Wall clock time and date at job start Sat Apr 11 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 108.68141 * 2 1 4 4 C 1.45820 * 108.62138 * 118.12571 * 2 1 3 5 5 S 1.82219 * 112.64684 * 186.04357 * 4 2 1 6 6 C 1.79954 * 103.24443 * 286.05035 * 5 4 2 7 7 C 1.53831 * 111.14032 * 84.00120 * 6 5 4 8 8 N 1.46389 * 114.94519 * 316.94985 * 7 6 5 9 9 C 1.34782 * 119.72750 * 137.50989 * 8 7 6 10 10 O 1.21344 * 119.99713 * 355.79532 * 9 8 7 11 11 C 1.49452 * 120.00083 * 175.79491 * 9 8 7 12 12 O 1.21343 * 120.00043 * 6.85936 * 11 9 8 13 13 N 1.34777 * 119.99818 * 186.85376 * 11 9 8 14 14 C 1.46920 * 120.63187 * 6.96386 * 13 11 9 15 15 C 1.53188 * 108.77960 * 233.58514 * 14 13 11 16 16 C 1.53040 * 109.31209 * 305.36609 * 15 14 13 17 17 C 1.53039 * 109.53683 * 61.36281 * 16 15 14 18 18 H 1.08997 * 109.49884 * 58.62111 * 17 16 15 19 19 C 1.50703 * 109.49520 * 178.68674 * 17 16 15 20 20 H 1.07995 * 120.00683 * 359.97438 * 19 17 16 21 21 C 1.37885 * 119.99920 * 180.02562 * 19 17 16 22 22 N 1.31520 * 119.99677 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00092 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47077 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47034 * 119.99765 * 23 21 19 26 26 H 1.48502 * 109.47065 * 239.99844 * 23 21 19 27 27 C 1.46923 * 120.62889 * 186.68549 * 13 11 9 28 28 C 1.44678 * 120.54867 * 317.48499 * 8 7 6 29 29 H 1.08995 * 109.46857 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47196 * 300.00161 * 1 2 3 31 31 H 1.09006 * 109.46907 * 60.00509 * 1 2 3 32 32 H 1.09004 * 108.84861 * 306.85742 * 4 2 1 33 33 H 1.09001 * 108.84475 * 65.22537 * 4 2 1 34 34 H 1.08997 * 109.14456 * 323.57058 * 6 5 4 35 35 H 1.09005 * 109.09574 * 204.39459 * 6 5 4 36 36 H 1.08998 * 108.38369 * 195.53873 * 7 6 5 37 37 H 1.08997 * 108.38972 * 78.37232 * 7 6 5 38 38 H 1.09000 * 109.58672 * 353.37187 * 14 13 11 39 39 H 1.08995 * 109.58659 * 113.79505 * 14 13 11 40 40 H 1.09004 * 109.49737 * 65.31742 * 15 14 13 41 41 H 1.09000 * 109.50184 * 185.37911 * 15 14 13 42 42 H 1.08995 * 109.46110 * 181.38262 * 16 15 14 43 43 H 1.09002 * 109.45805 * 301.34368 * 16 15 14 44 44 H 0.96998 * 119.99469 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58295 * 246.20232 * 27 13 11 46 46 H 1.09004 * 109.58634 * 6.62368 * 27 13 11 47 47 H 1.09002 * 109.47799 * 338.51628 * 28 8 7 48 48 H 1.08997 * 109.48312 * 218.49161 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8792 1.0327 0.0000 4 6 1.9956 -0.6514 1.2187 5 16 3.8045 -0.5570 1.4176 6 6 4.4147 -1.7404 0.2070 7 6 4.5160 -1.1032 -1.1895 8 7 3.3781 -0.2643 -1.5694 9 6 3.5932 0.9131 -2.1891 10 8 4.7270 1.3096 -2.3617 11 6 2.4354 1.7302 -2.6637 12 8 1.3026 1.3979 -2.3831 13 7 2.6495 2.8363 -3.4035 14 6 3.9990 3.1688 -3.8796 15 6 4.3350 4.6002 -3.4496 16 6 3.2415 5.5481 -3.9475 17 6 1.9011 5.1574 -3.3208 18 1 1.9806 5.2021 -2.2346 19 6 0.8312 6.1110 -3.7865 20 1 1.0816 6.9158 -4.4617 21 6 -0.4675 5.9567 -3.3497 22 7 -0.7725 4.9769 -2.5270 23 14 -1.7937 7.1392 -3.9263 24 1 -1.1961 8.1455 -4.8403 25 1 -2.8519 6.3842 -4.6443 26 1 -2.3871 7.8281 -2.7522 27 6 1.5367 3.7293 -3.7541 28 6 2.0244 -0.6888 -1.2856 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.5217 -0.1739 2.0764 33 1 1.6984 -1.6998 1.1931 34 1 3.7340 -2.5905 0.1636 35 1 5.4013 -2.0878 0.5139 36 1 4.6155 -1.9014 -1.9251 37 1 5.4193 -0.4942 -1.2249 38 1 4.7207 2.4776 -3.4443 39 1 4.0310 3.0969 -4.9667 40 1 4.3918 4.6495 -2.3622 41 1 5.2937 4.8932 -3.8776 42 1 3.4906 6.5706 -3.6641 43 1 3.1685 5.4799 -5.0330 44 1 -1.6862 4.8682 -2.2200 45 1 1.3719 3.7021 -4.8312 46 1 0.6331 3.4080 -3.2359 47 1 2.0036 -1.7701 -1.1494 48 1 1.3755 -0.4145 -2.1173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118456512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:37 Heat of formation + Delta-G solvation = -61.959839 kcal Electronic energy + Delta-G solvation = -29721.449188 eV Core-core repulsion = 25902.719926 eV Total energy + Delta-G solvation = -3818.729262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23126 -40.00827 -38.96829 -38.01894 -35.82714 -35.13739 -33.46007 -32.28780 -31.54769 -28.30278 -27.82586 -27.50998 -26.77892 -25.18816 -23.53704 -22.85926 -21.92359 -20.92982 -20.04836 -18.70377 -18.30605 -18.02126 -17.59243 -17.25938 -16.82006 -16.49546 -16.44384 -15.82406 -15.52375 -15.45695 -15.15903 -14.96381 -14.64986 -14.46114 -14.38212 -14.25132 -13.83472 -13.74525 -13.54930 -13.45129 -13.10709 -12.91050 -12.79993 -12.72509 -12.37969 -12.32823 -12.29810 -12.12905 -12.03574 -11.76625 -11.68409 -11.37304 -11.08708 -10.95727 -10.69081 -10.55103 -9.89052 -9.87102 -9.45312 -8.73121 -8.11866 -6.27681 0.37782 0.71794 1.29823 1.40862 1.42436 1.53934 1.62369 2.16756 2.40448 2.48263 3.13567 3.20068 3.58882 3.68307 3.83312 4.02110 4.12779 4.17482 4.18857 4.30826 4.36431 4.42947 4.54627 4.58392 4.58754 4.65860 4.72717 4.74120 4.77105 4.81735 4.86373 4.95108 5.04505 5.13970 5.15112 5.22754 5.26983 5.31405 5.39143 5.49896 5.56195 5.63371 5.85013 5.89709 5.95315 6.29338 6.44840 6.72476 6.83251 7.04704 7.41720 8.92385 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003840 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.934456 B = 7290.011224 C = 8517.591620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 H 0.035 0.965 4 C -0.059 4.059 5 S -0.310 6.310 6 C -0.084 4.084 7 C 0.101 3.899 8 N -0.563 5.563 9 C 0.517 3.483 10 O -0.523 6.523 11 C 0.485 3.515 12 O -0.530 6.530 13 N -0.577 5.577 14 C 0.050 3.950 15 C -0.120 4.120 16 C -0.106 4.106 17 C 0.040 3.960 18 H -0.014 1.014 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.957 3.043 24 H -0.264 1.264 25 H -0.280 1.280 26 H -0.283 1.283 27 C 0.127 3.873 28 C 0.100 3.900 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.153 0.847 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.261 0.739 45 H 0.042 0.958 46 H 0.088 0.912 47 H 0.108 0.892 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.214 -18.002 3.590 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.053 0.947 4 C -0.206 4.206 5 S -0.081 6.081 6 C -0.233 4.233 7 C -0.023 4.023 8 N -0.293 5.293 9 C 0.301 3.699 10 O -0.403 6.403 11 C 0.267 3.733 12 O -0.409 6.409 13 N -0.309 5.309 14 C -0.070 4.070 15 C -0.158 4.158 16 C -0.144 4.144 17 C 0.020 3.980 18 H 0.004 0.996 19 C -0.574 4.574 20 H 0.078 0.922 21 C -0.185 4.185 22 N -0.550 5.550 23 Si 0.783 3.217 24 H -0.188 1.188 25 H -0.205 1.205 26 H -0.209 1.209 27 C 0.005 3.995 28 C -0.023 4.023 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.158 0.842 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.127 0.873 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.699 -17.455 4.472 20.463 hybrid contribution -1.822 0.558 -0.848 2.086 sum 7.877 -16.897 3.623 18.991 Atomic orbital electron populations 1.21732 0.93023 1.02676 1.01763 1.20375 0.97582 0.99114 0.94366 0.94684 1.22296 0.91739 1.05679 1.00898 1.87094 1.08777 1.60648 1.51546 1.23811 1.07464 0.98764 0.93233 1.21931 0.88677 0.95164 0.96525 1.47315 1.09025 1.18066 1.54936 1.20128 0.88584 0.82027 0.79200 1.90251 1.24361 1.68849 1.56798 1.20310 0.89479 0.82881 0.80585 1.90649 1.24328 1.68655 1.57241 1.48437 1.11335 1.22170 1.48981 1.23249 0.83919 0.99701 1.00138 1.21810 0.99257 0.94580 1.00169 1.21555 0.94762 0.98297 0.99775 1.18972 0.93239 0.91767 0.93981 0.99566 1.21494 0.93707 1.13386 1.28842 0.92157 1.25832 1.00939 0.96960 0.94790 1.70055 1.19644 1.31875 1.33412 0.85517 0.78992 0.79098 0.78131 1.18807 1.20536 1.20882 1.21975 0.89270 0.90306 0.97952 1.22151 0.81465 1.00004 0.98686 0.90051 0.92981 0.93625 0.87882 0.87065 0.86892 0.84203 0.87719 0.89723 0.83128 0.91189 0.93969 0.88584 0.93056 0.92399 0.92961 0.93963 0.89383 0.87349 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.85 71.98 0.64 -2.72 16 2 C -0.09 -2.39 1.57 -12.66 -0.02 -2.41 16 3 H 0.03 1.25 7.21 -2.38 -0.02 1.23 16 4 C -0.06 -1.17 4.99 69.78 0.35 -0.82 16 5 S -0.31 -6.88 21.62 -56.49 -1.22 -8.10 16 6 C -0.08 -1.13 5.90 72.26 0.43 -0.71 16 7 C 0.10 1.77 6.02 86.68 0.52 2.29 16 8 N -0.56 -14.21 2.40 -824.59 -1.98 -16.19 16 9 C 0.52 17.20 7.30 87.27 0.64 17.84 16 10 O -0.52 -17.98 12.43 -3.23 -0.04 -18.02 16 11 C 0.48 19.58 7.40 87.27 0.65 20.22 16 12 O -0.53 -22.90 10.31 -3.22 -0.03 -22.94 16 13 N -0.58 -24.48 2.97 -819.68 -2.43 -26.91 16 14 C 0.05 1.79 6.26 86.36 0.54 2.33 16 15 C -0.12 -4.27 6.08 30.67 0.19 -4.09 16 16 C -0.11 -4.43 5.10 30.62 0.16 -4.27 16 17 C 0.04 2.05 2.26 -11.32 -0.03 2.02 16 18 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 19 C -0.54 -29.68 8.56 25.60 0.22 -29.46 16 20 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 21 C 0.01 0.81 5.31 84.66 0.45 1.26 16 22 N -0.91 -53.76 11.41 21.45 0.24 -53.52 16 23 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C 0.13 6.31 5.41 86.51 0.47 6.78 16 28 C 0.10 2.32 4.30 87.06 0.37 2.70 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.31 8.07 -2.39 -0.02 1.29 16 31 H 0.04 1.50 6.89 -2.38 -0.02 1.49 16 32 H 0.10 2.10 8.01 -2.39 -0.02 2.08 16 33 H 0.11 1.52 8.11 -2.39 -0.02 1.51 16 34 H 0.11 0.98 7.91 -2.47 -0.02 0.96 16 35 H 0.14 1.33 8.14 -2.47 -0.02 1.31 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.78 6.92 -2.39 -0.02 1.77 16 38 H 0.15 5.18 3.79 -78.37 -0.30 4.89 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.09 5.04 5.20 -2.39 -0.01 5.03 16 47 H 0.11 1.64 7.52 -2.39 -0.02 1.63 16 48 H 0.10 2.91 5.24 -2.39 -0.01 2.90 16 Total: -1.00 -68.41 369.66 2.79 -65.62 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.67 Total: 23.25 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.57 Total: 10.95 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -4.17 Total: -96.62 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.07 Total: -40.95 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.22 Total: -8.10 kcal Total: -68.41 2.79 -65.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118456512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.659 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds