Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 108.67949 * 2 1 4 4 C 1.45826 * 108.72381 * 241.81844 * 2 1 3 5 5 S 1.82209 * 112.65357 * 173.89419 * 4 2 1 6 6 C 1.79943 * 103.24663 * 73.95175 * 5 4 2 7 7 C 1.53820 * 111.13962 * 276.00466 * 6 5 4 8 8 N 1.46394 * 114.95342 * 43.04423 * 7 6 5 9 9 C 1.34777 * 119.72634 * 222.50139 * 8 7 6 10 10 O 1.21349 * 120.00150 * 3.72945 * 9 8 7 11 11 C 1.49446 * 120.00048 * 183.73053 * 9 8 7 12 12 O 1.21350 * 120.00045 * 6.14006 * 11 9 8 13 13 N 1.34770 * 120.00292 * 186.14723 * 11 9 8 14 14 C 1.46928 * 120.63587 * 175.35526 * 13 11 9 15 15 C 1.53193 * 108.89309 * 233.68181 * 14 13 11 16 16 C 1.53039 * 109.31161 * 305.28715 * 15 14 13 17 17 C 1.50699 * 109.46326 * 181.38625 * 16 15 14 18 18 H 1.08002 * 119.99428 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00323 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00004 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46942 * 60.00139 * 21 19 17 23 23 H 1.48496 * 109.46994 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46847 * 299.99830 * 21 19 17 25 25 C 1.53045 * 109.53886 * 61.36671 * 16 15 14 26 26 C 1.47209 * 120.81481 * 355.49513 * 13 11 9 27 27 C 1.44678 * 120.54640 * 42.77487 * 8 7 6 28 28 H 1.09005 * 109.47001 * 178.18218 * 1 2 3 29 29 H 1.09000 * 109.47291 * 298.17982 * 1 2 3 30 30 H 1.09004 * 109.47262 * 58.18833 * 1 2 3 31 31 H 1.08998 * 108.84216 * 53.07005 * 4 2 1 32 32 H 1.09002 * 108.75999 * 294.65665 * 4 2 1 33 33 H 1.09002 * 109.14863 * 155.57602 * 6 5 4 34 34 H 1.09000 * 109.09977 * 36.39970 * 6 5 4 35 35 H 1.09004 * 108.39075 * 281.62369 * 7 6 5 36 36 H 1.09006 * 108.38944 * 164.46691 * 7 6 5 37 37 H 1.08993 * 109.59307 * 113.81879 * 14 13 11 38 38 H 1.08998 * 109.58424 * 353.53470 * 14 13 11 39 39 H 1.08994 * 109.49981 * 65.23832 * 15 14 13 40 40 H 1.09004 * 109.49948 * 185.30950 * 15 14 13 41 41 H 1.09002 * 109.46377 * 301.36167 * 16 15 14 42 42 H 0.97007 * 119.99644 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.49468 * 58.58426 * 25 16 15 44 44 H 1.08996 * 109.50014 * 178.68300 * 25 16 15 45 45 H 1.09002 * 109.53363 * 6.53946 * 26 13 11 46 46 H 1.09002 * 109.68102 * 246.23187 * 26 13 11 47 47 H 1.08996 * 109.47839 * 21.23905 * 27 8 7 48 48 H 1.08997 * 109.47367 * 141.25953 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8791 1.0326 0.0000 4 6 1.9981 -0.6522 -1.2174 5 16 3.8068 -0.5550 -1.4146 6 6 4.4179 -1.7357 -0.2020 7 6 4.5166 -1.0967 1.1937 8 7 3.3769 -0.2591 1.5715 9 6 3.5896 0.9194 2.1898 10 8 4.7228 1.3141 2.3705 11 6 2.4297 1.7403 2.6529 12 8 1.3028 1.2973 2.5736 13 7 2.6353 2.9726 3.1583 14 6 1.5002 3.8311 3.5233 15 6 1.6511 5.1808 2.8146 16 6 3.0199 5.7779 3.1493 17 6 3.1585 7.1216 2.4813 18 1 2.3511 7.5109 1.8788 19 6 4.3160 7.8540 2.6392 20 7 5.2993 7.3796 3.3724 21 14 4.4874 9.5199 1.8117 22 1 3.4189 10.4279 2.3008 23 1 5.8160 10.0989 2.1351 24 1 4.3638 9.3570 0.3408 25 6 4.1227 4.8429 2.6474 26 6 3.9998 3.4893 3.3541 27 6 2.0240 -0.6888 1.2919 28 1 -0.3633 -1.0272 -0.0326 29 1 -0.3634 0.4853 0.9058 30 1 -0.3634 0.5417 -0.8733 31 1 1.5241 -0.1768 -2.0760 32 1 1.7028 -1.7011 -1.1889 33 1 5.4052 -2.0828 -0.5069 34 1 3.7378 -2.5864 -0.1583 35 1 5.4188 -0.4860 1.2293 36 1 4.6169 -1.8937 1.9305 37 1 1.4898 3.9841 4.6024 38 1 0.5691 3.3573 3.2125 39 1 1.5705 5.0371 1.7372 40 1 0.8662 5.8582 3.1511 41 1 3.1096 5.8982 4.2289 42 1 6.1138 7.8947 3.4832 43 1 4.0188 4.7024 1.5715 44 1 5.0972 5.2799 2.8652 45 1 4.7191 2.7890 2.9297 46 1 4.1958 3.6140 4.4191 47 1 2.0067 -1.7702 1.1566 48 1 1.3767 -0.4163 2.1254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117908939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -58.509762 kcal Electronic energy + Delta-G solvation = -29423.588400 eV Core-core repulsion = 25605.008744 eV Total energy + Delta-G solvation = -3818.579656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29066 -40.07322 -39.00683 -38.07667 -35.82986 -35.24816 -33.02312 -32.31965 -31.72546 -28.52387 -28.20254 -27.51779 -26.52745 -24.56692 -24.05163 -22.80527 -21.90323 -21.01209 -20.13583 -18.54001 -18.34441 -18.17154 -17.61425 -17.34516 -16.95277 -16.53469 -16.41896 -15.91868 -15.52380 -15.46190 -15.11698 -14.84717 -14.63386 -14.51521 -14.45993 -14.21339 -13.90985 -13.75526 -13.54402 -13.37310 -13.18788 -13.04852 -12.79451 -12.74070 -12.51937 -12.34448 -12.16214 -12.09159 -12.02334 -11.83816 -11.75069 -11.36327 -11.02264 -10.89035 -10.66959 -10.44391 -10.00145 -9.75774 -9.60622 -8.74411 -8.07563 -6.21855 0.31508 0.71473 1.22903 1.41315 1.42519 1.49879 1.61603 2.11067 2.37836 2.43522 3.07526 3.18755 3.57281 3.67034 3.84228 3.99666 4.10498 4.17510 4.28489 4.32622 4.35361 4.43921 4.49181 4.52843 4.56087 4.57902 4.66588 4.73650 4.77654 4.78897 4.89657 4.95375 4.97270 5.09246 5.17724 5.19080 5.25659 5.35688 5.42472 5.47476 5.58863 5.63759 5.90061 5.96486 6.10685 6.29997 6.37709 6.67066 6.88294 6.92902 7.45914 8.95789 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.003276 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.055007 B = 8543.844346 C = 8832.251786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.038 0.962 4 C -0.058 4.058 5 S -0.317 6.317 6 C -0.082 4.082 7 C 0.100 3.900 8 N -0.563 5.563 9 C 0.508 3.492 10 O -0.527 6.527 11 C 0.503 3.497 12 O -0.527 6.527 13 N -0.569 5.569 14 C 0.114 3.886 15 C -0.112 4.112 16 C 0.043 3.957 17 C -0.537 4.537 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.914 5.914 21 Si 0.951 3.049 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.276 1.276 25 C -0.107 4.107 26 C 0.058 3.942 27 C 0.086 3.914 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.003 0.997 42 H 0.261 0.739 43 H 0.018 0.982 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.057 0.943 47 H 0.105 0.895 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -23.573 -5.469 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 H 0.057 0.943 4 C -0.205 4.205 5 S -0.088 6.088 6 C -0.231 4.231 7 C -0.024 4.024 8 N -0.293 5.293 9 C 0.292 3.708 10 O -0.406 6.406 11 C 0.286 3.714 12 O -0.406 6.406 13 N -0.300 5.300 14 C -0.007 4.007 15 C -0.151 4.151 16 C 0.025 3.975 17 C -0.575 4.575 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.553 5.553 21 Si 0.776 3.224 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.201 1.201 25 C -0.146 4.146 26 C -0.063 4.063 27 C -0.036 4.036 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.021 0.979 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.091 0.909 45 H 0.163 0.837 46 H 0.075 0.925 47 H 0.123 0.877 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.200 -22.956 -6.085 24.545 hybrid contribution -0.106 0.980 0.405 1.066 sum -6.306 -21.976 -5.680 23.558 Atomic orbital electron populations 1.21766 0.92113 1.03101 1.02300 1.20575 0.98181 0.99158 0.94209 0.94324 1.22310 0.91148 1.05773 1.01294 1.87252 1.09445 1.60689 1.51452 1.23770 1.07344 0.98819 0.93175 1.21892 0.88817 0.95146 0.96539 1.47300 1.09163 1.17829 1.55022 1.20243 0.88873 0.82396 0.79274 1.90307 1.25211 1.68054 1.57067 1.19980 0.89258 0.82771 0.79381 1.90531 1.23925 1.69506 1.56652 1.48271 1.09406 1.13538 1.58798 1.21812 0.88907 0.90227 0.99782 1.21845 0.99122 0.95041 0.99044 1.18646 0.91056 0.92927 0.94892 1.21539 1.01134 1.03726 1.31063 0.93135 1.25699 0.95678 1.01219 0.95789 1.69977 1.06122 1.38995 1.40204 0.85730 0.77293 0.80392 0.78939 1.19510 1.20902 1.20108 1.21702 1.02881 0.93430 0.96548 1.23315 0.83197 0.98862 1.00907 1.22571 0.81471 1.00235 0.99329 0.90233 0.92449 0.92540 0.87576 0.87201 0.84719 0.86705 0.90430 0.87881 0.90612 0.88369 0.93916 0.90960 0.97909 0.92997 0.96356 0.90857 0.83748 0.92498 0.87681 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.91 71.98 0.64 -1.52 16 2 C -0.10 -1.93 1.71 -12.48 -0.02 -1.96 16 3 H 0.04 1.08 7.41 -2.39 -0.02 1.07 16 4 C -0.06 -0.93 5.00 69.78 0.35 -0.58 16 5 S -0.32 -6.67 21.62 -56.49 -1.22 -7.90 16 6 C -0.08 -1.08 5.90 72.26 0.43 -0.66 16 7 C 0.10 1.75 6.01 86.68 0.52 2.27 16 8 N -0.56 -12.86 2.39 -823.55 -1.97 -14.83 16 9 C 0.51 15.89 7.34 87.27 0.64 16.53 16 10 O -0.53 -19.13 12.35 -3.24 -0.04 -19.17 16 11 C 0.50 16.77 7.27 87.27 0.63 17.41 16 12 O -0.53 -16.40 11.02 -3.25 -0.04 -16.43 16 13 N -0.57 -21.01 2.98 -819.77 -2.45 -23.46 16 14 C 0.11 4.00 6.41 86.36 0.55 4.56 16 15 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 16 C 0.04 2.18 2.06 -11.51 -0.02 2.16 16 17 C -0.54 -29.93 8.56 25.60 0.22 -29.71 16 18 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 19 C 0.02 0.84 5.30 84.65 0.45 1.29 16 20 N -0.91 -53.10 11.30 21.45 0.24 -52.86 16 21 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 C -0.11 -5.28 5.15 30.67 0.16 -5.12 16 26 C 0.06 2.40 6.28 86.31 0.54 2.94 16 27 C 0.09 1.57 4.33 87.24 0.38 1.95 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 1.17 7.11 -2.39 -0.02 1.15 16 30 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 31 H 0.11 1.69 8.04 -2.39 -0.02 1.67 16 32 H 0.11 1.13 8.11 -2.39 -0.02 1.11 16 33 H 0.13 1.38 8.14 -2.47 -0.02 1.36 16 34 H 0.11 0.88 7.91 -2.48 -0.02 0.86 16 35 H 0.08 1.76 6.93 -2.38 -0.02 1.74 16 36 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.10 3.10 7.03 -2.39 -0.02 3.09 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 4.08 6.03 -2.39 -0.01 4.06 16 45 H 0.15 6.04 3.74 -83.49 -0.31 5.73 16 46 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.11 1.19 7.52 -2.39 -0.02 1.17 16 48 H 0.12 2.61 4.90 -7.40 -0.04 2.57 16 Total: -1.00 -66.26 370.24 2.81 -63.45 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.63 Total: 19.86 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.63 Total: 5.08 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -4.17 Total: -91.15 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.08 Total: -35.60 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -1.22 Total: -7.90 kcal Total: -66.26 2.81 -63.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117908939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.936 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds