Wall clock time and date at job start Sat Apr 11 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 108.68339 * 2 1 4 4 C 1.45825 * 108.72229 * 241.81587 * 2 1 3 5 5 S 1.82215 * 112.65671 * 173.89281 * 4 2 1 6 6 C 1.79945 * 103.24155 * 73.95563 * 5 4 2 7 7 C 1.53829 * 111.13613 * 276.00379 * 6 5 4 8 8 N 1.46396 * 114.95155 * 43.04806 * 7 6 5 9 9 C 1.34780 * 119.72370 * 222.54391 * 8 7 6 10 10 O 1.21349 * 119.99819 * 174.94366 * 9 8 7 11 11 C 1.49449 * 119.99784 * 354.94646 * 9 8 7 12 12 O 1.21348 * 120.00521 * 85.48763 * 11 9 8 13 13 N 1.34785 * 119.99746 * 265.47901 * 11 9 8 14 14 C 1.46924 * 120.62828 * 4.78691 * 13 11 9 15 15 C 1.53623 * 108.54089 * 126.36803 * 14 13 11 16 16 C 1.53040 * 109.24414 * 54.85666 * 15 14 13 17 17 C 1.53044 * 109.53438 * 298.50874 * 16 15 14 18 18 H 1.08999 * 109.50272 * 301.41390 * 17 16 15 19 19 C 1.50706 * 109.52473 * 181.32996 * 17 16 15 20 20 H 1.08004 * 119.99590 * 0.14673 * 19 17 16 21 21 C 1.37872 * 119.99930 * 180.14780 * 19 17 16 22 22 N 1.31509 * 120.00500 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99671 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47211 * 59.99971 * 23 21 19 25 25 H 1.48505 * 109.46833 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46845 * 299.99824 * 23 21 19 27 27 C 1.46924 * 120.62844 * 185.06387 * 13 11 9 28 28 C 1.44679 * 120.54872 * 42.52100 * 8 7 6 29 29 H 1.09000 * 109.47159 * 178.18300 * 1 2 3 30 30 H 1.09003 * 109.47243 * 298.18353 * 1 2 3 31 31 H 1.08998 * 109.47240 * 58.18670 * 1 2 3 32 32 H 1.09003 * 108.84310 * 294.71503 * 4 2 1 33 33 H 1.09004 * 108.84323 * 53.17432 * 4 2 1 34 34 H 1.09005 * 109.14989 * 36.42770 * 6 5 4 35 35 H 1.08994 * 109.14750 * 155.57755 * 6 5 4 36 36 H 1.09002 * 108.38353 * 164.46519 * 7 6 5 37 37 H 1.08999 * 108.38335 * 281.63031 * 7 6 5 38 38 H 1.09001 * 109.58583 * 246.19673 * 14 13 11 39 39 H 1.08998 * 109.58654 * 6.63072 * 14 13 11 40 40 H 1.09006 * 109.63549 * 294.86437 * 15 14 13 41 41 H 1.09001 * 109.45814 * 174.73886 * 15 14 13 42 42 H 1.08994 * 109.46202 * 178.49474 * 16 15 14 43 43 H 1.09000 * 109.44763 * 58.52177 * 16 15 14 44 44 H 0.97004 * 120.00393 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.58834 * 353.38200 * 27 13 11 46 46 H 1.09008 * 109.58018 * 113.65805 * 27 13 11 47 47 H 1.09001 * 109.47123 * 141.51429 * 28 8 7 48 48 H 1.08992 * 109.47492 * 21.49500 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8791 1.0326 0.0000 4 6 1.9980 -0.6523 -1.2173 5 16 3.8068 -0.5551 -1.4147 6 6 4.4178 -1.7359 -0.2021 7 6 4.5166 -1.0967 1.1936 8 7 3.3769 -0.2591 1.5714 9 6 3.5897 0.9199 2.1888 10 8 2.6566 1.6598 2.4217 11 6 4.9748 1.3158 2.5865 12 8 5.7012 1.8685 1.7868 13 7 5.4172 1.0591 3.8335 14 6 4.5894 0.2989 4.7798 15 6 5.4171 -0.8790 5.3159 16 6 6.7237 -0.3483 5.9102 17 6 7.5352 0.3524 4.8180 18 1 7.7393 -0.3495 4.0095 19 6 8.8364 0.8464 5.3959 20 1 9.0639 0.6756 6.4378 21 6 9.7364 1.5163 4.5945 22 7 9.4592 1.7247 3.3260 23 14 11.3496 2.1279 5.3108 24 1 12.1257 0.9765 5.8371 25 1 12.1341 2.8114 4.2511 26 1 11.0711 3.0828 6.4136 27 6 6.7339 1.5395 4.2744 28 6 2.0242 -0.6862 1.2870 29 1 -0.3633 -1.0271 -0.0326 30 1 -0.3634 0.4854 0.9058 31 1 -0.3633 0.5417 -0.8733 32 1 1.7025 -1.7012 -1.1907 33 1 1.5254 -0.1757 -2.0762 34 1 3.7384 -2.5872 -0.1581 35 1 5.4050 -2.0830 -0.5070 36 1 4.6168 -1.8938 1.9304 37 1 5.4188 -0.4861 1.2290 38 1 4.2911 0.9451 5.6053 39 1 3.7032 -0.0779 4.2691 40 1 5.6412 -1.5694 4.5027 41 1 4.8507 -1.3988 6.0887 42 1 7.3019 -1.1785 6.3158 43 1 6.4985 0.3609 6.7067 44 1 10.0922 2.1963 2.7623 45 1 7.2629 1.9817 3.4302 46 1 6.6066 2.2868 5.0578 47 1 1.3743 -0.4117 2.1178 48 1 2.0053 -1.7677 1.1525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118456513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:41 Heat of formation + Delta-G solvation = -70.610052 kcal Electronic energy + Delta-G solvation = -29480.776048 eV Core-core repulsion = 25661.671684 eV Total energy + Delta-G solvation = -3819.104364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78999 -38.84052 -37.16336 -36.68905 -35.17527 -33.43457 -31.87997 -31.08747 -29.91906 -27.76608 -27.56757 -25.39838 -25.04825 -23.68812 -22.24347 -21.91977 -20.83383 -19.40781 -18.50541 -17.53961 -16.97704 -16.53271 -16.38517 -16.09012 -15.73617 -15.01215 -14.72118 -14.56910 -14.33950 -14.05637 -13.82089 -13.78718 -13.53413 -13.31590 -13.06024 -12.86704 -12.78983 -12.69533 -12.28235 -12.09324 -12.00124 -11.95180 -11.47205 -11.38448 -11.08549 -11.07170 -10.97047 -10.90537 -10.57986 -10.47099 -10.30617 -9.98353 -9.89278 -9.27402 -9.19859 -8.90977 -8.85875 -8.49298 -7.93186 -7.78674 -6.04596 -4.13730 1.52401 2.32723 2.37822 2.52740 3.03424 3.29878 3.36561 3.37301 3.67446 4.28288 4.36483 4.40201 4.51149 4.59205 4.74444 4.87171 5.06324 5.10127 5.17892 5.25627 5.25833 5.31116 5.35336 5.37474 5.38639 5.52704 5.56854 5.60360 5.74455 5.88605 5.90374 6.00999 6.06122 6.21469 6.39191 6.49177 6.55655 6.74799 6.87840 6.98142 7.06346 7.10825 7.52730 7.76796 7.87509 7.92249 8.04245 8.29697 8.50928 8.89784 9.52486 11.00657 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.003420 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.703281 B = 8184.177728 C = 8813.640946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.074 4.074 5 S -0.237 6.237 6 C -0.101 4.101 7 C 0.101 3.899 8 N -0.590 5.590 9 C 0.525 3.475 10 O -0.515 6.515 11 C 0.504 3.496 12 O -0.504 6.504 13 N -0.587 5.587 14 C 0.108 3.892 15 C -0.130 4.130 16 C -0.112 4.112 17 C 0.043 3.957 18 H 0.030 0.970 19 C -0.523 4.523 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.880 5.880 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.110 3.890 28 C 0.118 3.882 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.265 0.735 45 H 0.125 0.875 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 -10.235 -5.083 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 H 0.107 0.893 4 C -0.222 4.222 5 S -0.008 6.008 6 C -0.250 4.250 7 C -0.025 4.025 8 N -0.324 5.324 9 C 0.308 3.692 10 O -0.389 6.389 11 C 0.285 3.715 12 O -0.379 6.379 13 N -0.321 5.321 14 C -0.015 4.015 15 C -0.168 4.168 16 C -0.149 4.149 17 C 0.024 3.976 18 H 0.048 0.952 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.517 5.517 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.010 4.010 28 C -0.006 4.006 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.143 0.857 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.133 -8.819 -6.283 19.430 hybrid contribution 0.174 -0.464 1.129 1.233 sum -15.959 -9.283 -5.154 19.168 Atomic orbital electron populations 1.21845 0.93692 1.01810 1.02662 1.20656 0.96754 1.02419 0.93944 0.89283 1.22284 0.94242 1.03983 1.01645 1.87028 1.05499 1.58849 1.49420 1.23732 1.06184 0.99397 0.95673 1.21827 0.89667 0.95909 0.95079 1.47432 1.06846 1.19718 1.58443 1.20747 0.90302 0.80675 0.77431 1.90744 1.43132 1.49832 1.55210 1.19975 0.86317 0.81512 0.83713 1.90857 1.54425 1.42248 1.50331 1.48594 1.20066 1.52531 1.10911 1.21775 0.92846 0.93822 0.93077 1.22009 0.97982 0.96638 1.00213 1.21646 0.94168 0.99687 0.99440 1.18952 0.92579 0.92762 0.93306 0.95171 1.21019 1.01261 1.37490 0.96393 0.92311 1.25044 0.98314 0.95743 0.94815 1.69850 1.36146 1.40727 1.04967 0.86644 0.83543 0.79015 0.78734 1.20276 1.21218 1.20223 1.22488 0.78101 0.98499 1.01881 1.21474 0.82996 0.98643 0.97453 0.92596 0.91768 0.92280 0.90233 0.87712 0.89526 0.86024 0.90505 0.88428 0.91315 0.91778 0.92104 0.91967 0.92754 0.92989 0.92465 0.85687 0.93373 0.89379 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.94 37.16 0.33 -0.74 16 2 C -0.12 -1.18 2.30 -93.50 -0.22 -1.39 16 3 H 0.09 1.23 7.51 -51.93 -0.39 0.84 16 4 C -0.07 -0.67 5.00 33.76 0.17 -0.51 16 5 S -0.24 -2.94 21.62 -107.50 -2.32 -5.26 16 6 C -0.10 -1.02 5.90 37.59 0.22 -0.80 16 7 C 0.10 1.25 5.85 -3.67 -0.02 1.23 16 8 N -0.59 -7.91 2.40 -174.57 -0.42 -8.33 16 9 C 0.52 9.20 5.15 -11.58 -0.06 9.14 16 10 O -0.52 -9.91 16.45 5.50 0.09 -9.82 16 11 C 0.50 10.45 5.64 -11.58 -0.07 10.39 16 12 O -0.50 -12.46 16.13 5.50 0.09 -12.37 16 13 N -0.59 -11.69 2.97 -173.01 -0.51 -12.20 16 14 C 0.11 1.71 6.35 -3.49 -0.02 1.69 16 15 C -0.13 -1.95 6.10 -26.39 -0.16 -2.11 16 16 C -0.11 -2.08 5.11 -26.69 -0.14 -2.22 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 18 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 19 C -0.52 -13.64 8.57 -34.44 -0.29 -13.93 16 20 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.88 -24.87 11.39 55.43 0.63 -24.24 16 23 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.11 2.58 5.41 -3.71 -0.02 2.56 16 28 C 0.12 1.21 4.59 -4.50 -0.02 1.19 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 31 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.08 0.57 8.11 -51.92 -0.42 0.15 16 33 H 0.10 0.88 8.04 -51.92 -0.42 0.46 16 34 H 0.09 0.66 7.91 -51.80 -0.41 0.25 16 35 H 0.12 1.16 8.14 -51.80 -0.42 0.74 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.58 6.11 -51.93 -0.32 1.26 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.13 3.44 5.11 -51.93 -0.27 3.17 16 46 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 47 H 0.09 0.93 7.44 -51.93 -0.39 0.54 16 48 H 0.08 0.61 7.52 -51.93 -0.39 0.22 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -31.53 382.02 -10.24 -41.77 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.93 Total: 2.00 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -0.59 Total: 6.92 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.30 Total: -44.77 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.18 Total: -22.19 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.32 Total: -5.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.53 -10.24 -41.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118456513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.840 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds