Wall clock time and date at job start Sat Apr 11 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 108.57567 * 2 1 4 4 C 1.45821 * 108.71747 * 118.12903 * 2 1 3 5 5 S 1.82223 * 112.65128 * 186.11270 * 4 2 1 6 6 C 1.79946 * 103.24065 * 286.05120 * 5 4 2 7 7 C 1.54178 * 111.28811 * 83.91254 * 6 5 4 8 8 N 1.46390 * 114.74493 * 317.22983 * 7 6 5 9 9 C 1.34774 * 119.73082 * 137.37525 * 8 7 6 10 10 O 1.21355 * 119.99349 * 5.00479 * 9 8 7 11 11 C 1.49447 * 120.00317 * 185.00290 * 9 8 7 12 12 O 1.21346 * 120.00180 * 353.50529 * 11 9 8 13 13 N 1.34786 * 119.99836 * 173.49695 * 11 9 8 14 14 C 1.46924 * 120.62990 * 353.13387 * 13 11 9 15 15 C 1.53186 * 108.77564 * 126.38710 * 14 13 11 16 16 C 1.53048 * 109.31169 * 54.63227 * 15 14 13 17 17 C 1.53037 * 109.53895 * 298.63637 * 16 15 14 18 18 H 1.08998 * 109.49893 * 301.38116 * 17 16 15 19 19 C 1.50698 * 109.49747 * 181.31448 * 17 16 15 20 20 H 1.08001 * 120.00034 * 0.07046 * 19 17 16 21 21 C 1.37872 * 119.99955 * 179.78485 * 19 17 16 22 22 N 1.31520 * 120.00217 * 0.27919 * 21 19 17 23 23 Si 1.86799 * 120.00009 * 180.27479 * 21 19 17 24 24 H 1.48507 * 109.47175 * 60.00752 * 23 21 19 25 25 H 1.48508 * 109.47353 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47460 * 300.00352 * 23 21 19 27 27 C 1.46931 * 120.60028 * 173.10976 * 13 11 9 28 28 C 1.44681 * 120.54499 * 317.10426 * 8 7 6 29 29 H 1.09003 * 109.47273 * 178.12143 * 1 2 3 30 30 H 1.08997 * 109.47033 * 298.11822 * 1 2 3 31 31 H 1.08999 * 109.47379 * 58.12093 * 1 2 3 32 32 H 1.09003 * 108.84297 * 306.92580 * 4 2 1 33 33 H 1.08997 * 108.84832 * 65.39847 * 4 2 1 34 34 H 1.09001 * 109.14532 * 204.41558 * 6 5 4 35 35 H 1.08999 * 109.14983 * 323.56114 * 6 5 4 36 36 H 1.08990 * 108.58902 * 195.80181 * 7 6 5 37 37 H 1.09000 * 108.40171 * 78.51981 * 7 6 5 38 38 H 1.09001 * 109.59148 * 6.59991 * 14 13 11 39 39 H 1.09006 * 109.70249 * 246.24417 * 14 13 11 40 40 H 1.08998 * 109.50217 * 294.68422 * 15 14 13 41 41 H 1.08999 * 109.50232 * 174.58329 * 15 14 13 42 42 H 1.09004 * 109.45976 * 178.61451 * 16 15 14 43 43 H 1.08999 * 109.45842 * 58.65824 * 16 15 14 44 44 H 0.96997 * 119.99912 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.55901 * 113.81119 * 27 13 11 46 46 H 1.08992 * 109.61906 * 353.37671 * 27 13 11 47 47 H 1.09002 * 109.47427 * 218.74453 * 28 8 7 48 48 H 1.09000 * 109.47905 * 338.76130 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 1.9979 -0.6511 1.2180 5 16 3.8068 -0.5536 1.4153 6 6 4.4179 -1.7353 0.2037 7 6 4.5164 -1.1000 -1.1976 8 7 3.3768 -0.2604 -1.5712 9 6 3.5892 0.9177 -2.1904 10 8 4.7133 1.2371 -2.5176 11 6 2.4405 1.8306 -2.4741 12 8 1.3049 1.4630 -2.2552 13 7 2.6658 3.0623 -2.9729 14 6 4.0353 3.5784 -3.1026 15 6 4.2541 4.0383 -4.5474 16 6 3.1648 5.0433 -4.9291 17 6 1.7933 4.3704 -4.8389 18 1 1.7672 3.5071 -5.5037 19 6 0.7240 5.3513 -5.2460 20 1 0.9953 6.3542 -5.5409 21 6 -0.5999 4.9665 -5.2476 22 7 -0.9302 3.7451 -4.8885 23 14 -1.9246 6.1800 -5.7595 24 1 -1.6780 6.6222 -7.1556 25 1 -3.2550 5.5254 -5.6749 26 1 -1.8942 7.3570 -4.8547 27 6 1.5461 3.9136 -3.3977 28 6 2.0242 -0.6874 -1.2863 29 1 -0.3634 -1.0271 -0.0337 30 1 -0.3633 0.4843 0.9064 31 1 -0.3634 0.5427 -0.8726 32 1 1.5239 -0.1748 2.0762 33 1 1.7042 -1.7004 1.1914 34 1 5.4053 -2.0820 0.5089 35 1 3.7388 -2.5868 0.1605 36 1 4.6121 -1.8972 -1.9346 37 1 5.4196 -0.4910 -1.2367 38 1 4.7476 2.7903 -2.8582 39 1 4.1761 4.4210 -2.4256 40 1 4.2050 3.1778 -5.2146 41 1 5.2322 4.5114 -4.6344 42 1 3.3325 5.3908 -5.9486 43 1 3.1985 5.8922 -4.2462 44 1 -1.8617 3.4746 -4.8893 45 1 1.4812 4.7839 -2.7445 46 1 0.6164 3.3469 -3.3484 47 1 1.3741 -0.4139 -2.1174 48 1 2.0054 -1.7688 -1.1508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118456511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:34 Heat of formation + Delta-G solvation = -62.304907 kcal Electronic energy + Delta-G solvation = -29668.871867 eV Core-core repulsion = 25850.127641 eV Total energy + Delta-G solvation = -3818.744226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.23896 -40.00431 -38.98803 -38.00169 -35.81622 -35.13918 -33.45295 -32.26439 -31.56187 -28.30065 -27.81948 -27.51468 -26.78017 -25.19983 -23.52953 -22.86956 -21.92362 -20.86339 -20.12880 -18.67575 -18.29490 -18.01254 -17.54559 -17.28828 -16.79503 -16.50953 -16.44634 -15.86721 -15.54137 -15.41172 -15.16431 -14.93551 -14.64756 -14.48842 -14.42520 -14.22376 -13.77815 -13.72330 -13.56536 -13.44714 -13.00393 -12.93436 -12.84890 -12.72545 -12.45003 -12.33545 -12.28415 -12.13653 -12.01581 -11.74453 -11.67774 -11.36820 -11.05910 -10.95628 -10.71317 -10.53577 -9.99355 -9.79382 -9.46769 -8.72289 -8.11657 -6.27612 0.36883 0.72390 1.31225 1.42571 1.43803 1.51470 1.61967 2.16781 2.40586 2.47690 3.13498 3.19885 3.58002 3.67674 3.82861 4.00881 4.12717 4.18061 4.18915 4.31097 4.36572 4.44463 4.53945 4.58426 4.59169 4.66375 4.73634 4.74356 4.78512 4.81719 4.85602 4.95288 5.04824 5.13513 5.15083 5.23083 5.27330 5.31670 5.38918 5.50523 5.55967 5.63220 5.85340 5.89143 5.95531 6.29610 6.45042 6.71526 6.82921 7.05232 7.41793 8.92261 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.003655 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.827894 B = 7658.258285 C = 8882.186151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.043 0.957 4 C -0.060 4.060 5 S -0.301 6.301 6 C -0.085 4.085 7 C 0.102 3.898 8 N -0.564 5.564 9 C 0.517 3.483 10 O -0.523 6.523 11 C 0.485 3.515 12 O -0.529 6.529 13 N -0.578 5.578 14 C 0.050 3.950 15 C -0.119 4.119 16 C -0.107 4.107 17 C 0.040 3.960 18 H -0.011 1.011 19 C -0.539 4.539 20 H 0.060 0.940 21 C 0.016 3.984 22 N -0.912 5.912 23 Si 0.957 3.043 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.269 1.269 27 C 0.127 3.873 28 C 0.102 3.898 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.262 0.738 45 H 0.037 0.963 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 -13.674 11.804 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.062 0.938 4 C -0.207 4.207 5 S -0.072 6.072 6 C -0.234 4.234 7 C -0.021 4.021 8 N -0.295 5.295 9 C 0.301 3.699 10 O -0.402 6.402 11 C 0.268 3.732 12 O -0.408 6.408 13 N -0.310 5.310 14 C -0.071 4.071 15 C -0.157 4.157 16 C -0.144 4.144 17 C 0.021 3.979 18 H 0.008 0.992 19 C -0.577 4.577 20 H 0.078 0.922 21 C -0.184 4.184 22 N -0.550 5.550 23 Si 0.782 3.218 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.194 1.194 27 C 0.006 3.994 28 C -0.021 4.021 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.158 0.842 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.169 0.831 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.186 -13.225 12.517 20.865 hybrid contribution -1.832 0.305 -1.317 2.276 sum 8.355 -12.920 11.200 19.031 Atomic orbital electron populations 1.21745 0.93056 1.02633 1.01861 1.20368 0.97551 0.99477 0.93911 0.93808 1.22312 0.91834 1.05615 1.00987 1.86992 1.08587 1.60519 1.51105 1.23854 1.07504 0.98894 0.93149 1.21980 0.88487 0.95205 0.96450 1.47296 1.09010 1.18017 1.55141 1.20142 0.88374 0.82688 0.78712 1.90250 1.24909 1.72552 1.52504 1.20295 0.89514 0.83464 0.79950 1.90672 1.23928 1.74121 1.52038 1.48427 1.09856 1.14174 1.58494 1.23242 0.83345 1.02907 0.97565 1.21809 0.99483 0.98712 0.95714 1.21560 0.94687 0.97794 1.00394 1.18890 0.93133 0.94466 0.91412 0.99239 1.21443 0.91970 0.98696 1.45590 0.92177 1.25818 1.00949 0.96773 0.94893 1.70027 1.18229 1.18770 1.47983 0.85632 0.77989 0.79147 0.79027 1.19566 1.21108 1.19418 1.21885 0.89159 0.92161 0.96224 1.22077 0.81343 0.99931 0.98744 0.90584 0.92306 0.93699 0.87396 0.87454 0.84157 0.87140 0.88372 0.89637 0.83128 0.91661 0.93536 0.88640 0.92893 0.92668 0.92901 0.94420 0.89275 0.89008 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.83 71.98 0.64 -2.50 16 2 C -0.09 -2.17 1.52 -12.66 -0.02 -2.19 16 3 H 0.04 1.39 6.79 -2.39 -0.02 1.37 16 4 C -0.06 -1.07 5.00 69.78 0.35 -0.73 16 5 S -0.30 -6.04 21.63 -56.49 -1.22 -7.26 16 6 C -0.09 -1.10 5.90 72.38 0.43 -0.68 16 7 C 0.10 1.82 6.00 86.80 0.52 2.35 16 8 N -0.56 -14.33 2.40 -823.92 -1.98 -16.30 16 9 C 0.52 17.25 7.38 87.27 0.64 17.89 16 10 O -0.52 -17.92 12.47 -3.26 -0.04 -17.96 16 11 C 0.49 19.65 7.12 87.27 0.62 20.27 16 12 O -0.53 -22.85 10.01 -3.24 -0.03 -22.89 16 13 N -0.58 -24.64 2.97 -820.48 -2.44 -27.08 16 14 C 0.05 1.80 6.27 86.36 0.54 2.34 16 15 C -0.12 -4.20 6.08 30.67 0.19 -4.01 16 16 C -0.11 -4.43 5.11 30.62 0.16 -4.27 16 17 C 0.04 2.07 2.25 -11.46 -0.03 2.04 16 18 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 19 C -0.54 -29.75 8.56 25.60 0.22 -29.54 16 20 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 21 C 0.02 0.86 5.31 84.65 0.45 1.31 16 22 N -0.91 -53.55 11.40 21.45 0.24 -53.31 16 23 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 C 0.13 6.37 5.39 86.36 0.47 6.84 16 28 C 0.10 2.40 4.30 87.05 0.37 2.77 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 31 H 0.04 1.41 6.80 -2.39 -0.02 1.40 16 32 H 0.11 1.88 7.99 -2.39 -0.02 1.86 16 33 H 0.11 1.35 8.11 -2.39 -0.02 1.33 16 34 H 0.14 1.25 8.14 -2.47 -0.02 1.23 16 35 H 0.11 0.95 7.91 -2.47 -0.02 0.94 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.77 7.01 -2.39 -0.02 1.76 16 38 H 0.15 5.26 3.78 -79.10 -0.30 4.96 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.09 5.11 5.18 -2.39 -0.01 5.10 16 47 H 0.09 2.80 5.54 -2.39 -0.01 2.78 16 48 H 0.11 1.69 7.52 -2.39 -0.02 1.67 16 Total: -1.00 -66.99 368.90 2.77 -64.22 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.66 Total: 22.98 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.55 Total: 11.90 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -4.17 Total: -96.69 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.07 Total: -40.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -1.22 Total: -7.26 kcal Total: -66.99 2.77 -64.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118456511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.912 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds