Wall clock time and date at job start Sat Apr 11 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 108.57567 * 2 1 4 4 C 1.45821 * 108.71747 * 118.12903 * 2 1 3 5 5 S 1.82223 * 112.65128 * 186.11270 * 4 2 1 6 6 C 1.79946 * 103.24065 * 286.05120 * 5 4 2 7 7 C 1.54178 * 111.28811 * 83.91254 * 6 5 4 8 8 N 1.46390 * 114.74493 * 317.22983 * 7 6 5 9 9 C 1.34774 * 119.73082 * 137.37525 * 8 7 6 10 10 O 1.21355 * 119.99349 * 5.00479 * 9 8 7 11 11 C 1.49447 * 120.00317 * 185.00290 * 9 8 7 12 12 O 1.21346 * 120.00180 * 353.50529 * 11 9 8 13 13 N 1.34786 * 119.99836 * 173.49695 * 11 9 8 14 14 C 1.46924 * 120.62990 * 353.13387 * 13 11 9 15 15 C 1.53186 * 108.77564 * 126.38710 * 14 13 11 16 16 C 1.53048 * 109.31169 * 54.63227 * 15 14 13 17 17 C 1.53037 * 109.53895 * 298.63637 * 16 15 14 18 18 H 1.08998 * 109.49893 * 301.38116 * 17 16 15 19 19 C 1.50698 * 109.49747 * 181.31448 * 17 16 15 20 20 H 1.08001 * 120.00034 * 0.07046 * 19 17 16 21 21 C 1.37872 * 119.99955 * 179.78485 * 19 17 16 22 22 N 1.31520 * 120.00217 * 0.27919 * 21 19 17 23 23 Si 1.86799 * 120.00009 * 180.27479 * 21 19 17 24 24 H 1.48507 * 109.47175 * 60.00752 * 23 21 19 25 25 H 1.48508 * 109.47353 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47460 * 300.00352 * 23 21 19 27 27 C 1.46931 * 120.60028 * 173.10976 * 13 11 9 28 28 C 1.44681 * 120.54499 * 317.10426 * 8 7 6 29 29 H 1.09003 * 109.47273 * 178.12143 * 1 2 3 30 30 H 1.08997 * 109.47033 * 298.11822 * 1 2 3 31 31 H 1.08999 * 109.47379 * 58.12093 * 1 2 3 32 32 H 1.09003 * 108.84297 * 306.92580 * 4 2 1 33 33 H 1.08997 * 108.84832 * 65.39847 * 4 2 1 34 34 H 1.09001 * 109.14532 * 204.41558 * 6 5 4 35 35 H 1.08999 * 109.14983 * 323.56114 * 6 5 4 36 36 H 1.08990 * 108.58902 * 195.80181 * 7 6 5 37 37 H 1.09000 * 108.40171 * 78.51981 * 7 6 5 38 38 H 1.09001 * 109.59148 * 6.59991 * 14 13 11 39 39 H 1.09006 * 109.70249 * 246.24417 * 14 13 11 40 40 H 1.08998 * 109.50217 * 294.68422 * 15 14 13 41 41 H 1.08999 * 109.50232 * 174.58329 * 15 14 13 42 42 H 1.09004 * 109.45976 * 178.61451 * 16 15 14 43 43 H 1.08999 * 109.45842 * 58.65824 * 16 15 14 44 44 H 0.96997 * 119.99912 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.55901 * 113.81119 * 27 13 11 46 46 H 1.08992 * 109.61906 * 353.37671 * 27 13 11 47 47 H 1.09002 * 109.47427 * 218.74453 * 28 8 7 48 48 H 1.09000 * 109.47905 * 338.76130 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 1.9979 -0.6511 1.2180 5 16 3.8068 -0.5536 1.4153 6 6 4.4179 -1.7353 0.2037 7 6 4.5164 -1.1000 -1.1976 8 7 3.3768 -0.2604 -1.5712 9 6 3.5892 0.9177 -2.1904 10 8 4.7133 1.2371 -2.5176 11 6 2.4405 1.8306 -2.4741 12 8 1.3049 1.4630 -2.2552 13 7 2.6658 3.0623 -2.9729 14 6 4.0353 3.5784 -3.1026 15 6 4.2541 4.0383 -4.5474 16 6 3.1648 5.0433 -4.9291 17 6 1.7933 4.3704 -4.8389 18 1 1.7672 3.5071 -5.5037 19 6 0.7240 5.3513 -5.2460 20 1 0.9953 6.3542 -5.5409 21 6 -0.5999 4.9665 -5.2476 22 7 -0.9302 3.7451 -4.8885 23 14 -1.9246 6.1800 -5.7595 24 1 -1.6780 6.6222 -7.1556 25 1 -3.2550 5.5254 -5.6749 26 1 -1.8942 7.3570 -4.8547 27 6 1.5461 3.9136 -3.3977 28 6 2.0242 -0.6874 -1.2863 29 1 -0.3634 -1.0271 -0.0337 30 1 -0.3633 0.4843 0.9064 31 1 -0.3634 0.5427 -0.8726 32 1 1.5239 -0.1748 2.0762 33 1 1.7042 -1.7004 1.1914 34 1 5.4053 -2.0820 0.5089 35 1 3.7388 -2.5868 0.1605 36 1 4.6121 -1.8972 -1.9346 37 1 5.4196 -0.4910 -1.2367 38 1 4.7476 2.7903 -2.8582 39 1 4.1761 4.4210 -2.4256 40 1 4.2050 3.1778 -5.2146 41 1 5.2322 4.5114 -4.6344 42 1 3.3325 5.3908 -5.9486 43 1 3.1985 5.8922 -4.2462 44 1 -1.8617 3.4746 -4.8893 45 1 1.4812 4.7839 -2.7445 46 1 0.6164 3.3469 -3.3484 47 1 1.3741 -0.4139 -2.1174 48 1 2.0054 -1.7688 -1.1508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118456511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:35 Heat of formation + Delta-G solvation = -46.378127 kcal Electronic energy + Delta-G solvation = -29668.181230 eV Core-core repulsion = 25850.127641 eV Total energy + Delta-G solvation = -3818.053589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89177 -38.55616 -37.68319 -36.50818 -34.77743 -33.25819 -31.77571 -31.33941 -29.74054 -27.38300 -26.61085 -26.09437 -24.99861 -23.88255 -21.85953 -21.62639 -20.73893 -19.45145 -18.59297 -17.21613 -17.00595 -16.57527 -16.32236 -15.72314 -15.61375 -15.17008 -14.88297 -14.56384 -14.43715 -13.95454 -13.77866 -13.64459 -13.42744 -13.21856 -12.89046 -12.72033 -12.67226 -12.58207 -12.16666 -11.88685 -11.78921 -11.77258 -11.42766 -11.35384 -11.12744 -10.97118 -10.71519 -10.68363 -10.46201 -10.25071 -10.00376 -9.92239 -9.72294 -9.16743 -9.11678 -8.83741 -8.48182 -8.36087 -7.87522 -7.79791 -6.03732 -4.11349 1.49509 1.77804 2.31396 2.63146 3.30360 3.35778 3.37797 3.62232 3.82393 4.33775 4.40678 4.54397 4.63662 4.65384 4.75852 5.04735 5.18363 5.26974 5.28402 5.30757 5.36253 5.53906 5.62660 5.66914 5.69919 5.70795 5.88837 5.94782 6.03566 6.19972 6.26873 6.36438 6.40702 6.46937 6.61317 6.63932 6.74692 6.88881 6.99402 7.05265 7.16257 7.20651 7.58055 7.81693 7.93859 7.96298 8.17193 8.34868 8.60067 8.92297 9.54075 11.01893 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.003655 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.827894 B = 7658.258285 C = 8882.186151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.070 4.070 5 S -0.254 6.254 6 C -0.101 4.101 7 C 0.108 3.892 8 N -0.577 5.577 9 C 0.515 3.485 10 O -0.513 6.513 11 C 0.496 3.504 12 O -0.515 6.515 13 N -0.566 5.566 14 C 0.049 3.951 15 C -0.127 4.127 16 C -0.113 4.113 17 C 0.041 3.959 18 H 0.029 0.971 19 C -0.519 4.519 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.883 5.883 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.111 3.889 28 C 0.103 3.897 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.264 0.736 45 H 0.047 0.953 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -12.215 10.867 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.101 0.899 4 C -0.217 4.217 5 S -0.025 6.025 6 C -0.251 4.251 7 C -0.017 4.017 8 N -0.309 5.309 9 C 0.300 3.700 10 O -0.390 6.390 11 C 0.278 3.722 12 O -0.392 6.392 13 N -0.297 5.297 14 C -0.072 4.072 15 C -0.165 4.165 16 C -0.151 4.151 17 C 0.022 3.978 18 H 0.047 0.953 19 C -0.558 4.558 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.521 5.521 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.009 4.009 28 C -0.020 4.020 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.159 0.841 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.913 -11.739 11.559 18.731 hybrid contribution -1.428 -0.071 -1.040 1.768 sum 7.485 -11.810 10.519 17.497 Atomic orbital electron populations 1.21821 0.93118 1.01524 1.03375 1.20508 0.97558 1.01430 0.92834 0.89912 1.22402 0.92734 1.04238 1.02369 1.86744 1.07276 1.58778 1.49671 1.23793 1.05696 0.99674 0.95892 1.21687 0.90528 0.95219 0.94288 1.47262 1.07569 1.19179 1.56857 1.20818 0.89716 0.81874 0.77582 1.90284 1.25301 1.72028 1.51430 1.19642 0.88514 0.83402 0.80663 1.90660 1.22838 1.73843 1.51907 1.48436 1.09754 1.13735 1.57771 1.23068 0.84714 1.02195 0.97249 1.21853 0.98766 0.99722 0.96191 1.21668 0.96171 0.97288 0.99972 1.18965 0.90963 0.95957 0.91918 0.95306 1.21065 0.90965 0.98252 1.45484 0.92343 1.25033 0.98752 0.95199 0.94934 1.69859 1.18080 1.17024 1.47115 0.86642 0.80853 0.81258 0.79163 1.20276 1.21252 1.20227 1.22469 0.89101 0.92594 0.96746 1.22068 0.82346 0.97789 0.99766 0.93243 0.92981 0.89848 0.87747 0.90263 0.86502 0.89615 0.90994 0.88573 0.84065 0.92747 0.92400 0.92317 0.93134 0.93267 0.92638 0.93511 0.85825 0.86046 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.83 37.16 0.33 -1.31 16 2 C -0.10 -1.24 1.52 -93.50 -0.14 -1.38 16 3 H 0.08 1.27 6.79 -51.93 -0.35 0.92 16 4 C -0.07 -0.70 5.00 33.76 0.17 -0.53 16 5 S -0.25 -2.82 21.63 -107.50 -2.33 -5.15 16 6 C -0.10 -0.85 5.90 37.77 0.22 -0.63 16 7 C 0.11 1.12 6.00 -3.49 -0.02 1.10 16 8 N -0.58 -7.70 2.40 -174.36 -0.42 -8.12 16 9 C 0.51 8.59 7.38 -11.59 -0.09 8.50 16 10 O -0.51 -8.95 12.47 5.49 0.07 -8.88 16 11 C 0.50 9.63 7.12 -11.58 -0.08 9.55 16 12 O -0.51 -10.43 10.01 5.50 0.06 -10.37 16 13 N -0.57 -11.61 2.97 -173.27 -0.52 -12.12 16 14 C 0.05 0.89 6.27 -3.71 -0.02 0.87 16 15 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 16 C -0.11 -2.34 5.11 -26.69 -0.14 -2.48 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 22 N -0.88 -24.84 11.40 55.43 0.63 -24.21 16 23 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.11 2.63 5.39 -3.71 -0.02 2.61 16 28 C 0.10 1.28 4.30 -4.50 -0.02 1.26 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.57 8.04 -51.93 -0.42 0.15 16 31 H 0.08 1.24 6.80 -51.93 -0.35 0.89 16 32 H 0.10 1.00 7.99 -51.92 -0.41 0.58 16 33 H 0.08 0.66 8.11 -51.92 -0.42 0.24 16 34 H 0.12 0.78 8.14 -51.80 -0.42 0.36 16 35 H 0.09 0.60 7.91 -51.80 -0.41 0.19 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.11 7.01 -51.93 -0.36 0.75 16 38 H 0.14 2.51 3.78 -56.77 -0.21 2.30 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.12 3.31 5.18 -51.93 -0.27 3.04 16 47 H 0.12 1.81 5.54 -51.93 -0.29 1.53 16 48 H 0.07 0.65 7.52 -51.93 -0.39 0.26 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -28.90 368.90 -10.19 -39.09 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.66 Total: 4.98 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -0.57 Total: 3.31 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.30 Total: -44.45 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.12 Total: -19.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.33 Total: -5.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.90 -10.19 -39.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118456511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.288 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds