2.4297 1.7403 2.6529 12 8 1.3028 1.2973 2.5736 13 7 2.6353 2.9726 3.1583 14 6 1.5002 3.8311 3.5233 15 6 1.6511 5.1808 2.8146 16 6 3.0199 5.7779 3.1493 17 6 3.1585 7.1216 2.4813 18 1 2.3511 7.5109 1.8788 19 6 4.3160 7.8540 2.6392 20 7 5.2993 7.3796 3.3724 21 14 4.4874 9.5199 1.8117 22 1 3.4189 10.4279 2.3008 23 1 5.8160 10.0989 2.1351 24 1 4.3638 9.3570 0.3408 25 6 4.1227 4.8429 2.6474 26 6 3.9998 3.4893 3.3541 27 6 2.0240 -0.6888 1.2919 28 1 -0.3633 -1.0272 -0.0326 29 1 -0.3634 0.4853 0.9058 30 1 -0.3634 0.5417 -0.8733 31 1 1.5241 -0.1768 -2.0760 32 1 1.7028 -1.7011 -1.1889 33 1 5.4052 -2.0828 -0.5069 34 1 3.7378 -2.5864 -0.1583 35 1 5.4188 -0.4860 1.2293 36 1 4.6169 -1.8937 1.9305 37 1 1.4898 3.9841 4.6024 38 1 0.5691 3.3573 3.2125 39 1 1.5705 5.0371 1.7372 40 1 0.8662 5.8582 3.1511 41 1 3.1096 5.8982 4.2289 42 1 6.1138 7.8947 3.4832 43 1 4.0188 4.7024 1.5715 44 1 5.0972 5.2799 2.8652 45 1 4.7191 2.7890 2.9297 46 1 4.1958 3.6140 4.4191 47 1 2.0067 -1.7702 1.1566 48 1 1.3767 -0.4163 2.1254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117908939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -42.552531 kcal Electronic energy + Delta-G solvation = -29422.896442 eV Core-core repulsion = 25605.008744 eV Total energy + Delta-G solvation = -3817.887698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04942 -38.75735 -37.79299 -36.66810 -34.88183 -33.44984 -31.47527 -31.19887 -30.02254 -27.52903 -26.89134 -26.47103 -25.11510 -23.11662 -22.37345 -21.59645 -20.81987 -19.68395 -18.63929 -17.30166 -17.00780 -16.67149 -16.45694 -15.93790 -15.82196 -15.29730 -14.96819 -14.58771 -14.51596 -14.18598 -13.94485 -13.62635 -13.29696 -13.15283 -12.91290 -12.88492 -12.77543 -12.70102 -12.30978 -12.17419 -11.92489 -11.65097 -11.57192 -11.36425 -11.26348 -10.93823 -10.89729 -10.71193 -10.44815 -10.29019 -10.03751 -9.94657 -9.56483 -9.18044 -9.14032 -8.89309 -8.44154 -8.25195 -8.07481 -7.87916 -5.97873 -4.04515 1.45530 1.60821 2.25995 2.46183 3.32868 3.37811 3.39883 3.41014 3.60740 4.26034 4.42630 4.44571 4.47815 4.60621 4.66493 4.93675 5.11756 5.17323 5.21948 5.24964 5.31831 5.48297 5.48877 5.53425 5.63706 5.76072 5.82928 5.87167 5.99482 6.04840 6.11442 6.18117 6.25911 6.29798 6.48133 6.62839 6.75376 6.79850 6.97546 7.08042 7.20086 7.32319 7.69303 7.80478 7.90815 7.98663 8.10944 8.26719 8.44866 8.98333 9.60235 11.07445 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.003276 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.055007 B = 8543.844346 C = 8832.251786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 H 0.080 0.920 4 C -0.072 4.072 5 S -0.246 6.246 6 C -0.102 4.102 7 C 0.106 3.894 8 N -0.576 5.576 9 C 0.514 3.486 10 O -0.499 6.499 11 C 0.503 3.497 12 O -0.537 6.537 13 N -0.557 5.557 14 C 0.107 3.893 15 C -0.122 4.122 16 C 0.046 3.954 17 C -0.514 4.514 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.118 4.118 26 C 0.042 3.958 27 C 0.089 3.911 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.261 0.739 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.143 0.857 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -20.961 -4.859 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.220 4.220 5 S -0.017 6.017 6 C -0.251 4.251 7 C -0.019 4.019 8 N -0.308 5.308 9 C 0.299 3.701 10 O -0.375 6.375 11 C 0.285 3.715 12 O -0.418 6.418 13 N -0.287 5.287 14 C -0.014 4.014 15 C -0.160 4.160 16 C 0.028 3.972 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.157 4.157 26 C -0.078 4.078 27 C -0.034 4.034 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.122 0.878 45 H 0.159 0.841 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.806 -20.295 -5.452 21.557 hybrid contribution -0.480 0.256 0.248 0.598 sum -5.286 -20.040 -5.203 21.368 Atomic orbital electron populations 1.21822 0.93353 1.01531 1.03171 1.20655 0.97273 1.01399 0.93422 0.90165 1.22351 0.93340 1.04132 1.02133 1.86921 1.06601 1.58640 1.49523 1.23737 1.05802 0.99634 0.95974 1.21649 0.90740 0.95116 0.94410 1.47219 1.07561 1.19087 1.56935 1.20418 0.89785 0.81400 0.78493 1.90348 1.24618 1.67165 1.55348 1.19716 0.88572 0.83135 0.80061 1.90513 1.24038 1.69740 1.57502 1.48329 1.10267 1.12645 1.57467 1.21878 0.88351 0.91687 0.99518 1.22008 1.01304 0.93335 0.99363 1.18681 0.88515 0.93311 0.96737 1.21148 1.01026 1.02241 1.30820 0.92835 1.24953 0.95915 0.97837 0.95173 1.69838 1.05849 1.37877 1.39279 0.86690 0.77149 0.84358 0.79983 1.20352 1.21299 1.20347 1.21953 1.04737 0.91528 0.97466 1.23610 0.81708 1.00862 1.01622 1.22466 0.82853 0.98088 0.99998 0.92992 0.90574 0.92714 0.87696 0.90241 0.86393 0.89669 0.88238 0.90982 0.91612 0.90150 0.92931 0.91932 0.95524 0.92919 0.94543 0.87754 0.84113 0.92302 0.91479 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.91 37.16 0.33 -0.97 16 2 C -0.11 -1.14 1.71 -93.22 -0.16 -1.30 16 3 H 0.08 1.14 7.41 -51.93 -0.38 0.75 16 4 C -0.07 -0.67 5.00 33.76 0.17 -0.50 16 5 S -0.25 -2.77 21.62 -107.50 -2.32 -5.09 16 6 C -0.10 -0.84 5.90 37.58 0.22 -0.62 16 7 C 0.11 1.06 6.01 -3.67 -0.02 1.04 16 8 N -0.58 -7.10 2.39 -174.25 -0.42 -7.52 16 9 C 0.51 8.12 7.34 -11.59 -0.09 8.04 16 10 O -0.50 -8.89 12.35 5.50 0.07 -8.83 16 11 C 0.50 8.47 7.27 -11.59 -0.08 8.39 16 12 O -0.54 -8.68 11.02 5.50 0.06 -8.62 16 13 N -0.56 -10.22 2.98 -173.05 -0.52 -10.73 16 14 C 0.11 1.90 6.41 -3.71 -0.02 1.88 16 15 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 16 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 17 C -0.51 -13.95 8.56 -34.44 -0.29 -14.24 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -25.06 11.30 55.43 0.63 -24.44 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.12 -2.79 5.15 -26.61 -0.14 -2.92 16 26 C 0.04 0.84 6.28 -3.56 -0.02 0.81 16 27 C 0.09 0.94 4.33 -4.22 -0.02 0.92 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.84 7.11 -51.93 -0.37 0.47 16 30 H 0.05 0.49 8.11 -51.93 -0.42 0.07 16 31 H 0.10 0.94 8.04 -51.92 -0.42 0.52 16 32 H 0.08 0.60 8.11 -51.92 -0.42 0.17 16 33 H 0.12 0.80 8.14 -51.80 -0.42 0.38 16 34 H 0.08 0.56 7.91 -51.79 -0.41 0.15 16 35 H 0.10 1.17 6.93 -51.93 -0.36 0.81 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.33 7.03 -51.93 -0.37 0.96 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 2.75 6.03 -51.93 -0.31 2.43 16 45 H 0.14 2.84 3.74 -57.05 -0.21 2.62 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 48 H 0.13 1.62 4.90 -52.25 -0.26 1.36 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -29.19 370.24 -10.16 -39.35 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.67 Total: 3.62 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.55 Total: 0.45 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.31 Total: -42.69 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.13 Total: -17.45 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.32 Total: -5.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.19 -10.16 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117908939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.206 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds